Wall clock time and date at job start Sun Mar 29 2020 21:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00395 * 2 1 4 4 H 1.09001 * 109.50350 * 329.92430 * 3 2 1 5 5 C 1.53127 * 109.50270 * 89.99815 * 3 2 1 6 6 C 1.53123 * 109.15765 * 177.63699 * 5 3 2 7 7 C 1.53036 * 109.28072 * 302.34592 * 6 5 3 8 8 N 1.46844 * 109.52204 * 59.17767 * 7 6 5 9 9 C 1.46900 * 111.00263 * 174.16084 * 8 7 6 10 10 C 1.53002 * 109.46891 * 293.88326 * 9 8 7 11 11 H 1.09003 * 109.47455 * 60.66203 * 10 9 8 12 12 O 1.42902 * 109.47279 * 300.65756 * 10 9 8 13 13 C 1.50703 * 109.47094 * 180.65921 * 10 9 8 14 14 H 1.07997 * 119.99900 * 359.97438 * 13 10 9 15 15 C 1.37883 * 120.00173 * 180.02562 * 13 10 9 16 16 N 1.31513 * 119.99986 * 180.02562 * 15 13 10 17 17 Si 1.86802 * 119.99872 * 359.97438 * 15 13 10 18 18 H 1.48497 * 109.46942 * 270.00364 * 17 15 13 19 19 H 1.48501 * 109.46783 * 30.00379 * 17 15 13 20 20 H 1.48496 * 109.46869 * 149.99990 * 17 15 13 21 21 C 1.46846 * 111.20313 * 298.26003 * 8 7 6 22 22 H 1.09009 * 109.46935 * 300.00192 * 1 2 3 23 23 H 1.09004 * 109.47360 * 59.99404 * 1 2 3 24 24 H 1.09001 * 109.47800 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.51843 * 57.73592 * 5 3 2 26 26 H 1.08999 * 109.52274 * 297.54060 * 5 3 2 27 27 H 1.09002 * 109.49840 * 182.40857 * 6 5 3 28 28 H 1.08996 * 109.50269 * 62.29024 * 6 5 3 29 29 H 1.09006 * 109.46059 * 299.17026 * 7 6 5 30 30 H 1.08992 * 109.46543 * 179.19998 * 7 6 5 31 31 H 1.08999 * 109.47764 * 173.88501 * 9 8 7 32 32 H 1.08997 * 109.46948 * 53.87864 * 9 8 7 33 33 H 0.96694 * 113.99839 * 300.00167 * 12 10 9 34 34 H 0.96993 * 119.99694 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.46243 * 181.75600 * 21 8 7 36 36 H 1.08994 * 109.46129 * 301.72552 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3461 1.9995 -0.5149 5 6 2.2182 1.7724 1.4434 6 6 2.8951 3.1459 1.4346 7 6 4.2207 3.0511 0.6758 8 7 3.9680 2.6012 -0.6990 9 6 5.2005 2.6311 -1.4977 10 6 5.6619 4.0797 -1.6694 11 1 5.8640 4.5151 -0.6908 12 8 4.6374 4.8317 -2.3230 13 6 6.9174 4.1117 -2.5024 14 1 7.3438 3.1908 -2.8720 15 6 7.5223 5.3165 -2.7918 16 7 8.6176 5.3443 -3.5192 17 14 6.7851 6.9092 -2.1520 18 1 5.8166 7.4401 -3.1446 19 1 6.0860 6.6501 -0.8677 20 1 7.8668 7.9031 -1.9351 21 6 3.3615 1.2639 -0.7172 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 2.8509 1.0579 1.9698 26 1 1.2533 1.8450 1.9453 27 1 3.0845 3.4647 2.4596 28 1 2.2448 3.8689 0.9423 29 1 4.8756 2.3380 1.1766 30 1 4.6984 4.0305 0.6554 31 1 5.0098 2.1921 -2.4770 32 1 5.9772 2.0603 -0.9887 33 1 4.4057 4.5000 -3.2012 34 1 9.0429 6.1919 -3.7231 35 1 3.2152 0.9455 -1.7494 36 1 4.0205 0.5594 -0.2099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929502482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:22 Heat of formation + Delta-G solvation = -97.408958 kcal Electronic energy + Delta-G solvation = -16792.225686 eV Core-core repulsion = 14083.287937 eV Total energy + Delta-G solvation = -2708.937749 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.33389 -37.31188 -35.63390 -32.63772 -32.23683 -30.19568 -28.46354 -26.56437 -25.34137 -22.75207 -22.69178 -20.26352 -19.65527 -17.43792 -16.45444 -15.77768 -15.26065 -14.95451 -14.86730 -14.62028 -14.16218 -13.70782 -13.32967 -13.24387 -12.95995 -12.64463 -12.45192 -11.82929 -11.51939 -11.14208 -10.95836 -10.94035 -10.77463 -10.65077 -10.53396 -10.39153 -9.74300 -9.50578 -9.12189 -8.65016 -8.41338 -7.81388 -6.13049 -4.24954 3.45791 3.49520 3.55322 3.62679 4.49914 4.50974 4.82941 4.88785 5.11041 5.15616 5.19250 5.25121 5.36810 5.44200 5.55060 5.65585 5.77201 5.81675 5.84115 5.95922 5.99040 6.01860 6.15937 6.28498 6.29831 6.45400 6.61824 7.11941 7.30343 7.38808 7.59523 7.69030 8.29122 8.83319 9.09961 9.50816 10.97433 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.048680 B = 0.006264 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.043029 B = 4469.047679 C = 4680.371610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.389 6.389 3 C 0.092 3.908 4 H 0.069 0.931 5 C -0.139 4.139 6 C -0.113 4.113 7 C 0.051 3.949 8 N -0.527 5.527 9 C 0.042 3.958 10 C 0.199 3.801 11 H 0.058 0.942 12 O -0.576 6.576 13 C -0.564 4.564 14 H 0.073 0.927 15 C 0.082 3.918 16 N -0.894 5.894 17 Si 0.917 3.083 18 H -0.278 1.278 19 H -0.269 1.269 20 H -0.307 1.307 21 C 0.060 3.940 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.360 0.640 34 H 0.265 0.735 35 H 0.077 0.923 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.196 -7.092 8.389 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C 0.035 3.965 4 H 0.088 0.912 5 C -0.177 4.177 6 C -0.151 4.151 7 C -0.077 4.077 8 N -0.253 5.253 9 C -0.085 4.085 10 C 0.142 3.858 11 H 0.076 0.924 12 O -0.381 6.381 13 C -0.602 4.602 14 H 0.091 0.909 15 C -0.122 4.122 16 N -0.531 5.531 17 Si 0.746 3.254 18 H -0.204 1.204 19 H -0.193 1.193 20 H -0.235 1.235 21 C -0.068 4.068 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.206 0.794 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.258 -6.508 8.658 17.906 hybrid contribution 0.173 0.042 0.125 0.217 sum -14.086 -6.466 8.784 17.815 Atomic orbital electron populations 1.22744 0.81336 1.02336 0.99914 1.87853 1.19439 1.28368 1.95092 1.22121 0.95255 0.83786 0.95383 0.91246 1.22070 1.00798 0.97742 0.97100 1.21536 0.97187 0.96515 0.99880 1.22146 0.96063 1.01187 0.88305 1.61844 1.28598 1.23062 1.11789 1.22825 0.88125 1.00959 0.96585 1.19876 0.85903 0.85981 0.94079 0.92421 1.86355 1.59322 1.58439 1.33978 1.21553 1.09056 0.95159 1.34435 0.90925 1.25013 0.93789 0.99914 0.93521 1.69960 1.18870 1.26897 1.37366 0.86200 0.77177 0.81545 0.80435 1.20385 1.19346 1.23502 1.21976 0.93739 0.90695 1.00424 0.94299 0.93997 0.89926 0.91615 0.92170 0.91488 0.90954 0.95319 0.89769 0.91091 0.94800 0.79438 0.92527 0.90474 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.39 -5.16 10.35 -35.23 -0.36 -5.52 16 3 C 0.09 1.25 2.77 -26.65 -0.07 1.17 16 4 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 5 C -0.14 -1.72 5.62 -26.60 -0.15 -1.87 16 6 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 7 C 0.05 0.82 5.29 -3.84 -0.02 0.80 16 8 N -0.53 -9.17 4.51 -234.68 -1.06 -10.23 16 9 C 0.04 0.84 4.57 -3.82 -0.02 0.82 16 10 C 0.20 4.68 2.17 -27.88 -0.06 4.61 16 11 H 0.06 1.41 5.53 -51.93 -0.29 1.13 16 12 O -0.58 -13.27 10.89 -35.23 -0.38 -13.65 16 13 C -0.56 -15.66 9.34 -34.44 -0.32 -15.98 16 14 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 16 N -0.89 -27.23 13.96 55.43 0.77 -26.45 16 17 Si 0.92 23.36 26.18 -169.99 -4.45 18.91 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.77 6.54 56.52 0.37 -6.40 16 20 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 21 C 0.06 0.92 5.11 -3.84 -0.02 0.90 16 22 H 0.04 0.33 7.94 -51.92 -0.41 -0.08 16 23 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.65 7.93 -51.93 -0.41 0.24 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.50 6.24 -51.93 -0.32 1.18 16 31 H 0.07 1.39 7.98 -51.93 -0.41 0.97 16 32 H 0.03 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.36 7.41 9.04 45.56 0.41 7.82 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.08 1.17 8.01 -51.93 -0.42 0.76 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 285.71 15.07 4.31 4.31 Total: -1.00 -30.89 285.71 -6.23 -37.12 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.22 Total: 3.03 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 0.17 Total: -7.51 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: -0.28 Total: -36.68 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.75 Total: -19.17 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.45 Total: 18.91 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.89 -6.23 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929502482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.292 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds