Wall clock time and date at job start Sun Mar 29 2020 21:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00395 * 2 1 4 4 H 1.09001 * 109.50350 * 329.92430 * 3 2 1 5 5 C 1.53127 * 109.50270 * 89.99815 * 3 2 1 6 6 C 1.53123 * 109.15765 * 177.63699 * 5 3 2 7 7 C 1.53036 * 109.28072 * 302.34592 * 6 5 3 8 8 N 1.46844 * 109.52204 * 59.17767 * 7 6 5 9 9 C 1.46900 * 111.00263 * 174.16084 * 8 7 6 10 10 C 1.53002 * 109.46891 * 293.88326 * 9 8 7 11 11 H 1.09003 * 109.47455 * 60.66203 * 10 9 8 12 12 O 1.42902 * 109.47279 * 300.65756 * 10 9 8 13 13 C 1.50703 * 109.47094 * 180.65921 * 10 9 8 14 14 H 1.07997 * 119.99900 * 359.97438 * 13 10 9 15 15 C 1.37883 * 120.00173 * 180.02562 * 13 10 9 16 16 N 1.31513 * 119.99986 * 180.02562 * 15 13 10 17 17 Si 1.86802 * 119.99872 * 359.97438 * 15 13 10 18 18 H 1.48497 * 109.46942 * 270.00364 * 17 15 13 19 19 H 1.48501 * 109.46783 * 30.00379 * 17 15 13 20 20 H 1.48496 * 109.46869 * 149.99990 * 17 15 13 21 21 C 1.46846 * 111.20313 * 298.26003 * 8 7 6 22 22 H 1.09009 * 109.46935 * 300.00192 * 1 2 3 23 23 H 1.09004 * 109.47360 * 59.99404 * 1 2 3 24 24 H 1.09001 * 109.47800 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.51843 * 57.73592 * 5 3 2 26 26 H 1.08999 * 109.52274 * 297.54060 * 5 3 2 27 27 H 1.09002 * 109.49840 * 182.40857 * 6 5 3 28 28 H 1.08996 * 109.50269 * 62.29024 * 6 5 3 29 29 H 1.09006 * 109.46059 * 299.17026 * 7 6 5 30 30 H 1.08992 * 109.46543 * 179.19998 * 7 6 5 31 31 H 1.08999 * 109.47764 * 173.88501 * 9 8 7 32 32 H 1.08997 * 109.46948 * 53.87864 * 9 8 7 33 33 H 0.96694 * 113.99839 * 300.00167 * 12 10 9 34 34 H 0.96993 * 119.99694 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.46243 * 181.75600 * 21 8 7 36 36 H 1.08994 * 109.46129 * 301.72552 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3461 1.9995 -0.5149 5 6 2.2182 1.7724 1.4434 6 6 2.8951 3.1459 1.4346 7 6 4.2207 3.0511 0.6758 8 7 3.9680 2.6012 -0.6990 9 6 5.2005 2.6311 -1.4977 10 6 5.6619 4.0797 -1.6694 11 1 5.8640 4.5151 -0.6908 12 8 4.6374 4.8317 -2.3230 13 6 6.9174 4.1117 -2.5024 14 1 7.3438 3.1908 -2.8720 15 6 7.5223 5.3165 -2.7918 16 7 8.6176 5.3443 -3.5192 17 14 6.7851 6.9092 -2.1520 18 1 5.8166 7.4401 -3.1446 19 1 6.0860 6.6501 -0.8677 20 1 7.8668 7.9031 -1.9351 21 6 3.3615 1.2639 -0.7172 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 2.8509 1.0579 1.9698 26 1 1.2533 1.8450 1.9453 27 1 3.0845 3.4647 2.4596 28 1 2.2448 3.8689 0.9423 29 1 4.8756 2.3380 1.1766 30 1 4.6984 4.0305 0.6554 31 1 5.0098 2.1921 -2.4770 32 1 5.9772 2.0603 -0.9887 33 1 4.4057 4.5000 -3.2012 34 1 9.0429 6.1919 -3.7231 35 1 3.2152 0.9455 -1.7494 36 1 4.0205 0.5594 -0.2099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929502482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:22 Heat of formation + Delta-G solvation = -121.903200 kcal Electronic energy + Delta-G solvation = -16793.287836 eV Core-core repulsion = 14083.287937 eV Total energy + Delta-G solvation = -2709.999899 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.51135 -38.63045 -37.21476 -34.43608 -33.91145 -31.37971 -30.20866 -27.41150 -27.04271 -24.19497 -23.90323 -21.92466 -20.84887 -19.44012 -17.57354 -16.98202 -16.82592 -16.49921 -16.25108 -16.05616 -15.62078 -15.14126 -14.89899 -14.65158 -14.37055 -13.98107 -13.60325 -13.43896 -12.91082 -12.79839 -12.61335 -12.58594 -12.04856 -11.92819 -11.76597 -11.66016 -11.53787 -11.04309 -10.87185 -10.50832 -10.29488 -9.23026 -8.36885 -6.52007 1.41394 1.44906 1.59530 2.38445 2.49165 2.98399 3.28536 3.76673 3.82702 4.01245 4.08717 4.16316 4.23460 4.40579 4.48721 4.52008 4.55083 4.59053 4.64850 4.76421 4.87002 4.89010 4.94412 4.98625 5.02469 5.13985 5.36079 5.45351 5.45945 6.06197 6.09033 6.11812 6.34171 6.61076 7.20042 7.34652 8.77418 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.048680 B = 0.006264 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.043029 B = 4469.047679 C = 4680.371610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.098 3.902 4 H 0.071 0.929 5 C -0.133 4.133 6 C -0.106 4.106 7 C 0.046 3.954 8 N -0.530 5.530 9 C 0.054 3.946 10 C 0.209 3.791 11 H 0.052 0.948 12 O -0.577 6.577 13 C -0.567 4.567 14 H 0.040 0.960 15 C 0.032 3.968 16 N -0.938 5.938 17 Si 0.977 3.023 18 H -0.274 1.274 19 H -0.262 1.262 20 H -0.303 1.303 21 C 0.060 3.940 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.371 0.629 34 H 0.269 0.731 35 H 0.074 0.926 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.424 -6.953 9.730 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C 0.040 3.960 4 H 0.089 0.911 5 C -0.171 4.171 6 C -0.144 4.144 7 C -0.082 4.082 8 N -0.256 5.256 9 C -0.074 4.074 10 C 0.151 3.849 11 H 0.070 0.930 12 O -0.384 6.384 13 C -0.605 4.605 14 H 0.058 0.942 15 C -0.168 4.168 16 N -0.577 5.577 17 Si 0.805 3.195 18 H -0.200 1.200 19 H -0.187 1.187 20 H -0.231 1.231 21 C -0.068 4.068 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.117 0.883 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.219 0.781 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.509 -6.384 10.003 20.332 hybrid contribution 0.852 -0.100 -0.326 0.918 sum -15.657 -6.484 9.677 19.515 Atomic orbital electron populations 1.22973 0.79372 1.03805 1.00815 1.87824 1.21573 1.28024 1.95232 1.21995 0.93962 0.84203 0.95851 0.91132 1.22027 1.01785 0.96889 0.96420 1.21499 0.95271 0.97115 1.00474 1.22227 0.97980 1.00016 0.87970 1.61791 1.26897 1.24482 1.12390 1.22502 0.89288 0.98321 0.97255 1.19628 0.84392 0.88171 0.92736 0.93046 1.86292 1.58613 1.58593 1.34862 1.21874 1.10523 0.93819 1.34291 0.94205 1.25800 0.94091 1.03163 0.93781 1.70068 1.20518 1.27881 1.39203 0.85243 0.76449 0.77827 0.80018 1.19981 1.18697 1.23090 1.22000 0.94850 0.89251 1.00733 0.92991 0.93472 0.88287 0.91854 0.89944 0.89351 0.91205 0.95191 0.91690 0.91075 0.95600 0.78121 0.92241 0.90706 0.95225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.82 113.37 1.23 1.66 16 2 O -0.41 -9.85 10.35 -148.98 -1.54 -11.39 16 3 C 0.10 2.42 2.77 30.65 0.08 2.50 16 4 H 0.07 1.72 7.79 -2.39 -0.02 1.71 16 5 C -0.13 -2.90 5.62 30.68 0.17 -2.73 16 6 C -0.11 -2.51 6.09 30.65 0.19 -2.32 16 7 C 0.05 1.42 5.29 86.33 0.46 1.88 16 8 N -0.53 -17.83 4.51 -896.39 -4.04 -21.87 16 9 C 0.05 2.15 4.57 86.30 0.39 2.54 16 10 C 0.21 9.71 2.17 29.85 0.06 9.78 16 11 H 0.05 2.49 5.53 -2.39 -0.01 2.48 16 12 O -0.58 -25.76 10.89 -148.98 -1.62 -27.38 16 13 C -0.57 -31.92 9.34 25.60 0.24 -31.68 16 14 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 15 C 0.03 1.84 5.47 84.66 0.46 2.31 16 16 N -0.94 -58.04 13.96 21.45 0.30 -57.74 16 17 Si 0.98 47.88 26.18 68.60 1.80 49.68 16 18 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.26 -12.51 6.54 99.48 0.65 -11.86 16 20 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 21 C 0.06 1.76 5.11 86.33 0.44 2.20 16 22 H 0.05 0.71 7.94 -2.38 -0.02 0.69 16 23 H 0.05 0.72 8.09 -2.39 -0.02 0.70 16 24 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.46 7.93 -2.39 -0.02 1.44 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.06 2.25 6.24 -2.39 -0.01 2.24 16 31 H 0.07 2.78 7.98 -2.39 -0.02 2.76 16 32 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 33 H 0.37 14.79 9.04 -74.06 -0.67 14.12 16 34 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 35 H 0.07 2.20 8.01 -2.39 -0.02 2.19 16 36 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -65.29 285.71 -1.06 -66.34 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.32 Total: 16.22 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 3.73 Total: -13.87 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -3.74 Total: -79.60 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -3.16 Total: -38.77 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.80 Total: 49.68 kcal Total: -65.29 -1.06 -66.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929502482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.559 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds