Wall clock time and date at job start Sun Mar 29 2020 21:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00089 * 2 1 4 4 C 1.53004 * 109.46770 * 293.95362 * 3 2 1 5 5 H 1.08999 * 109.47451 * 60.00227 * 4 3 2 6 6 O 1.42901 * 109.47281 * 299.99965 * 4 3 2 7 7 C 1.50706 * 109.46934 * 180.02562 * 4 3 2 8 8 H 1.08000 * 120.00078 * 359.97438 * 7 4 3 9 9 C 1.37879 * 120.00123 * 179.72225 * 7 4 3 10 10 N 1.31503 * 120.00317 * 180.27395 * 9 7 4 11 11 Si 1.86800 * 119.99782 * 0.28000 * 9 7 4 12 12 H 1.48501 * 109.47650 * 89.99514 * 11 9 7 13 13 H 1.48497 * 109.47390 * 209.99981 * 11 9 7 14 14 H 1.48511 * 109.47137 * 329.99519 * 11 9 7 15 15 C 1.46902 * 111.00046 * 123.95235 * 2 1 3 16 16 C 1.52995 * 109.46988 * 160.31887 * 15 2 1 17 17 H 1.09001 * 109.47088 * 57.04878 * 16 15 2 18 18 O 1.42896 * 109.47213 * 297.04496 * 16 15 2 19 19 C 1.53007 * 109.47005 * 177.04458 * 16 15 2 20 20 C 1.52995 * 117.49709 * 248.75055 * 19 16 15 21 21 C 1.52993 * 117.49911 * 180.08944 * 19 16 15 22 22 H 1.09003 * 109.47056 * 65.66152 * 1 2 3 23 23 H 1.08994 * 109.47283 * 185.66224 * 1 2 3 24 24 H 1.09001 * 109.47349 * 305.66285 * 1 2 3 25 25 H 1.08999 * 109.47387 * 173.95587 * 3 2 1 26 26 H 1.09001 * 109.47313 * 53.94935 * 3 2 1 27 27 H 0.96703 * 114.00176 * 300.00106 * 6 4 3 28 28 H 0.96997 * 120.00514 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.47150 * 280.32160 * 15 2 1 30 30 H 1.09004 * 109.46569 * 40.31642 * 15 2 1 31 31 H 0.96706 * 114.00109 * 299.99554 * 18 16 15 32 32 H 1.09000 * 115.54940 * 34.41710 * 19 16 15 33 33 H 1.08997 * 117.50357 * 359.97438 * 20 19 16 34 34 H 1.09002 * 117.49703 * 145.02416 * 20 19 16 35 35 H 1.08999 * 117.49648 * 214.98096 * 21 19 16 36 36 H 1.09005 * 117.49963 * 359.97245 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0573 -1.3183 5 1 0.5472 2.0844 -1.4266 6 8 2.2009 1.3285 -2.4077 7 6 2.1721 3.4641 -1.3186 8 1 2.7201 3.8322 -0.4639 9 6 1.9716 4.2795 -2.4122 10 7 2.4480 5.5052 -2.4147 11 14 1.0231 3.6431 -3.8903 12 1 -0.4216 3.9394 -3.7165 13 1 1.5202 4.3083 -5.1214 14 1 1.2167 2.1754 -4.0083 15 6 1.9955 -0.7660 1.1376 16 6 3.4462 -1.1630 0.8574 17 1 4.0368 -0.2677 0.6628 18 8 3.4931 -2.0221 -0.2835 19 6 4.0179 -1.8968 2.0723 20 6 5.1057 -1.1857 2.8796 21 6 5.4681 -2.3771 1.9895 22 1 -0.3633 0.4235 -0.9364 23 1 -0.3633 -1.0226 0.1014 24 1 -0.3634 0.5991 0.8349 25 1 3.0797 1.3444 0.1082 26 1 1.5611 1.9274 0.8309 27 1 3.1652 1.2640 -2.3764 28 1 2.3073 6.0787 -3.1842 29 1 1.9538 -0.1536 2.0384 30 1 1.3941 -1.6638 1.2805 31 1 2.9882 -2.8404 -0.1807 32 1 3.3115 -2.5207 2.6199 33 1 5.4145 -0.1954 2.5451 34 1 5.1153 -1.3422 3.9583 35 1 5.7158 -3.3169 2.4829 36 1 6.0148 -2.1708 1.0693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929805535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:13 Heat of formation + Delta-G solvation = -67.764578 kcal Electronic energy + Delta-G solvation = -16678.475191 eV Core-core repulsion = 13970.822919 eV Total energy + Delta-G solvation = -2707.652272 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.88157 -37.14170 -35.41680 -34.65176 -32.16568 -29.57572 -28.52437 -25.85398 -24.32795 -22.44390 -21.59419 -20.81959 -19.92471 -17.26790 -16.47552 -15.90964 -15.38990 -14.99817 -14.66915 -14.42028 -14.03471 -13.56048 -13.29464 -13.15482 -12.57601 -12.54660 -11.75357 -11.62217 -11.49538 -11.30287 -11.03382 -10.85185 -10.74392 -10.53235 -10.27367 -10.22973 -9.89497 -9.64468 -8.94213 -8.56620 -8.14317 -7.70992 -6.08430 -4.19257 3.43549 3.53172 3.62258 3.82608 4.16422 4.59598 4.62332 4.75074 4.82252 5.00692 5.15964 5.27220 5.28877 5.44914 5.54979 5.62942 5.73747 5.77506 5.84549 5.92659 6.00450 6.04392 6.07810 6.24309 6.30955 6.38294 6.67690 7.32013 7.42424 7.60085 7.74319 7.92744 8.34736 8.88379 9.21153 9.57391 11.02315 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.035488 B = 0.006614 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.811897 B = 4232.110923 C = 4468.526199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.524 5.524 3 C 0.040 3.960 4 C 0.202 3.798 5 H 0.051 0.949 6 O -0.568 6.568 7 C -0.566 4.566 8 H 0.070 0.930 9 C 0.084 3.916 10 N -0.895 5.895 11 Si 0.870 3.130 12 H -0.289 1.289 13 H -0.296 1.296 14 H -0.214 1.214 15 C 0.026 3.974 16 C 0.144 3.856 17 H 0.099 0.901 18 O -0.539 6.539 19 C -0.193 4.193 20 C -0.176 4.176 21 C -0.166 4.166 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.018 0.982 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.354 0.646 28 H 0.264 0.736 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.366 0.634 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.019 -15.391 9.062 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.248 5.248 3 C -0.088 4.088 4 C 0.144 3.856 5 H 0.069 0.931 6 O -0.373 6.373 7 C -0.603 4.603 8 H 0.088 0.912 9 C -0.120 4.120 10 N -0.533 5.533 11 Si 0.697 3.303 12 H -0.216 1.216 13 H -0.223 1.223 14 H -0.136 1.136 15 C -0.103 4.103 16 C 0.084 3.916 17 H 0.116 0.884 18 O -0.343 6.343 19 C -0.212 4.212 20 C -0.213 4.213 21 C -0.203 4.203 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.200 0.800 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.211 0.789 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.935 -15.038 8.132 17.121 hybrid contribution -0.590 0.108 0.706 0.926 sum 0.345 -14.929 8.838 17.353 Atomic orbital electron populations 1.22372 0.88085 1.00324 1.01259 1.61935 1.07014 1.15189 1.40653 1.22904 0.99520 0.86128 1.00208 1.19678 0.94425 0.89348 0.82132 0.93133 1.86652 1.23932 1.77851 1.48848 1.21542 1.38025 0.96366 1.04407 0.91224 1.24973 0.94211 0.94099 0.98764 1.69956 1.44948 1.07450 1.30919 0.87037 0.78922 0.83185 0.81182 1.21580 1.22305 1.13604 1.22783 0.96395 0.98289 0.92812 1.21432 0.94651 0.92301 0.83192 0.88364 1.86669 1.74647 1.34043 1.38898 1.23110 0.92532 1.04569 1.01032 1.22966 1.02924 0.97614 0.97774 1.22841 0.97233 0.98177 1.02047 0.90804 0.92523 0.96331 0.91442 0.95222 0.79981 0.92647 0.94448 0.91431 0.78870 0.88034 0.88448 0.88909 0.89079 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.23 60.07 0.55 1.00 16 2 N -0.52 -9.08 4.48 -242.91 -1.09 -10.16 16 3 C 0.04 0.80 4.39 -3.82 -0.02 0.79 16 4 C 0.20 4.84 2.18 -27.88 -0.06 4.78 16 5 H 0.05 1.25 6.11 -51.93 -0.32 0.93 16 6 O -0.57 -13.60 9.99 -35.23 -0.35 -13.95 16 7 C -0.57 -15.97 9.34 -34.44 -0.32 -16.29 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 10 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 11 Si 0.87 22.33 26.99 -169.99 -4.59 17.74 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 14 H -0.21 -5.42 5.30 56.52 0.30 -5.12 16 15 C 0.03 0.36 4.63 -3.83 -0.02 0.34 16 16 C 0.14 1.92 3.24 -26.73 -0.09 1.83 16 17 H 0.10 1.52 6.47 -51.93 -0.34 1.18 16 18 O -0.54 -7.70 13.16 -35.23 -0.46 -8.16 16 19 C -0.19 -2.06 5.36 -90.62 -0.49 -2.54 16 20 C -0.18 -1.78 10.18 -26.70 -0.27 -2.05 16 21 C -0.17 -1.66 10.16 -26.70 -0.27 -1.94 16 22 H 0.07 1.30 6.75 -51.93 -0.35 0.95 16 23 H 0.06 0.76 7.84 -51.93 -0.41 0.35 16 24 H 0.02 0.28 8.07 -51.93 -0.42 -0.14 16 25 H 0.07 1.36 6.59 -51.93 -0.34 1.01 16 26 H 0.03 0.60 8.07 -51.93 -0.42 0.19 16 27 H 0.35 7.84 9.04 45.56 0.41 8.25 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.04 0.52 8.00 -51.93 -0.42 0.10 16 30 H 0.07 0.80 7.74 -51.93 -0.40 0.40 16 31 H 0.37 3.89 9.05 45.56 0.41 4.31 16 32 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 33 H 0.10 1.05 8.05 -51.93 -0.42 0.63 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 292.87 15.07 4.41 4.41 Total: -1.00 -32.24 292.87 -6.73 -38.97 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -4.35 Total: 9.84 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.08 Total: -11.73 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.31 Total: -37.12 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.82 Total: -22.12 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.59 Total: 17.74 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.24 -6.73 -38.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929805535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.797 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds