Wall clock time and date at job start Sun Mar 29 2020 21:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99966 * 2 1 4 4 H 1.08996 * 109.49918 * 30.08632 * 3 2 1 5 5 C 1.53118 * 109.50762 * 270.00083 * 3 2 1 6 6 C 1.53115 * 109.16068 * 182.36674 * 5 3 2 7 7 C 1.53035 * 109.28204 * 57.65160 * 6 5 3 8 8 N 1.46844 * 109.52430 * 300.82622 * 7 6 5 9 9 C 1.46897 * 111.00011 * 185.83889 * 8 7 6 10 10 C 1.53004 * 109.47509 * 164.04588 * 9 8 7 11 11 H 1.08996 * 109.47227 * 58.48957 * 10 9 8 12 12 O 1.42902 * 109.46614 * 298.49548 * 10 9 8 13 13 C 1.50693 * 109.47131 * 178.49573 * 10 9 8 14 14 H 1.07997 * 120.00476 * 359.97438 * 13 10 9 15 15 C 1.37884 * 119.99647 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99642 * 179.97438 * 15 13 10 17 17 Si 1.86797 * 120.00009 * 359.97438 * 15 13 10 18 18 H 1.48497 * 109.47080 * 269.99972 * 17 15 13 19 19 H 1.48495 * 109.47214 * 30.00097 * 17 15 13 20 20 H 1.48501 * 109.46865 * 150.00309 * 17 15 13 21 21 C 1.46844 * 111.20303 * 61.73486 * 8 7 6 22 22 H 1.08997 * 109.47261 * 299.99295 * 1 2 3 23 23 H 1.09005 * 109.47439 * 59.99729 * 1 2 3 24 24 H 1.09005 * 109.46912 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.51925 * 62.45995 * 5 3 2 26 26 H 1.08996 * 109.51858 * 302.26830 * 5 3 2 27 27 H 1.08999 * 109.50343 * 297.71244 * 6 5 3 28 28 H 1.09000 * 109.53517 * 177.61402 * 6 5 3 29 29 H 1.08999 * 109.46197 * 180.80485 * 7 6 5 30 30 H 1.09005 * 109.45037 * 60.83269 * 7 6 5 31 31 H 1.08999 * 109.47396 * 44.04195 * 9 8 7 32 32 H 1.08999 * 109.47424 * 284.04403 * 9 8 7 33 33 H 0.96704 * 113.99821 * 299.99477 * 12 10 9 34 34 H 0.97004 * 119.99765 * 180.02562 * 16 15 13 35 35 H 1.09008 * 109.45531 * 58.27846 * 21 8 7 36 36 H 1.08997 * 109.46472 * 178.24276 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3460 1.9994 0.5151 5 6 2.2181 1.7726 -1.4433 6 6 2.8950 3.1460 -1.4344 7 6 4.2205 3.0512 -0.6755 8 7 3.9679 2.6012 0.6992 9 6 5.2004 2.6312 1.4979 10 6 4.8472 2.5488 2.9843 11 1 4.2871 1.6333 3.1745 12 8 4.0511 3.6785 3.3479 13 6 6.1131 2.5423 3.8018 14 1 7.0736 2.5916 3.3104 15 6 6.0452 2.4725 5.1772 16 7 7.1500 2.4663 5.8906 17 14 4.3840 2.3866 6.0271 18 1 3.9069 3.7617 6.3215 19 1 3.4087 1.7036 5.1397 20 1 4.5159 1.6262 7.2958 21 6 3.3614 1.2640 0.7173 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.2533 1.8452 -1.9452 26 1 2.8509 1.0581 -1.9697 27 1 2.2447 3.8690 -0.9420 28 1 3.0844 3.4656 -2.4592 29 1 4.6981 4.0308 -0.6551 30 1 4.8754 2.3382 -1.1765 31 1 5.7373 3.5596 1.3029 32 1 5.8299 1.7837 1.2266 33 1 4.4875 4.5295 3.2051 34 1 7.1022 2.4168 6.8582 35 1 4.0205 0.5595 0.2100 36 1 3.2151 0.9455 1.7494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929502481.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:20 Heat of formation + Delta-G solvation = -122.669777 kcal Electronic energy + Delta-G solvation = -16881.830046 eV Core-core repulsion = 14171.796905 eV Total energy + Delta-G solvation = -2710.033140 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.51338 -38.58341 -37.28835 -34.44439 -33.91910 -31.23976 -30.34649 -27.40406 -27.06077 -24.46582 -23.54797 -21.99540 -20.86552 -19.43930 -17.59736 -17.00916 -16.90095 -16.44121 -16.33453 -16.01177 -15.57163 -15.28997 -14.92412 -14.41667 -14.34613 -14.02063 -13.68790 -13.39508 -12.95330 -12.80135 -12.67354 -12.56108 -12.07858 -11.92463 -11.70293 -11.68208 -11.53975 -11.12336 -10.88522 -10.49384 -10.30965 -9.21404 -8.38138 -6.52508 1.39422 1.42196 1.57755 2.37050 2.49755 2.97204 3.27029 3.76815 3.82391 4.02855 4.08908 4.15297 4.22741 4.40751 4.46955 4.51539 4.53505 4.59716 4.65584 4.77140 4.83661 4.90568 4.95795 4.97736 5.03568 5.15036 5.38092 5.43896 5.45131 6.03287 6.08371 6.15742 6.33596 6.60295 7.20074 7.35224 8.76009 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.007542 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.955832 B = 3711.878806 C = 4249.359504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.097 3.903 4 H 0.066 0.934 5 C -0.133 4.133 6 C -0.106 4.106 7 C 0.047 3.953 8 N -0.532 5.532 9 C 0.055 3.945 10 C 0.208 3.792 11 H 0.043 0.957 12 O -0.578 6.578 13 C -0.565 4.565 14 H 0.043 0.957 15 C 0.032 3.968 16 N -0.936 5.936 17 Si 0.975 3.025 18 H -0.272 1.272 19 H -0.268 1.268 20 H -0.302 1.302 21 C 0.059 3.941 22 H 0.042 0.958 23 H 0.057 0.943 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.026 0.974 33 H 0.372 0.628 34 H 0.269 0.731 35 H 0.030 0.970 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.812 -0.065 -15.419 20.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C 0.039 3.961 4 H 0.084 0.916 5 C -0.171 4.171 6 C -0.143 4.143 7 C -0.080 4.080 8 N -0.258 5.258 9 C -0.073 4.073 10 C 0.149 3.851 11 H 0.061 0.939 12 O -0.385 6.385 13 C -0.603 4.603 14 H 0.061 0.939 15 C -0.168 4.168 16 N -0.575 5.575 17 Si 0.803 3.197 18 H -0.198 1.198 19 H -0.193 1.193 20 H -0.230 1.230 21 C -0.069 4.069 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.117 0.883 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.219 0.781 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.394 -0.386 -14.919 20.053 hybrid contribution 0.777 -0.211 0.417 0.907 sum -12.616 -0.597 -14.502 19.231 Atomic orbital electron populations 1.22969 0.79371 1.03824 1.00766 1.87825 1.21633 1.28281 1.95265 1.22031 0.93661 0.84100 0.96334 0.91629 1.22026 1.02004 0.97554 0.95504 1.21519 0.95437 0.96523 1.00854 1.22285 0.97940 1.00485 0.87306 1.61784 1.26883 1.24477 1.12620 1.22503 0.89719 1.00722 0.94350 1.19603 0.88828 0.86326 0.90297 0.93911 1.86303 1.46793 1.17125 1.88237 1.21868 0.93658 1.52441 0.92323 0.93904 1.25774 1.00063 0.92564 0.98414 1.70064 1.29704 1.50797 1.06939 0.85277 0.79827 0.78519 0.76113 1.19767 1.19321 1.23008 1.21971 0.95232 0.89828 0.99898 0.93980 0.92478 0.88291 0.89932 0.91798 0.91042 0.88647 0.89805 0.95205 0.90260 0.95622 0.78059 0.92240 0.95144 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.82 113.37 1.23 1.75 16 2 O -0.41 -11.52 10.35 -148.98 -1.54 -13.06 16 3 C 0.10 2.68 2.77 30.65 0.08 2.77 16 4 H 0.07 1.85 7.79 -2.39 -0.02 1.84 16 5 C -0.13 -2.87 5.62 30.67 0.17 -2.70 16 6 C -0.11 -2.14 6.09 30.64 0.19 -1.96 16 7 C 0.05 1.23 5.44 86.33 0.47 1.70 16 8 N -0.53 -17.89 4.51 -896.37 -4.04 -21.93 16 9 C 0.05 2.17 4.57 86.31 0.39 2.56 16 10 C 0.21 9.87 2.31 29.85 0.07 9.94 16 11 H 0.04 2.19 5.65 -2.39 -0.01 2.17 16 12 O -0.58 -26.20 10.93 -148.98 -1.63 -27.83 16 13 C -0.56 -32.05 9.34 25.60 0.24 -31.82 16 14 H 0.04 2.63 7.99 -2.91 -0.02 2.61 16 15 C 0.03 1.88 5.47 84.66 0.46 2.35 16 16 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 17 Si 0.97 48.90 26.18 68.60 1.80 50.69 16 18 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 19 H -0.27 -13.38 6.54 99.48 0.65 -12.73 16 20 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 21 C 0.06 2.01 4.96 86.33 0.43 2.44 16 22 H 0.04 0.82 8.09 -2.39 -0.02 0.80 16 23 H 0.06 0.89 7.94 -2.38 -0.02 0.88 16 24 H 0.10 1.58 8.14 -2.38 -0.02 1.57 16 25 H 0.08 1.45 7.93 -2.39 -0.02 1.43 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 29 H 0.08 2.03 7.96 -2.39 -0.02 2.01 16 30 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.08 2.97 7.87 -2.39 -0.02 2.95 16 32 H 0.03 1.05 8.06 -2.39 -0.02 1.03 16 33 H 0.37 14.76 9.04 -74.05 -0.67 14.09 16 34 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.06 2.19 6.47 -2.39 -0.02 2.17 16 Total: -1.00 -66.93 286.01 -1.06 -67.99 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.32 Total: 15.04 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 3.73 Total: -12.98 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -3.74 Total: -79.86 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -3.17 Total: -40.89 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 1.80 Total: 50.69 kcal Total: -66.93 -1.06 -67.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929502481.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.681 kcal (2) G-P(sol) polarization free energy of solvation -66.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds