Wall clock time and date at job start Sun Mar 29 2020 21:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00243 * 2 1 4 4 O 1.42902 * 112.90523 * 293.88720 * 3 2 1 5 5 C 1.42904 * 113.99960 * 310.98895 * 4 3 2 6 6 C 1.53777 * 113.61477 * 162.63637 * 3 2 1 7 7 C 1.53782 * 87.07939 * 220.01484 * 6 3 2 8 8 C 1.53781 * 113.61490 * 65.13427 * 3 2 1 9 9 H 1.08995 * 113.61653 * 25.35759 * 8 3 2 10 10 N 1.46903 * 113.61700 * 254.53297 * 8 3 2 11 11 C 1.46894 * 110.99990 * 155.00447 * 10 8 3 12 12 C 1.52995 * 109.46995 * 180.02562 * 11 10 8 13 13 C 1.50706 * 109.47076 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99828 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99585 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00392 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99447 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47111 * 89.99894 * 17 15 13 19 19 H 1.48498 * 109.47126 * 209.99854 * 17 15 13 20 20 H 1.48498 * 109.47165 * 330.00155 * 17 15 13 21 21 H 1.09008 * 109.46931 * 63.77203 * 1 2 3 22 22 H 1.08995 * 109.47359 * 183.77252 * 1 2 3 23 23 H 1.08998 * 109.47709 * 303.77583 * 1 2 3 24 24 H 1.09007 * 109.46987 * 55.99971 * 5 4 3 25 25 H 1.09000 * 109.47234 * 175.99658 * 5 4 3 26 26 H 1.08995 * 109.46989 * 296.00176 * 5 4 3 27 27 H 1.08993 * 113.61512 * 334.56189 * 6 3 2 28 28 H 1.09005 * 113.61362 * 105.47399 * 6 3 2 29 29 H 1.08998 * 113.61543 * 270.88491 * 7 6 3 30 30 H 1.09002 * 113.61217 * 139.98265 * 7 6 3 31 31 H 1.00897 * 111.00092 * 31.04641 * 10 8 3 32 32 H 1.09000 * 109.47308 * 59.99970 * 11 10 8 33 33 H 1.09005 * 109.47120 * 299.99809 * 11 10 8 34 34 H 1.09004 * 109.47039 * 299.99262 * 12 11 10 35 35 H 1.09000 * 109.47211 * 59.99796 * 12 11 10 36 36 H 0.97000 * 120.00043 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.7495 2.0304 -1.2036 5 6 2.0225 1.2930 -2.3969 6 6 3.4893 1.3212 0.4205 7 6 3.1723 2.6077 1.2010 8 6 1.7196 2.1092 1.2784 9 1 1.5163 1.4861 2.1492 10 7 0.7222 3.1714 1.0917 11 6 0.0551 3.4960 2.3596 12 6 -0.9745 4.6031 2.1254 13 6 -1.6593 4.9356 3.4260 14 1 -1.3875 4.4096 4.3292 15 6 -2.6327 5.9115 3.4628 16 7 -2.9632 6.5523 2.3630 17 14 -3.4820 6.3231 5.0748 18 1 -2.7292 7.3975 5.7707 19 1 -4.8661 6.7862 4.8010 20 1 -3.5258 5.1130 5.9344 21 1 -0.3633 0.4542 -0.9219 22 1 -0.3634 -1.0254 0.0676 23 1 -0.3634 0.5713 0.8542 24 1 1.4551 0.3623 -2.3867 25 1 1.7326 1.8857 -3.2645 26 1 3.0878 1.0686 -2.4496 27 1 3.7712 0.4826 1.0571 28 1 4.1780 1.4733 -0.4107 29 1 3.2912 3.5167 0.6112 30 1 3.6671 2.6633 2.1706 31 1 0.0496 2.9157 0.3844 32 1 0.7960 3.8355 3.0834 33 1 -0.4475 2.6081 2.7434 34 1 -0.4722 5.4911 1.7414 35 1 -1.7153 4.2631 1.4017 36 1 -3.6477 7.2391 2.3890 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926131125.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:15 Heat of formation + Delta-G solvation = -73.568959 kcal Electronic energy + Delta-G solvation = -16633.561061 eV Core-core repulsion = 13925.657092 eV Total energy + Delta-G solvation = -2707.903969 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30298 -36.32663 -36.02287 -34.37260 -32.46849 -29.00967 -27.20333 -26.73158 -24.76590 -23.79833 -22.84262 -20.56508 -19.54231 -17.73710 -16.53345 -16.12790 -15.90853 -14.85150 -14.61608 -14.49170 -14.39527 -14.08603 -13.76021 -13.15456 -12.51878 -12.31587 -12.21985 -11.84787 -11.54097 -11.39076 -11.02368 -10.93109 -10.86627 -10.65807 -10.47695 -10.00112 -9.90494 -9.82083 -9.26048 -9.08829 -8.33635 -7.78869 -5.97769 -4.00486 3.33295 3.39231 3.42280 3.44799 3.58603 4.42974 4.53294 4.61612 4.92532 4.94541 5.30457 5.33831 5.34504 5.38034 5.39187 5.43963 5.55909 5.61869 5.71577 5.74612 6.01605 6.13858 6.33277 6.34332 6.48262 6.52446 6.99913 7.35614 7.58309 7.75595 7.85885 7.98976 8.11530 8.45567 9.06872 9.63156 11.13645 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.041753 B = 0.005346 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.445561 B = 5236.094401 C = 5323.605528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.391 6.391 3 C 0.231 3.769 4 O -0.357 6.357 5 C 0.031 3.969 6 C -0.140 4.140 7 C -0.120 4.120 8 C 0.061 3.939 9 H 0.084 0.916 10 N -0.670 5.670 11 C 0.063 3.937 12 C 0.026 3.974 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.047 0.953 22 H 0.085 0.915 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.342 0.658 32 H 0.059 0.941 33 H 0.013 0.987 34 H 0.026 0.974 35 H 0.013 0.987 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.453 -12.430 -6.423 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.311 6.311 3 C 0.153 3.847 4 O -0.277 6.277 5 C -0.065 4.065 6 C -0.179 4.179 7 C -0.158 4.158 8 C -0.050 4.050 9 H 0.102 0.898 10 N -0.302 5.302 11 C -0.065 4.065 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.200 1.200 21 H 0.066 0.934 22 H 0.103 0.897 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.161 0.839 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.031 0.969 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.812 -11.759 -6.435 17.222 hybrid contribution -1.266 -0.581 0.876 1.645 sum 9.546 -12.339 -5.559 16.562 Atomic orbital electron populations 1.22714 0.80525 1.02526 1.01029 1.87989 1.20519 1.28473 1.94139 1.24450 0.93879 0.79917 0.86404 1.88145 1.87446 1.39029 1.13094 1.22654 0.99777 0.97004 0.87105 1.23380 0.94039 0.99511 1.00927 1.22865 0.95176 0.97255 1.00504 1.23706 0.95087 0.92017 0.94198 0.89846 1.60600 1.19195 1.39744 1.10635 1.22254 0.96615 0.98417 0.89188 1.19061 0.92263 0.93057 0.96793 1.21179 1.20217 1.19876 0.94768 0.92793 1.25001 0.96932 0.96125 0.96281 1.69973 1.31664 1.24684 1.26901 0.86591 0.78824 0.78643 0.83906 1.20618 1.21235 1.19954 0.93446 0.89655 0.93501 0.93581 0.89561 0.94147 0.88797 0.90232 0.88413 0.90882 0.83904 0.92255 0.96880 0.95545 0.96885 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.58 101.05 1.07 1.42 16 2 O -0.39 -5.44 9.71 -58.60 -0.57 -6.01 16 3 C 0.23 3.27 0.83 -25.92 -0.02 3.25 16 4 O -0.36 -5.29 9.54 -58.60 -0.56 -5.85 16 5 C 0.03 0.35 10.79 101.05 1.09 1.44 16 6 C -0.14 -1.69 7.68 -25.92 -0.20 -1.89 16 7 C -0.12 -1.63 7.81 -25.92 -0.20 -1.84 16 8 C 0.06 0.96 2.96 -66.90 -0.20 0.76 16 9 H 0.08 1.30 7.87 -51.93 -0.41 0.89 16 10 N -0.67 -12.65 6.28 -105.87 -0.67 -13.31 16 11 C 0.06 1.37 5.47 -3.83 -0.02 1.35 16 12 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 13 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 17 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H 0.05 0.59 7.80 -51.92 -0.41 0.18 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.65 7.43 -51.93 -0.39 0.26 16 24 H 0.05 0.50 7.05 -51.92 -0.37 0.14 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.40 7.94 -51.93 -0.41 -0.01 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.08 0.86 7.94 -51.93 -0.41 0.45 16 29 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.34 6.53 8.11 -39.29 -0.32 6.21 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.01 0.28 8.13 -51.93 -0.42 -0.15 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 299.05 15.07 4.51 4.51 Total: -1.00 -31.13 299.05 -6.66 -37.79 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.05 Total: 1.26 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 0.96 Total: -8.69 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.07 Total: -39.83 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.13 Total: -11.86 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.13 -6.66 -37.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926131125.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.777 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds