Wall clock time and date at job start Sun Mar 29 2020 21:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00100 * 2 1 4 4 C 1.53001 * 109.47062 * 180.02562 * 3 2 1 5 5 N 1.46905 * 115.56091 * 30.43961 * 4 3 2 6 6 C 1.46896 * 110.99664 * 91.59874 * 5 4 3 7 7 C 1.46893 * 111.00040 * 215.55025 * 5 4 3 8 8 C 1.53000 * 109.47134 * 167.42985 * 7 5 4 9 9 H 1.08992 * 109.46999 * 59.99885 * 8 7 5 10 10 O 1.42903 * 109.47035 * 299.99740 * 8 7 5 11 11 C 1.50707 * 109.47083 * 180.02562 * 8 7 5 12 12 H 1.07999 * 119.99891 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99910 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00121 * 179.97438 * 13 11 8 15 15 Si 1.86802 * 120.00070 * 359.97438 * 13 11 8 16 16 H 1.48495 * 109.47253 * 89.99832 * 15 13 11 17 17 H 1.48495 * 109.47171 * 210.00452 * 15 13 11 18 18 H 1.48502 * 109.47032 * 330.00129 * 15 13 11 19 19 C 1.53000 * 117.49879 * 176.13027 * 4 3 2 20 20 C 1.52997 * 60.03010 * 107.50102 * 19 4 3 21 21 H 1.09002 * 109.47554 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47017 * 300.00246 * 1 2 3 23 23 H 1.09000 * 109.47312 * 59.99631 * 1 2 3 24 24 H 1.09005 * 109.46821 * 60.00379 * 3 2 1 25 25 H 1.08997 * 109.47175 * 300.00087 * 3 2 1 26 26 H 1.09001 * 109.47216 * 60.00066 * 6 5 4 27 27 H 1.09004 * 109.47315 * 179.97438 * 6 5 4 28 28 H 1.08999 * 109.47362 * 300.00163 * 6 5 4 29 29 H 1.08994 * 109.47527 * 287.43381 * 7 5 4 30 30 H 1.09006 * 109.47160 * 47.43186 * 7 5 4 31 31 H 0.96700 * 114.00182 * 300.00454 * 10 8 7 32 32 H 0.97000 * 120.00385 * 180.02562 * 14 13 11 33 33 H 1.09003 * 117.49664 * 0.02562 * 19 4 3 34 34 H 1.08999 * 117.49705 * 214.99862 * 19 4 3 35 35 H 1.09005 * 117.50029 * 107.48211 * 20 19 4 36 36 H 1.09002 * 117.49920 * 252.47132 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.0768 -0.0044 -0.6725 6 6 4.3607 0.2737 -2.0867 7 6 5.2755 -0.4990 0.0176 8 6 5.6267 -1.8931 -0.5060 9 1 5.8199 -1.8406 -1.5774 10 8 4.5353 -2.7826 -0.2618 11 6 6.8561 -2.4008 0.2025 12 1 7.3388 -1.7901 0.9511 13 6 7.3651 -3.6446 -0.1057 14 7 8.4382 -4.0875 0.5122 15 14 6.5305 -4.7006 -1.4010 16 1 7.1162 -4.4051 -2.7332 17 1 6.7354 -6.1352 -1.0773 18 1 5.0762 -4.4008 -1.4222 19 6 4.3466 2.4786 -0.0923 20 6 4.2866 1.7061 1.2269 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.6886 1.8463 0.8901 25 1 1.6886 1.8464 -0.8899 26 1 5.0915 1.0791 -2.1591 27 1 4.7608 -0.6230 -2.5601 28 1 3.4410 0.5713 -2.5902 29 1 6.1080 0.1794 -0.1685 30 1 5.0822 -0.5515 1.0891 31 1 4.3072 -2.8780 0.6731 32 1 8.7966 -4.9623 0.2951 33 1 3.7936 3.4161 -0.1518 34 1 5.2818 2.4478 -0.6515 35 1 5.1822 1.1668 1.5355 36 1 3.6946 2.1355 2.0351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930120259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:06 Heat of formation + Delta-G solvation = -73.473719 kcal Electronic energy + Delta-G solvation = -16977.493145 eV Core-core repulsion = 14269.593306 eV Total energy + Delta-G solvation = -2707.899839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60326 -38.35235 -37.49537 -34.51054 -34.34104 -30.61818 -29.02385 -27.78053 -26.36322 -25.33720 -23.33135 -22.08214 -20.23311 -19.10572 -17.82466 -16.90671 -16.81842 -16.68996 -16.27211 -15.95341 -15.70490 -15.06267 -14.82450 -14.61315 -14.28504 -13.60203 -13.41161 -13.28752 -12.94400 -12.73604 -12.54249 -12.39877 -12.24363 -11.92806 -11.70503 -11.57046 -11.03112 -10.93965 -10.79314 -10.29855 -10.08380 -9.01465 -8.35516 -6.49598 1.38989 1.44583 1.77226 2.45148 2.59719 2.92702 3.03335 3.09097 3.80471 3.91479 4.03088 4.11116 4.23867 4.41736 4.44814 4.53314 4.56835 4.61414 4.64288 4.74912 4.76607 4.85886 4.93932 4.95609 5.02233 5.05420 5.15794 5.45922 5.51507 6.08600 6.17565 6.26111 6.56399 6.62571 7.23711 7.39444 8.78700 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.007859 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.376969 B = 3562.164551 C = 3983.633719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.116 3.884 4 C 0.029 3.971 5 N -0.493 5.493 6 C 0.031 3.969 7 C 0.057 3.943 8 C 0.210 3.790 9 H 0.046 0.954 10 O -0.570 6.570 11 C -0.565 4.565 12 H 0.036 0.964 13 C 0.030 3.970 14 N -0.939 5.939 15 Si 0.937 3.063 16 H -0.285 1.285 17 H -0.296 1.296 18 H -0.207 1.207 19 C -0.184 4.184 20 C -0.186 4.186 21 H 0.084 0.916 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.029 0.971 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.363 0.637 32 H 0.267 0.733 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.095 13.332 -2.232 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C 0.039 3.961 4 C -0.062 4.062 5 N -0.215 5.215 6 C -0.117 4.117 7 C -0.071 4.071 8 C 0.151 3.849 9 H 0.064 0.936 10 O -0.376 6.376 11 C -0.603 4.603 12 H 0.054 0.946 13 C -0.170 4.170 14 N -0.579 5.579 15 Si 0.762 3.238 16 H -0.211 1.211 17 H -0.223 1.223 18 H -0.129 1.129 19 C -0.223 4.223 20 C -0.224 4.224 21 H 0.102 0.898 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.210 0.790 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.233 12.607 -2.855 19.978 hybrid contribution 1.047 0.155 0.299 1.100 sum -14.186 12.762 -2.556 19.253 Atomic orbital electron populations 1.22866 0.80544 1.03152 1.00511 1.88126 1.20117 1.27591 1.95354 1.21929 0.88561 0.84941 1.00714 1.22083 0.93355 0.89522 1.01197 1.61672 1.29591 1.28341 1.01917 1.22366 1.00642 0.99776 0.88909 1.22586 0.89683 0.96434 0.98354 1.19501 0.83755 0.86296 0.95310 0.93632 1.86593 1.53762 1.67232 1.30008 1.21844 1.12214 1.02839 1.23453 0.94581 1.25814 0.94368 0.99059 0.97716 1.70076 1.23828 1.20104 1.43867 0.85999 0.83415 0.76405 0.78018 1.21145 1.22252 1.12941 1.23464 1.02200 0.96516 1.00091 1.23566 1.02876 1.03399 0.92524 0.89750 0.93123 0.93348 0.91331 0.92137 0.95256 0.92770 0.90492 0.96044 0.91439 0.79047 0.92434 0.85756 0.89549 0.89707 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.39 -11.48 10.25 -148.98 -1.53 -13.01 16 3 C 0.12 2.74 6.18 71.98 0.44 3.18 16 4 C 0.03 0.82 2.25 3.55 0.01 0.83 16 5 N -0.49 -17.38 4.22 -872.49 -3.68 -21.06 16 6 C 0.03 0.99 9.18 127.69 1.17 2.16 16 7 C 0.06 2.35 3.17 86.30 0.27 2.62 16 8 C 0.21 10.13 2.25 29.85 0.07 10.20 16 9 H 0.05 2.27 5.99 -2.39 -0.01 2.26 16 10 O -0.57 -27.11 10.01 -148.98 -1.49 -28.61 16 11 C -0.57 -32.66 9.34 25.60 0.24 -32.42 16 12 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 13 C 0.03 1.78 5.47 84.65 0.46 2.25 16 14 N -0.94 -59.42 13.96 21.45 0.30 -59.12 16 15 Si 0.94 46.75 26.99 68.60 1.85 48.60 16 16 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 17 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 18 H -0.21 -10.07 5.31 99.48 0.53 -9.55 16 19 C -0.18 -4.20 9.33 30.59 0.29 -3.92 16 20 C -0.19 -4.81 9.02 30.62 0.28 -4.54 16 21 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.07 1.30 7.88 -2.38 -0.02 1.28 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.03 0.86 6.80 -2.39 -0.02 0.84 16 27 H 0.05 1.92 6.41 -2.38 -0.02 1.90 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.02 0.89 7.98 -2.39 -0.02 0.87 16 30 H 0.07 2.81 6.52 -2.38 -0.02 2.80 16 31 H 0.36 15.90 9.04 -74.06 -0.67 15.23 16 32 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 2.17 7.15 -2.39 -0.02 2.16 16 35 H 0.08 2.60 5.85 -2.38 -0.01 2.59 16 36 H 0.12 2.46 8.04 -2.39 -0.02 2.45 16 Total: -1.00 -69.56 288.94 0.15 -69.42 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.21 Total: 21.65 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 4.48 Total: -17.88 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.38 Total: -80.18 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -3.02 Total: -41.62 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.85 Total: 48.60 kcal Total: -69.56 0.15 -69.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930120259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.054 kcal (2) G-P(sol) polarization free energy of solvation -69.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds