Wall clock time and date at job start Sun Mar 29 2020 21:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00141 * 2 1 4 4 C 1.53002 * 109.47246 * 293.95232 * 3 2 1 5 5 H 1.09000 * 109.46986 * 60.00111 * 4 3 2 6 6 O 1.42898 * 109.47113 * 300.00070 * 4 3 2 7 7 C 1.50706 * 109.46931 * 179.97438 * 4 3 2 8 8 H 1.07999 * 120.00193 * 0.02562 * 7 4 3 9 9 C 1.37879 * 119.99398 * 180.02562 * 7 4 3 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 4 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 4 12 12 H 1.48503 * 109.46845 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 299.99813 * 11 9 7 14 14 H 1.48498 * 109.47295 * 60.00420 * 11 9 7 15 15 C 1.46903 * 111.00085 * 123.95836 * 2 1 3 16 16 C 1.52990 * 109.47348 * 66.04289 * 15 2 1 17 17 H 1.09007 * 109.47477 * 304.99956 * 16 15 2 18 18 O 1.42897 * 109.47204 * 65.00308 * 16 15 2 19 19 C 1.52998 * 109.47282 * 185.00168 * 16 15 2 20 20 C 1.53003 * 117.50147 * 248.74781 * 19 16 15 21 21 C 1.53006 * 117.49937 * 180.08517 * 19 16 15 22 22 H 1.09000 * 109.46850 * 59.99666 * 1 2 3 23 23 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46988 * 300.00026 * 1 2 3 25 25 H 1.09004 * 109.47535 * 173.95380 * 3 2 1 26 26 H 1.08996 * 109.47194 * 53.95702 * 3 2 1 27 27 H 0.96701 * 113.99881 * 299.99463 * 6 4 3 28 28 H 0.97000 * 119.99706 * 359.97438 * 10 9 7 29 29 H 1.09004 * 109.47324 * 186.04661 * 15 2 1 30 30 H 1.09004 * 109.46708 * 306.04257 * 15 2 1 31 31 H 0.96695 * 114.00157 * 60.00110 * 18 16 15 32 32 H 1.09003 * 115.54975 * 34.42299 * 19 16 15 33 33 H 1.09002 * 117.49446 * 359.97438 * 20 19 16 34 34 H 1.08994 * 117.49789 * 145.02242 * 20 19 16 35 35 H 1.08999 * 117.49592 * 214.97743 * 21 19 16 36 36 H 1.08995 * 117.50021 * 0.02562 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 1 0.5473 2.0845 -1.4265 6 8 2.2010 1.3286 -2.4076 7 6 2.1711 3.4646 -1.3180 8 1 2.7192 3.8326 -0.4632 9 6 1.9651 4.2821 -2.4090 10 7 1.2972 3.8341 -3.4496 11 14 2.6345 6.0260 -2.4088 12 1 2.2801 6.6923 -3.6878 13 1 2.0433 6.7832 -1.2764 14 1 4.1118 5.9891 -2.2621 15 6 1.9955 -0.7661 1.1375 16 6 1.6315 -2.2426 0.9703 17 1 0.5531 -2.3389 0.8433 18 8 2.2956 -2.7696 -0.1800 19 6 2.0700 -3.0199 2.2130 20 6 3.2246 -4.0113 2.0553 21 6 1.7942 -4.5247 2.2388 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.0798 1.3444 0.1082 26 1 1.5612 1.9273 0.8309 27 1 3.1653 1.2641 -2.3763 28 1 0.9500 2.9284 -3.4497 29 1 3.0798 -0.6612 1.1756 30 1 1.5611 -0.3873 2.0628 31 1 3.2601 -2.7167 -0.1360 32 1 1.9966 -2.4786 3.1563 33 1 3.6716 -4.1100 1.0660 34 1 3.9107 -4.1225 2.8949 35 1 1.5400 -4.9733 3.1991 36 1 1.3008 -4.9610 1.3704 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929805534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:11 Heat of formation + Delta-G solvation = -103.548321 kcal Electronic energy + Delta-G solvation = -16499.922523 eV Core-core repulsion = 13790.718551 eV Total energy + Delta-G solvation = -2709.203972 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.19972 -38.77523 -36.84839 -35.69952 -34.22387 -31.21940 -29.49844 -27.62879 -25.77363 -23.51467 -23.14150 -21.81521 -21.37024 -19.39599 -17.75999 -17.32266 -16.78959 -16.60916 -16.45030 -15.68893 -15.54494 -15.08720 -14.91329 -14.41536 -14.08763 -13.78358 -13.47675 -12.76781 -12.71101 -12.59009 -12.52205 -12.33864 -12.08075 -12.03450 -11.92536 -11.41203 -11.24231 -11.05353 -10.72306 -10.61838 -10.03264 -9.16156 -8.61353 -6.46475 1.53384 1.61367 1.80896 2.55655 2.77643 2.93718 3.18180 3.57235 3.71867 3.93665 3.97606 4.05266 4.14280 4.18165 4.30584 4.38328 4.40863 4.52043 4.65732 4.68166 4.79188 4.86022 4.92154 5.01472 5.07750 5.22302 5.27935 5.45420 5.81035 6.02518 6.16907 6.20630 6.56028 6.86651 7.26368 7.52565 8.76128 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.060052 B = 0.005097 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.151424 B = 5491.950070 C = 5549.185582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.536 5.536 3 C 0.056 3.944 4 C 0.219 3.781 5 H 0.017 0.983 6 O -0.581 6.581 7 C -0.663 4.663 8 H 0.051 0.949 9 C -0.018 4.018 10 N -0.921 5.921 11 Si 1.117 2.883 12 H -0.286 1.286 13 H -0.270 1.270 14 H -0.267 1.267 15 C 0.029 3.971 16 C 0.147 3.853 17 H 0.090 0.910 18 O -0.563 6.563 19 C -0.196 4.196 20 C -0.171 4.171 21 C -0.171 4.171 22 H 0.043 0.957 23 H 0.081 0.919 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.023 0.977 27 H 0.359 0.641 28 H 0.266 0.734 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.380 0.620 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -12.718 13.355 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.260 5.260 3 C -0.072 4.072 4 C 0.162 3.838 5 H 0.034 0.966 6 O -0.386 6.386 7 C -0.701 4.701 8 H 0.069 0.931 9 C -0.219 4.219 10 N -0.557 5.557 11 Si 0.938 3.062 12 H -0.212 1.212 13 H -0.196 1.196 14 H -0.192 1.192 15 C -0.099 4.099 16 C 0.087 3.913 17 H 0.108 0.892 18 O -0.370 6.370 19 C -0.215 4.215 20 C -0.208 4.208 21 C -0.208 4.208 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.205 0.795 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.229 0.771 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.343 -11.766 11.676 16.740 hybrid contribution 0.411 -0.689 1.881 2.045 sum 2.754 -12.454 13.557 18.614 Atomic orbital electron populations 1.22357 0.87998 1.01885 0.99757 1.61849 1.07727 1.13402 1.42988 1.22558 0.99354 0.87654 0.97672 1.19360 0.92511 0.88648 0.83297 0.96555 1.86432 1.23986 1.77531 1.50646 1.22865 1.41277 1.00224 1.05708 0.93052 1.27339 0.94098 1.08674 0.91832 1.70776 1.33669 1.19997 1.31223 0.82962 0.76598 0.70262 0.76363 1.21151 1.19564 1.19248 1.22870 1.00827 0.94723 0.91518 1.21314 0.96832 0.89264 0.83847 0.89210 1.86590 1.24353 1.83943 1.42148 1.23042 1.05914 0.92728 0.99799 1.23045 0.91448 1.02383 1.03890 1.22955 0.99402 0.95000 1.03402 0.93829 0.90078 0.95492 0.91224 0.95870 0.79521 0.92315 0.90180 0.93805 0.77060 0.86497 0.88183 0.87449 0.87545 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 9.13 127.69 1.17 2.15 16 2 N -0.54 -19.43 4.58 -922.46 -4.22 -23.65 16 3 C 0.06 2.33 4.56 86.30 0.39 2.72 16 4 C 0.22 11.47 2.30 29.85 0.07 11.54 16 5 H 0.02 0.97 6.42 -2.39 -0.02 0.95 16 6 O -0.58 -31.06 11.88 -148.98 -1.77 -32.83 16 7 C -0.66 -37.39 8.76 25.60 0.22 -37.17 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.77 16 9 C -0.02 -1.02 5.40 84.66 0.46 -0.56 16 10 N -0.92 -58.15 13.53 21.45 0.29 -57.86 16 11 Si 1.12 49.98 29.90 68.60 2.05 52.03 16 12 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 13 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 14 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 15 C 0.03 0.78 4.58 86.30 0.39 1.18 16 16 C 0.15 3.53 3.29 30.59 0.10 3.64 16 17 H 0.09 2.33 6.26 -2.38 -0.01 2.31 16 18 O -0.56 -15.27 12.44 -148.98 -1.85 -17.13 16 19 C -0.20 -3.55 5.70 -10.79 -0.06 -3.61 16 20 C -0.17 -2.66 9.74 30.62 0.30 -2.36 16 21 C -0.17 -2.83 10.19 30.62 0.31 -2.52 16 22 H 0.04 1.79 6.47 -2.39 -0.02 1.77 16 23 H 0.08 2.47 6.21 -2.39 -0.01 2.45 16 24 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 2.79 7.93 -2.39 -0.02 2.78 16 26 H 0.02 0.97 8.12 -2.39 -0.02 0.95 16 27 H 0.36 17.30 9.04 -74.06 -0.67 16.63 16 28 H 0.27 17.49 6.47 -92.71 -0.60 16.89 16 29 H 0.08 2.07 7.93 -2.38 -0.02 2.05 16 30 H 0.04 1.12 8.12 -2.39 -0.02 1.10 16 31 H 0.38 8.13 7.56 -74.06 -0.56 7.57 16 32 H 0.12 1.90 8.11 -2.39 -0.02 1.88 16 33 H 0.10 1.58 6.37 -2.39 -0.02 1.56 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -68.43 292.64 -2.13 -70.56 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.02 Total: 33.86 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 3.35 Total: -24.99 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -3.93 Total: -81.51 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -3.62 Total: -49.96 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -68.43 -2.13 -70.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929805534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.988 kcal (2) G-P(sol) polarization free energy of solvation -68.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds