Wall clock time and date at job start Sun Mar 29 2020 21:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00243 * 2 1 4 4 O 1.42902 * 112.90523 * 293.88720 * 3 2 1 5 5 C 1.42904 * 113.99960 * 310.98895 * 4 3 2 6 6 C 1.53777 * 113.61477 * 162.63637 * 3 2 1 7 7 C 1.53782 * 87.07939 * 220.01484 * 6 3 2 8 8 C 1.53781 * 113.61490 * 65.13427 * 3 2 1 9 9 H 1.08995 * 113.61653 * 25.35759 * 8 3 2 10 10 N 1.46903 * 113.61700 * 254.53297 * 8 3 2 11 11 C 1.46894 * 110.99990 * 155.00447 * 10 8 3 12 12 C 1.52995 * 109.46995 * 180.02562 * 11 10 8 13 13 C 1.50706 * 109.47076 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99828 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99585 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00392 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99447 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47111 * 89.99894 * 17 15 13 19 19 H 1.48498 * 109.47126 * 209.99854 * 17 15 13 20 20 H 1.48498 * 109.47165 * 330.00155 * 17 15 13 21 21 H 1.09008 * 109.46931 * 63.77203 * 1 2 3 22 22 H 1.08995 * 109.47359 * 183.77252 * 1 2 3 23 23 H 1.08998 * 109.47709 * 303.77583 * 1 2 3 24 24 H 1.09007 * 109.46987 * 55.99971 * 5 4 3 25 25 H 1.09000 * 109.47234 * 175.99658 * 5 4 3 26 26 H 1.08995 * 109.46989 * 296.00176 * 5 4 3 27 27 H 1.08993 * 113.61512 * 334.56189 * 6 3 2 28 28 H 1.09005 * 113.61362 * 105.47399 * 6 3 2 29 29 H 1.08998 * 113.61543 * 270.88491 * 7 6 3 30 30 H 1.09002 * 113.61217 * 139.98265 * 7 6 3 31 31 H 1.00897 * 111.00092 * 31.04641 * 10 8 3 32 32 H 1.09000 * 109.47308 * 59.99970 * 11 10 8 33 33 H 1.09005 * 109.47120 * 299.99809 * 11 10 8 34 34 H 1.09004 * 109.47039 * 299.99262 * 12 11 10 35 35 H 1.09000 * 109.47211 * 59.99796 * 12 11 10 36 36 H 0.97000 * 120.00043 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.7495 2.0304 -1.2036 5 6 2.0225 1.2930 -2.3969 6 6 3.4893 1.3212 0.4205 7 6 3.1723 2.6077 1.2010 8 6 1.7196 2.1092 1.2784 9 1 1.5163 1.4861 2.1492 10 7 0.7222 3.1714 1.0917 11 6 0.0551 3.4960 2.3596 12 6 -0.9745 4.6031 2.1254 13 6 -1.6593 4.9356 3.4260 14 1 -1.3875 4.4096 4.3292 15 6 -2.6327 5.9115 3.4628 16 7 -2.9632 6.5523 2.3630 17 14 -3.4820 6.3231 5.0748 18 1 -2.7292 7.3975 5.7707 19 1 -4.8661 6.7862 4.8010 20 1 -3.5258 5.1130 5.9344 21 1 -0.3633 0.4542 -0.9219 22 1 -0.3634 -1.0254 0.0676 23 1 -0.3634 0.5713 0.8542 24 1 1.4551 0.3623 -2.3867 25 1 1.7326 1.8857 -3.2645 26 1 3.0878 1.0686 -2.4496 27 1 3.7712 0.4826 1.0571 28 1 4.1780 1.4733 -0.4107 29 1 3.2912 3.5167 0.6112 30 1 3.6671 2.6633 2.1706 31 1 0.0496 2.9157 0.3844 32 1 0.7960 3.8355 3.0834 33 1 -0.4475 2.6081 2.7434 34 1 -0.4722 5.4911 1.7414 35 1 -1.7153 4.2631 1.4017 36 1 -3.6477 7.2391 2.3890 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926131125.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:15 Heat of formation + Delta-G solvation = -95.502658 kcal Electronic energy + Delta-G solvation = -16634.512178 eV Core-core repulsion = 13925.657092 eV Total energy + Delta-G solvation = -2708.855086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.40232 -37.60438 -37.07868 -36.03585 -34.44001 -30.92042 -28.18752 -27.77139 -26.52551 -24.88168 -24.32399 -22.45099 -20.66571 -18.86168 -18.47885 -17.60647 -16.98252 -16.47197 -15.98759 -15.84419 -15.64339 -15.46725 -14.75796 -14.63470 -14.27374 -13.90014 -13.35311 -13.23617 -12.89210 -12.80505 -12.68575 -12.49285 -12.27706 -12.06308 -11.81586 -11.73456 -11.40383 -11.31622 -10.91634 -10.68024 -10.57430 -9.30951 -8.20693 -6.32856 1.40223 1.42231 1.53117 2.39415 2.42387 2.55921 3.12609 3.27762 3.55275 3.63371 3.82686 4.23614 4.36069 4.38316 4.46176 4.49045 4.51053 4.51926 4.60885 4.69789 4.81261 4.85751 4.97390 5.04632 5.09875 5.30028 5.44152 5.49705 5.65081 5.77146 6.10207 6.20805 6.41438 6.53157 6.84233 7.36634 8.91628 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.041753 B = 0.005346 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.445561 B = 5236.094401 C = 5323.605528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.393 6.393 3 C 0.230 3.770 4 O -0.383 6.383 5 C 0.027 3.973 6 C -0.124 4.124 7 C -0.117 4.117 8 C 0.047 3.953 9 H 0.086 0.914 10 N -0.675 5.675 11 C 0.083 3.917 12 C 0.033 3.967 13 C -0.545 4.545 14 H 0.061 0.939 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.969 3.031 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.262 1.262 21 H 0.045 0.955 22 H 0.110 0.890 23 H 0.030 0.970 24 H 0.047 0.953 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.337 0.663 32 H 0.060 0.940 33 H 0.017 0.983 34 H -0.007 1.007 35 H -0.012 1.012 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.217 -13.564 -5.623 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C 0.152 3.848 4 O -0.303 6.303 5 C -0.069 4.069 6 C -0.162 4.162 7 C -0.156 4.156 8 C -0.063 4.063 9 H 0.104 0.896 10 N -0.306 5.306 11 C -0.045 4.045 12 C -0.004 4.004 13 C -0.583 4.583 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.793 3.207 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 H 0.064 0.936 22 H 0.128 0.872 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.129 0.871 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.156 0.844 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.012 0.988 35 H 0.007 0.993 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.600 -12.912 -5.641 18.250 hybrid contribution -1.502 -0.241 0.548 1.617 sum 10.097 -13.153 -5.093 17.346 Atomic orbital electron populations 1.22793 0.80093 1.03806 1.00187 1.87987 1.20996 1.28277 1.94077 1.24484 0.95080 0.79571 0.85654 1.88109 1.87904 1.40152 1.14155 1.22833 1.00817 0.97037 0.86199 1.23344 0.92765 0.98899 1.01221 1.22825 0.93723 0.97594 1.01429 1.23938 0.94935 0.91791 0.95661 0.89638 1.60546 1.19181 1.41877 1.09037 1.21865 0.95411 0.96701 0.90556 1.18903 0.92626 0.93377 0.95527 1.21604 1.20766 1.20338 0.95628 0.92060 1.25999 0.97624 0.95799 1.00328 1.70114 1.32343 1.25280 1.29509 0.85392 0.77519 0.78823 0.78959 1.19689 1.20673 1.18645 0.93621 0.87201 0.95157 0.93432 0.88375 0.92666 0.87062 0.88676 0.89846 0.89405 0.84407 0.92130 0.96467 0.98826 0.99341 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.58 113.37 1.20 1.86 16 2 O -0.39 -10.29 9.71 -126.63 -1.23 -11.51 16 3 C 0.23 6.18 0.83 31.12 0.03 6.21 16 4 O -0.38 -10.99 9.54 -126.63 -1.21 -12.19 16 5 C 0.03 0.56 10.79 113.37 1.22 1.78 16 6 C -0.12 -2.67 7.68 31.12 0.24 -2.43 16 7 C -0.12 -3.03 7.81 31.12 0.24 -2.78 16 8 C 0.05 1.44 2.96 45.44 0.13 1.57 16 9 H 0.09 2.57 7.87 -2.39 -0.02 2.55 16 10 N -0.68 -25.81 6.28 -488.86 -3.07 -28.88 16 11 C 0.08 3.65 5.47 86.30 0.47 4.13 16 12 C 0.03 1.83 5.23 29.85 0.16 1.99 16 13 C -0.54 -31.73 9.11 25.60 0.23 -31.50 16 14 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 15 C 0.00 0.03 5.46 84.66 0.46 0.49 16 16 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 17 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 21 H 0.05 1.11 7.80 -2.38 -0.02 1.09 16 22 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.03 0.83 7.43 -2.39 -0.02 0.81 16 24 H 0.05 0.97 7.05 -2.38 -0.02 0.95 16 25 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 0.98 7.94 -2.39 -0.02 0.96 16 27 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.09 1.77 7.94 -2.38 -0.02 1.76 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.34 13.25 8.11 -89.70 -0.73 12.53 16 32 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.02 0.73 8.13 -2.38 -0.02 0.71 16 34 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 35 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -66.91 299.05 1.51 -65.41 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.32 Total: 16.80 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 4.39 Total: -18.69 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -2.79 Total: -86.55 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -2.44 Total: -23.71 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.91 1.51 -65.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926131125.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.097 kcal (2) G-P(sol) polarization free energy of solvation -66.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds