Wall clock time and date at job start Sun Mar 29 2020 21:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00100 * 2 1 4 4 C 1.53001 * 109.47062 * 180.02562 * 3 2 1 5 5 N 1.46905 * 115.56091 * 30.43961 * 4 3 2 6 6 C 1.46896 * 110.99664 * 91.59874 * 5 4 3 7 7 C 1.46893 * 111.00040 * 215.55025 * 5 4 3 8 8 C 1.53000 * 109.47134 * 167.42985 * 7 5 4 9 9 H 1.08992 * 109.46999 * 59.99885 * 8 7 5 10 10 O 1.42903 * 109.47035 * 299.99740 * 8 7 5 11 11 C 1.50707 * 109.47083 * 180.02562 * 8 7 5 12 12 H 1.07999 * 119.99891 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99910 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00121 * 179.97438 * 13 11 8 15 15 Si 1.86802 * 120.00070 * 359.97438 * 13 11 8 16 16 H 1.48495 * 109.47253 * 89.99832 * 15 13 11 17 17 H 1.48495 * 109.47171 * 210.00452 * 15 13 11 18 18 H 1.48502 * 109.47032 * 330.00129 * 15 13 11 19 19 C 1.53000 * 117.49879 * 176.13027 * 4 3 2 20 20 C 1.52997 * 60.03010 * 107.50102 * 19 4 3 21 21 H 1.09002 * 109.47554 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47017 * 300.00246 * 1 2 3 23 23 H 1.09000 * 109.47312 * 59.99631 * 1 2 3 24 24 H 1.09005 * 109.46821 * 60.00379 * 3 2 1 25 25 H 1.08997 * 109.47175 * 300.00087 * 3 2 1 26 26 H 1.09001 * 109.47216 * 60.00066 * 6 5 4 27 27 H 1.09004 * 109.47315 * 179.97438 * 6 5 4 28 28 H 1.08999 * 109.47362 * 300.00163 * 6 5 4 29 29 H 1.08994 * 109.47527 * 287.43381 * 7 5 4 30 30 H 1.09006 * 109.47160 * 47.43186 * 7 5 4 31 31 H 0.96700 * 114.00182 * 300.00454 * 10 8 7 32 32 H 0.97000 * 120.00385 * 180.02562 * 14 13 11 33 33 H 1.09003 * 117.49664 * 0.02562 * 19 4 3 34 34 H 1.08999 * 117.49705 * 214.99862 * 19 4 3 35 35 H 1.09005 * 117.50029 * 107.48211 * 20 19 4 36 36 H 1.09002 * 117.49920 * 252.47132 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.0768 -0.0044 -0.6725 6 6 4.3607 0.2737 -2.0867 7 6 5.2755 -0.4990 0.0176 8 6 5.6267 -1.8931 -0.5060 9 1 5.8199 -1.8406 -1.5774 10 8 4.5353 -2.7826 -0.2618 11 6 6.8561 -2.4008 0.2025 12 1 7.3388 -1.7901 0.9511 13 6 7.3651 -3.6446 -0.1057 14 7 8.4382 -4.0875 0.5122 15 14 6.5305 -4.7006 -1.4010 16 1 7.1162 -4.4051 -2.7332 17 1 6.7354 -6.1352 -1.0773 18 1 5.0762 -4.4008 -1.4222 19 6 4.3466 2.4786 -0.0923 20 6 4.2866 1.7061 1.2269 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.6886 1.8463 0.8901 25 1 1.6886 1.8464 -0.8899 26 1 5.0915 1.0791 -2.1591 27 1 4.7608 -0.6230 -2.5601 28 1 3.4410 0.5713 -2.5902 29 1 6.1080 0.1794 -0.1685 30 1 5.0822 -0.5515 1.0891 31 1 4.3072 -2.8780 0.6731 32 1 8.7966 -4.9623 0.2951 33 1 3.7936 3.4161 -0.1518 34 1 5.2818 2.4478 -0.6515 35 1 5.1822 1.1668 1.5355 36 1 3.6946 2.1355 2.0351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930120259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:06 Heat of formation + Delta-G solvation = -47.796370 kcal Electronic energy + Delta-G solvation = -16976.379692 eV Core-core repulsion = 14269.593306 eV Total energy + Delta-G solvation = -2706.786386 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.37630 -37.13900 -35.82118 -33.05349 -32.14511 -28.87937 -27.94733 -26.11295 -25.40341 -23.66367 -22.23670 -20.31767 -18.84763 -17.13940 -16.59631 -15.82257 -15.58705 -14.99297 -14.74390 -14.35788 -14.05021 -13.59674 -13.36301 -13.05887 -12.63563 -12.49999 -12.13668 -11.63603 -11.31944 -11.29942 -10.88551 -10.83512 -10.77945 -10.59242 -10.30422 -9.89143 -9.74341 -9.31621 -8.90718 -8.54679 -8.12703 -7.61827 -6.06851 -4.17440 3.45000 3.54471 3.62663 3.84623 4.05286 4.26803 4.61363 4.90357 4.93333 5.07374 5.29085 5.30303 5.37463 5.45308 5.61786 5.65250 5.73517 5.75642 5.82302 5.86577 5.95531 6.05720 6.18820 6.20330 6.34015 6.44233 6.70813 7.30821 7.40072 7.50810 7.72543 7.79248 8.36685 8.90171 9.24731 9.59181 11.03844 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.007859 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.376969 B = 3562.164551 C = 3983.633719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.115 3.885 4 C 0.050 3.950 5 N -0.479 5.479 6 C 0.030 3.970 7 C 0.038 3.962 8 C 0.203 3.797 9 H 0.050 0.950 10 O -0.567 6.567 11 C -0.564 4.564 12 H 0.070 0.930 13 C 0.083 3.917 14 N -0.896 5.896 15 Si 0.870 3.130 16 H -0.289 1.289 17 H -0.297 1.297 18 H -0.213 1.213 19 C -0.204 4.204 20 C -0.181 4.181 21 H 0.085 0.915 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.019 0.981 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.354 0.646 32 H 0.264 0.736 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.001 12.039 -1.468 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.037 3.963 4 C -0.042 4.042 5 N -0.201 5.201 6 C -0.118 4.118 7 C -0.089 4.089 8 C 0.145 3.855 9 H 0.068 0.932 10 O -0.372 6.372 11 C -0.602 4.602 12 H 0.088 0.912 13 C -0.121 4.121 14 N -0.533 5.533 15 Si 0.696 3.304 16 H -0.216 1.216 17 H -0.223 1.223 18 H -0.135 1.135 19 C -0.243 4.243 20 C -0.218 4.218 21 H 0.103 0.897 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.200 0.800 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.123 11.292 -2.094 17.438 hybrid contribution 0.400 0.490 0.001 0.633 sum -12.722 11.782 -2.094 17.466 Atomic orbital electron populations 1.22725 0.82470 1.02599 0.99000 1.88197 1.17822 1.26032 1.95008 1.21823 0.90161 0.85371 0.98952 1.21854 0.92040 0.89755 1.00526 1.61799 1.31311 1.25693 1.01301 1.22368 0.99497 1.00337 0.89600 1.23007 0.88568 0.98645 0.98713 1.19687 0.85377 0.84338 0.96087 0.93188 1.86655 1.54292 1.67072 1.29169 1.21533 1.11007 1.03313 1.24334 0.91215 1.24972 0.93822 0.97589 0.95681 1.69961 1.22084 1.19353 1.41914 0.87041 0.84378 0.78325 0.80630 1.21608 1.22347 1.13541 1.23428 1.02990 0.96275 1.01648 1.23539 1.03578 1.03163 0.91564 0.89688 0.94827 0.94768 0.93487 0.93701 0.96291 0.90825 0.92349 0.95296 0.90822 0.80020 0.92674 0.88889 0.88515 0.87332 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.35 -5.56 10.25 -35.23 -0.36 -5.92 16 3 C 0.11 1.54 6.18 37.16 0.23 1.77 16 4 C 0.05 0.75 2.25 -131.56 -0.30 0.46 16 5 N -0.48 -8.75 4.22 -227.13 -0.96 -9.71 16 6 C 0.03 0.50 9.18 60.06 0.55 1.05 16 7 C 0.04 0.78 3.17 -3.83 -0.01 0.76 16 8 C 0.20 4.91 2.25 -27.88 -0.06 4.85 16 9 H 0.05 1.25 5.99 -51.93 -0.31 0.94 16 10 O -0.57 -13.74 10.01 -35.23 -0.35 -14.09 16 11 C -0.56 -15.96 9.34 -34.44 -0.32 -16.28 16 12 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 13 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 14 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 15 Si 0.87 22.43 26.99 -169.99 -4.59 17.84 16 16 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 17 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 18 H -0.21 -5.44 5.31 56.52 0.30 -5.14 16 19 C -0.20 -2.63 9.33 -26.73 -0.25 -2.88 16 20 C -0.18 -2.51 9.02 -26.70 -0.24 -2.75 16 21 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.54 7.88 -51.93 -0.41 0.13 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.29 6.80 -51.93 -0.35 -0.06 16 27 H 0.07 1.34 6.41 -51.93 -0.33 1.01 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.59 7.98 -51.93 -0.41 0.18 16 30 H 0.07 1.52 6.52 -51.93 -0.34 1.18 16 31 H 0.35 7.87 9.04 45.56 0.41 8.28 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.32 7.15 -51.93 -0.37 0.95 16 35 H 0.11 1.67 5.85 -51.93 -0.30 1.37 16 36 H 0.10 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 288.94 15.07 4.35 4.35 Total: -1.00 -32.47 288.94 -5.55 -38.02 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.03 Total: 5.75 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 0.61 Total: -9.22 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.18 Total: -36.73 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.71 Total: -20.01 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.59 Total: 17.84 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.47 -5.55 -38.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930120259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.779 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds