Wall clock time and date at job start Sun Mar 29 2020 21:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00089 * 2 1 4 4 C 1.53004 * 109.46770 * 293.95362 * 3 2 1 5 5 H 1.08999 * 109.47451 * 60.00227 * 4 3 2 6 6 O 1.42901 * 109.47281 * 299.99965 * 4 3 2 7 7 C 1.50706 * 109.46934 * 180.02562 * 4 3 2 8 8 H 1.08000 * 120.00078 * 359.97438 * 7 4 3 9 9 C 1.37879 * 120.00123 * 179.72225 * 7 4 3 10 10 N 1.31503 * 120.00317 * 180.27395 * 9 7 4 11 11 Si 1.86800 * 119.99782 * 0.28000 * 9 7 4 12 12 H 1.48501 * 109.47650 * 89.99514 * 11 9 7 13 13 H 1.48497 * 109.47390 * 209.99981 * 11 9 7 14 14 H 1.48511 * 109.47137 * 329.99519 * 11 9 7 15 15 C 1.46902 * 111.00046 * 123.95235 * 2 1 3 16 16 C 1.52995 * 109.46988 * 160.31887 * 15 2 1 17 17 H 1.09001 * 109.47088 * 57.04878 * 16 15 2 18 18 O 1.42896 * 109.47213 * 297.04496 * 16 15 2 19 19 C 1.53007 * 109.47005 * 177.04458 * 16 15 2 20 20 C 1.52995 * 117.49709 * 248.75055 * 19 16 15 21 21 C 1.52993 * 117.49911 * 180.08944 * 19 16 15 22 22 H 1.09003 * 109.47056 * 65.66152 * 1 2 3 23 23 H 1.08994 * 109.47283 * 185.66224 * 1 2 3 24 24 H 1.09001 * 109.47349 * 305.66285 * 1 2 3 25 25 H 1.08999 * 109.47387 * 173.95587 * 3 2 1 26 26 H 1.09001 * 109.47313 * 53.94935 * 3 2 1 27 27 H 0.96703 * 114.00176 * 300.00106 * 6 4 3 28 28 H 0.96997 * 120.00514 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.47150 * 280.32160 * 15 2 1 30 30 H 1.09004 * 109.46569 * 40.31642 * 15 2 1 31 31 H 0.96706 * 114.00109 * 299.99554 * 18 16 15 32 32 H 1.09000 * 115.54940 * 34.41710 * 19 16 15 33 33 H 1.08997 * 117.50357 * 359.97438 * 20 19 16 34 34 H 1.09002 * 117.49703 * 145.02416 * 20 19 16 35 35 H 1.08999 * 117.49648 * 214.98096 * 21 19 16 36 36 H 1.09005 * 117.49963 * 359.97245 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0573 -1.3183 5 1 0.5472 2.0844 -1.4266 6 8 2.2009 1.3285 -2.4077 7 6 2.1721 3.4641 -1.3186 8 1 2.7201 3.8322 -0.4639 9 6 1.9716 4.2795 -2.4122 10 7 2.4480 5.5052 -2.4147 11 14 1.0231 3.6431 -3.8903 12 1 -0.4216 3.9394 -3.7165 13 1 1.5202 4.3083 -5.1214 14 1 1.2167 2.1754 -4.0083 15 6 1.9955 -0.7660 1.1376 16 6 3.4462 -1.1630 0.8574 17 1 4.0368 -0.2677 0.6628 18 8 3.4931 -2.0221 -0.2835 19 6 4.0179 -1.8968 2.0723 20 6 5.1057 -1.1857 2.8796 21 6 5.4681 -2.3771 1.9895 22 1 -0.3633 0.4235 -0.9364 23 1 -0.3633 -1.0226 0.1014 24 1 -0.3634 0.5991 0.8349 25 1 3.0797 1.3444 0.1082 26 1 1.5611 1.9274 0.8309 27 1 3.1652 1.2640 -2.3764 28 1 2.3073 6.0787 -3.1842 29 1 1.9538 -0.1536 2.0384 30 1 1.3941 -1.6638 1.2805 31 1 2.9882 -2.8404 -0.1807 32 1 3.3115 -2.5207 2.6199 33 1 5.4145 -0.1954 2.5451 34 1 5.1153 -1.3422 3.9583 35 1 5.7158 -3.3169 2.4829 36 1 6.0148 -2.1708 1.0693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929805535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:13 Heat of formation + Delta-G solvation = -94.642206 kcal Electronic energy + Delta-G solvation = -16679.640693 eV Core-core repulsion = 13970.822919 eV Total energy + Delta-G solvation = -2708.817774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.99368 -38.56973 -36.76023 -35.95764 -34.40203 -31.05429 -30.01511 -27.57918 -25.68863 -23.28088 -23.08011 -21.77934 -21.53967 -19.34159 -17.49318 -17.06664 -16.86437 -16.59206 -16.47083 -15.86849 -15.32265 -14.99551 -14.93658 -14.44894 -14.36950 -13.63711 -13.53855 -12.95515 -12.88706 -12.63996 -12.47484 -12.41199 -12.31725 -11.83012 -11.72162 -11.38839 -11.11077 -11.03145 -10.80925 -10.67843 -10.08435 -9.08624 -8.36172 -6.50645 1.38956 1.44732 1.76653 2.44585 2.76892 3.00035 3.03390 3.64771 3.76581 3.98839 4.07603 4.10924 4.17621 4.23954 4.36750 4.42952 4.49363 4.62423 4.68273 4.79410 4.83745 4.92876 4.99133 5.05227 5.06325 5.25670 5.32705 5.44900 5.50031 6.07423 6.13807 6.26977 6.61624 7.04849 7.22033 7.37201 8.78161 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.035488 B = 0.006614 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.811897 B = 4232.110923 C = 4468.526199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.535 5.535 3 C 0.055 3.945 4 C 0.209 3.791 5 H 0.049 0.951 6 O -0.570 6.570 7 C -0.568 4.568 8 H 0.035 0.965 9 C 0.030 3.970 10 N -0.940 5.940 11 Si 0.938 3.062 12 H -0.283 1.283 13 H -0.296 1.296 14 H -0.207 1.207 15 C 0.029 3.971 16 C 0.147 3.853 17 H 0.068 0.932 18 O -0.560 6.560 19 C -0.190 4.190 20 C -0.180 4.180 21 C -0.163 4.163 22 H 0.053 0.947 23 H 0.088 0.912 24 H 0.023 0.977 25 H 0.061 0.939 26 H 0.023 0.977 27 H 0.362 0.638 28 H 0.267 0.733 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.382 0.618 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.138 -17.865 9.532 20.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.258 5.258 3 C -0.074 4.074 4 C 0.151 3.849 5 H 0.066 0.934 6 O -0.376 6.376 7 C -0.606 4.606 8 H 0.053 0.947 9 C -0.170 4.170 10 N -0.579 5.579 11 Si 0.763 3.237 12 H -0.210 1.210 13 H -0.223 1.223 14 H -0.129 1.129 15 C -0.099 4.099 16 C 0.088 3.912 17 H 0.086 0.914 18 O -0.366 6.366 19 C -0.209 4.209 20 C -0.217 4.217 21 C -0.200 4.200 22 H 0.072 0.928 23 H 0.106 0.894 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.209 0.791 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.230 0.770 32 H 0.142 0.858 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.052 -17.537 8.620 19.541 hybrid contribution -0.266 0.866 0.616 1.095 sum -0.214 -16.671 9.235 19.059 Atomic orbital electron populations 1.22418 0.87109 1.02267 1.00388 1.61853 1.08010 1.13140 1.42841 1.22526 0.99276 0.87909 0.97658 1.19492 0.93874 0.87401 0.84142 0.93377 1.86589 1.24698 1.77416 1.48885 1.21877 1.37072 0.98652 1.03037 0.94698 1.25834 0.95227 0.94185 1.01750 1.70075 1.46907 1.08902 1.32052 0.85986 0.77577 0.82667 0.77511 1.20993 1.22313 1.12892 1.22862 0.96878 0.98751 0.91427 1.21286 0.94129 0.91692 0.84126 0.91403 1.86626 1.75266 1.35058 1.39613 1.23019 0.93089 1.04715 1.00065 1.23034 1.02741 0.97075 0.98828 1.22875 0.96585 0.98972 1.01538 0.92805 0.89386 0.95864 0.92027 0.95912 0.79102 0.92423 0.94230 0.88500 0.77005 0.85837 0.89903 0.87081 0.87014 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.23 127.69 1.18 1.95 16 2 N -0.53 -17.53 4.48 -922.45 -4.13 -21.66 16 3 C 0.05 2.18 4.39 86.31 0.38 2.56 16 4 C 0.21 9.95 2.18 29.85 0.07 10.02 16 5 H 0.05 2.34 6.11 -2.39 -0.01 2.33 16 6 O -0.57 -26.67 9.99 -148.98 -1.49 -28.15 16 7 C -0.57 -32.70 9.34 25.60 0.24 -32.46 16 8 H 0.03 2.20 7.99 -2.91 -0.02 2.17 16 9 C 0.03 1.75 5.47 84.66 0.46 2.22 16 10 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 11 Si 0.94 46.39 26.99 68.60 1.85 48.25 16 12 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 13 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 14 H -0.21 -9.92 5.30 99.48 0.53 -9.40 16 15 C 0.03 0.72 4.63 86.30 0.40 1.12 16 16 C 0.15 3.70 3.24 30.59 0.10 3.80 16 17 H 0.07 2.11 6.47 -2.39 -0.02 2.09 16 18 O -0.56 -14.97 13.16 -148.98 -1.96 -16.93 16 19 C -0.19 -3.58 5.36 -10.80 -0.06 -3.63 16 20 C -0.18 -3.35 10.18 30.62 0.31 -3.04 16 21 C -0.16 -2.94 10.16 30.62 0.31 -2.63 16 22 H 0.05 1.79 6.75 -2.39 -0.02 1.77 16 23 H 0.09 2.02 7.84 -2.39 -0.02 2.00 16 24 H 0.02 0.65 8.07 -2.39 -0.02 0.63 16 25 H 0.06 2.51 6.59 -2.39 -0.02 2.50 16 26 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 27 H 0.36 15.79 9.04 -74.06 -0.67 15.13 16 28 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 29 H 0.04 1.00 8.00 -2.39 -0.02 0.98 16 30 H 0.10 1.89 7.74 -2.39 -0.02 1.87 16 31 H 0.38 7.10 9.05 -74.05 -0.67 6.43 16 32 H 0.12 1.83 8.11 -2.39 -0.02 1.81 16 33 H 0.08 1.78 8.05 -2.39 -0.02 1.76 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.11 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -69.04 292.87 -2.49 -71.53 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.45 Total: 26.16 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 3.39 Total: -20.10 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -3.83 Total: -80.74 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -3.45 Total: -45.09 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.85 Total: 48.25 kcal Total: -69.04 -2.49 -71.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929805535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.116 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds