Wall clock time and date at job start Sun Mar 29 2020 22:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48495 * 109.46875 * 239.99990 * 3 2 1 5 5 H 1.48504 * 109.46800 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47333 * 119.99817 * 3 2 1 7 7 C 1.37876 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99656 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46959 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99876 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00144 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72218 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 H 1.09000 * 110.30820 * 57.81382 * 15 14 13 17 17 C 1.54173 * 110.34507 * 179.97438 * 15 14 13 18 18 O 1.44304 * 104.93622 * 118.86918 * 17 15 14 19 19 C 1.44395 * 104.60813 * 23.63676 * 18 17 15 20 20 O 1.44290 * 110.34495 * 295.51661 * 15 14 13 21 21 H 0.96999 * 120.00495 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46948 * 60.00523 * 9 7 2 23 23 H 1.08994 * 109.47551 * 299.99811 * 9 7 2 24 24 H 0.97000 * 119.99601 * 359.97438 * 10 9 7 25 25 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 26 26 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 27 27 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 28 28 H 1.08998 * 110.34896 * 237.72742 * 17 15 14 29 29 H 1.08994 * 110.35046 * 0.02562 * 17 15 14 30 30 H 1.09002 * 110.40190 * 79.46134 * 19 18 17 31 31 H 1.09005 * 110.40177 * 201.75777 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0015 12 8 0.5587 -5.1055 0.0006 13 7 2.6299 -5.9076 0.0021 14 6 2.1417 -7.2889 0.0079 15 6 3.3317 -8.2505 0.0144 16 1 3.9668 -8.0606 0.8797 17 6 2.8401 -9.7117 0.0212 18 8 3.3611 -10.2852 -1.1962 19 6 4.5030 -9.4650 -1.5254 20 8 4.0901 -8.1183 -1.2060 21 1 -0.4851 0.8400 -0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8902 24 1 3.1569 -3.4353 0.0021 25 1 3.5836 -5.7304 0.0031 26 1 1.5347 -7.4560 0.8978 27 1 1.5375 -7.4645 -0.8822 28 1 3.2352 -10.2405 0.8886 29 1 1.7506 -9.7451 0.0195 30 1 5.3637 -9.7518 -0.9213 31 1 4.7389 -9.5504 -2.5862 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922229885.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:59 Heat of formation + Delta-G solvation = -153.130107 kcal Electronic energy + Delta-G solvation = -15737.543307 eV Core-core repulsion = 12824.930302 eV Total energy + Delta-G solvation = -2912.613005 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.46032 -40.67736 -36.63543 -36.06805 -35.44528 -34.33537 -31.96631 -29.25419 -26.83627 -25.84030 -24.47016 -22.82839 -21.86061 -19.82179 -18.32668 -18.10734 -17.67292 -17.16370 -17.06041 -16.44288 -16.35634 -16.05903 -15.18425 -14.94201 -14.42441 -14.38576 -14.00999 -13.70707 -13.33474 -13.23564 -12.92035 -12.66515 -12.61774 -12.22108 -11.49120 -11.33698 -11.21860 -10.78506 -10.78419 -10.30683 -9.59648 -8.27023 -6.43760 1.44443 1.49206 1.57119 1.83628 2.22958 2.40536 2.57376 3.07655 3.08063 3.39868 3.56865 3.72180 3.94873 4.09818 4.41773 4.51748 4.57263 4.63982 4.81878 4.98451 5.09469 5.27873 5.46985 5.50220 5.67585 5.85622 5.86123 6.24642 6.67639 7.25071 7.30226 7.70823 8.85231 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.065724 B = 0.004271 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.921404 B = 6553.707750 C = 6848.879880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.691 3.309 12 O -0.650 6.650 13 N -0.730 5.730 14 C 0.140 3.860 15 C 0.044 3.956 16 H 0.120 0.880 17 C 0.025 3.975 18 O -0.404 6.404 19 C 0.194 3.806 20 O -0.397 6.397 21 H 0.269 0.731 22 H -0.016 1.016 23 H -0.012 1.012 24 H 0.405 0.595 25 H 0.411 0.589 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.965 -17.841 1.202 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.376 5.376 11 C 0.390 3.610 12 O -0.533 6.533 13 N -0.387 5.387 14 C 0.015 3.985 15 C -0.014 4.014 16 H 0.138 0.862 17 C -0.052 4.052 18 O -0.325 6.325 19 C 0.081 3.919 20 O -0.318 6.318 21 H 0.078 0.922 22 H 0.002 0.998 23 H 0.005 0.995 24 H 0.240 0.760 25 H 0.247 0.753 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.691 -17.919 0.958 21.417 hybrid contribution 0.611 1.008 0.016 1.179 sum 12.302 -16.911 0.974 20.935 Atomic orbital electron populations 1.70138 1.08295 1.28660 1.49884 1.26073 0.95782 1.03882 0.93811 0.85175 0.77869 0.76481 0.79474 1.18763 1.21049 1.18565 1.21576 0.94321 0.90478 1.53067 0.89827 1.18424 0.88122 0.83342 0.93989 1.45298 1.10926 1.03809 1.77607 1.16307 0.85070 0.81652 0.77947 1.90835 1.16694 1.84986 1.60763 1.44783 1.09132 1.04434 1.80351 1.21434 0.95565 0.78958 1.02522 1.23937 0.92841 0.95342 0.89274 0.86207 1.24164 1.02082 0.90388 0.88558 1.89239 1.46445 1.53904 1.42925 1.25305 0.89017 0.74423 1.03201 1.89315 1.71254 1.29060 1.42184 0.92211 0.99791 0.99451 0.76000 0.75268 0.89537 0.93060 0.87064 0.87811 0.89086 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.99 42.61 29.54 68.60 2.03 44.63 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.56 -30.81 9.28 25.60 0.24 -30.58 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.28 16.14 5.43 85.63 0.46 16.60 16 10 N -0.72 -32.16 5.55 -482.30 -2.68 -34.84 16 11 C 0.69 29.80 8.57 179.05 1.53 31.34 16 12 O -0.65 -34.47 16.34 -3.98 -0.06 -34.53 16 13 N -0.73 -22.00 5.52 -478.53 -2.64 -24.64 16 14 C 0.14 3.50 5.19 86.38 0.45 3.95 16 15 C 0.04 0.74 3.61 30.99 0.11 0.85 16 16 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 17 C 0.02 0.35 7.56 72.38 0.55 0.89 16 18 O -0.40 -7.54 11.78 -125.85 -1.48 -9.02 16 19 C 0.19 2.88 8.52 113.37 0.97 3.85 16 20 O -0.40 -8.13 11.43 -125.85 -1.44 -9.57 16 21 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 22 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 23 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 24 H 0.40 14.87 8.34 -92.71 -0.77 14.09 16 25 H 0.41 9.84 8.49 -92.71 -0.79 9.05 16 26 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 1.43 7.71 -2.39 -0.02 1.41 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -77.20 273.96 -1.63 -78.83 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -0.41 Total: 18.12 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: 4.77 Total: 27.59 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -5.04 Total: -116.05 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -2.99 Total: -53.12 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -77.20 -1.63 -78.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922229885.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.298 kcal (2) G-P(sol) polarization free energy of solvation -77.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds