Wall clock time and date at job start Sun Mar 29 2020 21:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00141 * 2 1 4 4 C 1.53002 * 109.47246 * 293.95232 * 3 2 1 5 5 H 1.09000 * 109.46986 * 60.00111 * 4 3 2 6 6 O 1.42898 * 109.47113 * 300.00070 * 4 3 2 7 7 C 1.50706 * 109.46931 * 179.97438 * 4 3 2 8 8 H 1.07999 * 120.00193 * 0.02562 * 7 4 3 9 9 C 1.37879 * 119.99398 * 180.02562 * 7 4 3 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 4 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 4 12 12 H 1.48503 * 109.46845 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 299.99813 * 11 9 7 14 14 H 1.48498 * 109.47295 * 60.00420 * 11 9 7 15 15 C 1.46903 * 111.00085 * 123.95836 * 2 1 3 16 16 C 1.52990 * 109.47348 * 66.04289 * 15 2 1 17 17 H 1.09007 * 109.47477 * 304.99956 * 16 15 2 18 18 O 1.42897 * 109.47204 * 65.00308 * 16 15 2 19 19 C 1.52998 * 109.47282 * 185.00168 * 16 15 2 20 20 C 1.53003 * 117.50147 * 248.74781 * 19 16 15 21 21 C 1.53006 * 117.49937 * 180.08517 * 19 16 15 22 22 H 1.09000 * 109.46850 * 59.99666 * 1 2 3 23 23 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46988 * 300.00026 * 1 2 3 25 25 H 1.09004 * 109.47535 * 173.95380 * 3 2 1 26 26 H 1.08996 * 109.47194 * 53.95702 * 3 2 1 27 27 H 0.96701 * 113.99881 * 299.99463 * 6 4 3 28 28 H 0.97000 * 119.99706 * 359.97438 * 10 9 7 29 29 H 1.09004 * 109.47324 * 186.04661 * 15 2 1 30 30 H 1.09004 * 109.46708 * 306.04257 * 15 2 1 31 31 H 0.96695 * 114.00157 * 60.00110 * 18 16 15 32 32 H 1.09003 * 115.54975 * 34.42299 * 19 16 15 33 33 H 1.09002 * 117.49446 * 359.97438 * 20 19 16 34 34 H 1.08994 * 117.49789 * 145.02242 * 20 19 16 35 35 H 1.08999 * 117.49592 * 214.97743 * 21 19 16 36 36 H 1.08995 * 117.50021 * 0.02562 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 1 0.5473 2.0845 -1.4265 6 8 2.2010 1.3286 -2.4076 7 6 2.1711 3.4646 -1.3180 8 1 2.7192 3.8326 -0.4632 9 6 1.9651 4.2821 -2.4090 10 7 1.2972 3.8341 -3.4496 11 14 2.6345 6.0260 -2.4088 12 1 2.2801 6.6923 -3.6878 13 1 2.0433 6.7832 -1.2764 14 1 4.1118 5.9891 -2.2621 15 6 1.9955 -0.7661 1.1375 16 6 1.6315 -2.2426 0.9703 17 1 0.5531 -2.3389 0.8433 18 8 2.2956 -2.7696 -0.1800 19 6 2.0700 -3.0199 2.2130 20 6 3.2246 -4.0113 2.0553 21 6 1.7942 -4.5247 2.2388 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.0798 1.3444 0.1082 26 1 1.5612 1.9273 0.8309 27 1 3.1653 1.2641 -2.3763 28 1 0.9500 2.9284 -3.4497 29 1 3.0798 -0.6612 1.1756 30 1 1.5611 -0.3873 2.0628 31 1 3.2601 -2.7167 -0.1360 32 1 1.9966 -2.4786 3.1563 33 1 3.6716 -4.1100 1.0660 34 1 3.9107 -4.1225 2.8949 35 1 1.5400 -4.9733 3.1991 36 1 1.3008 -4.9610 1.3704 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929805534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:11 Heat of formation + Delta-G solvation = -77.669338 kcal Electronic energy + Delta-G solvation = -16498.800326 eV Core-core repulsion = 13790.718551 eV Total energy + Delta-G solvation = -2708.081775 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.12625 -37.20976 -35.28255 -34.52987 -32.01643 -29.76506 -27.90672 -26.04390 -24.01470 -22.61826 -21.72631 -20.46596 -20.14143 -17.30324 -16.77307 -16.05384 -15.45017 -15.17764 -14.83601 -14.15250 -13.75691 -13.66519 -13.35846 -13.03531 -12.49578 -12.20481 -11.85010 -11.65201 -11.35905 -11.30090 -11.13784 -10.83962 -10.66856 -10.63011 -10.18490 -10.09634 -10.02343 -9.77454 -9.12368 -8.43615 -7.97083 -7.67748 -6.31939 -4.15355 3.43011 3.44506 3.57715 3.63912 4.11612 4.52615 4.58523 4.73520 4.76052 4.79995 5.16267 5.24020 5.39283 5.42347 5.47141 5.63033 5.68817 5.80957 5.84759 5.95940 5.98300 6.05300 6.09819 6.12512 6.38700 6.46091 6.68787 7.40343 7.54096 7.65404 7.82059 8.06770 8.38573 8.89351 9.29015 9.71519 11.08170 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.060052 B = 0.005097 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.151424 B = 5491.950070 C = 5549.185582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.522 5.522 3 C 0.038 3.962 4 C 0.221 3.779 5 H 0.047 0.953 6 O -0.569 6.569 7 C -0.653 4.653 8 H 0.047 0.953 9 C 0.035 3.965 10 N -0.892 5.892 11 Si 1.066 2.934 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.288 1.288 15 C 0.026 3.974 16 C 0.141 3.859 17 H 0.100 0.900 18 O -0.544 6.544 19 C -0.192 4.192 20 C -0.178 4.178 21 C -0.171 4.171 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.015 0.985 25 H 0.062 0.938 26 H 0.025 0.975 27 H 0.350 0.650 28 H 0.285 0.715 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.369 0.631 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 -12.407 11.570 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.246 5.246 3 C -0.089 4.089 4 C 0.163 3.837 5 H 0.065 0.935 6 O -0.372 6.372 7 C -0.691 4.691 8 H 0.065 0.935 9 C -0.174 4.174 10 N -0.526 5.526 11 Si 0.895 3.105 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.214 1.214 15 C -0.103 4.103 16 C 0.081 3.919 17 H 0.118 0.882 18 O -0.349 6.349 19 C -0.211 4.211 20 C -0.214 4.214 21 C -0.208 4.208 22 H 0.093 0.907 23 H 0.078 0.922 24 H 0.034 0.966 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.195 0.805 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.217 0.783 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.179 -11.427 9.861 15.139 hybrid contribution 0.780 -0.698 2.421 2.637 sum 1.959 -12.125 12.281 17.369 Atomic orbital electron populations 1.22410 0.88240 1.00859 1.00803 1.61941 1.07311 1.14889 1.40429 1.22948 0.98998 0.86275 1.00687 1.19473 0.94282 0.88743 0.81178 0.93515 1.86476 1.23180 1.77593 1.49996 1.22454 1.41961 0.98942 1.05793 0.93493 1.25763 0.94713 1.04620 0.92301 1.70624 1.31394 1.20866 1.29756 0.83609 0.75985 0.74930 0.76001 1.20715 1.21561 1.21440 1.22787 1.00516 0.94283 0.92685 1.21409 0.97369 0.90138 0.82936 0.88214 1.86621 1.23221 1.83850 1.41202 1.23189 1.04595 0.92471 1.00843 1.22950 0.91480 1.03765 1.03252 1.22903 0.99119 0.95841 1.02966 0.90660 0.92158 0.96607 0.91920 0.95656 0.80520 0.90319 0.90918 0.94972 0.78302 0.87548 0.88106 0.89018 0.89137 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.13 60.06 0.55 0.99 16 2 N -0.52 -9.66 4.58 -242.92 -1.11 -10.77 16 3 C 0.04 0.81 4.56 -3.83 -0.02 0.80 16 4 C 0.22 5.68 2.30 -27.88 -0.06 5.62 16 5 H 0.05 1.30 6.42 -51.93 -0.33 0.97 16 6 O -0.57 -14.92 11.88 -35.23 -0.42 -15.34 16 7 C -0.65 -18.42 8.76 -34.44 -0.30 -18.72 16 8 H 0.05 1.30 7.74 -52.49 -0.41 0.89 16 9 C 0.03 1.01 5.40 -17.82 -0.10 0.91 16 10 N -0.89 -27.62 13.53 55.43 0.75 -26.87 16 11 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.03 0.38 4.58 -3.83 -0.02 0.36 16 16 C 0.14 1.82 3.29 -26.74 -0.09 1.73 16 17 H 0.10 1.36 6.26 -51.92 -0.33 1.04 16 18 O -0.54 -7.73 12.44 -35.23 -0.44 -8.17 16 19 C -0.19 -1.98 5.70 -90.62 -0.52 -2.50 16 20 C -0.18 -1.62 9.74 -26.69 -0.26 -1.88 16 21 C -0.17 -1.62 10.19 -26.69 -0.27 -1.89 16 22 H 0.07 1.49 6.47 -51.93 -0.34 1.16 16 23 H 0.06 0.94 6.21 -51.93 -0.32 0.61 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 26 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 27 H 0.35 8.37 9.04 45.56 0.41 8.78 16 28 H 0.28 9.02 6.47 -40.82 -0.26 8.76 16 29 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 30 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 31 H 0.37 4.23 7.56 45.56 0.34 4.57 16 32 H 0.11 1.03 8.11 -51.93 -0.42 0.61 16 33 H 0.10 0.91 6.37 -51.93 -0.33 0.58 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 292.64 15.07 4.41 4.41 Total: -1.00 -31.94 292.64 -7.11 -39.05 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.14 Total: 12.18 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -1.09 Total: -14.58 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.36 Total: -37.64 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.86 Total: -23.51 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.94 -7.11 -39.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929805534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.618 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds