Wall clock time and date at job start Sun Mar 29 2020 21:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00166 * 2 1 4 4 C 1.53001 * 109.47414 * 284.46586 * 3 2 1 5 5 H 1.08997 * 109.46925 * 59.99760 * 4 3 2 6 6 O 1.42902 * 109.47040 * 299.99466 * 4 3 2 7 7 C 1.50699 * 109.47148 * 179.97438 * 4 3 2 8 8 H 1.08005 * 119.99854 * 359.97438 * 7 4 3 9 9 C 1.37874 * 120.00003 * 179.97438 * 7 4 3 10 10 N 1.31519 * 119.99995 * 179.97438 * 9 7 4 11 11 Si 1.86803 * 120.00062 * 359.97438 * 9 7 4 12 12 H 1.48500 * 109.47101 * 90.00118 * 11 9 7 13 13 H 1.48502 * 109.46765 * 210.00037 * 11 9 7 14 14 H 1.48500 * 109.46842 * 329.99929 * 11 9 7 15 15 C 1.46900 * 111.00290 * 123.95949 * 2 1 3 16 16 C 1.52991 * 112.85366 * 167.29738 * 15 2 1 17 17 O 1.42895 * 109.47281 * 305.25093 * 16 15 2 18 18 C 1.53778 * 113.61149 * 35.98451 * 15 2 1 19 19 C 1.53778 * 87.08415 * 220.02507 * 18 15 2 20 20 C 1.53779 * 87.07914 * 25.43507 * 19 18 15 21 21 H 1.09002 * 109.46757 * 50.83612 * 1 2 3 22 22 H 1.08996 * 109.46950 * 290.83584 * 1 2 3 23 23 H 1.08997 * 109.47130 * 170.83167 * 1 2 3 24 24 H 1.09005 * 109.46878 * 44.46496 * 3 2 1 25 25 H 1.09001 * 109.47098 * 164.46087 * 3 2 1 26 26 H 0.96696 * 114.00052 * 300.00402 * 6 4 3 27 27 H 0.97003 * 120.00190 * 179.97438 * 10 9 7 28 28 H 1.09007 * 109.47301 * 65.25354 * 16 15 2 29 29 H 1.09008 * 109.47157 * 185.25256 * 16 15 2 30 30 H 0.96699 * 114.00674 * 179.97438 * 17 16 15 31 31 H 1.08998 * 113.62181 * 334.57667 * 18 15 2 32 32 H 1.09006 * 113.61553 * 105.47821 * 18 15 2 33 33 H 1.09002 * 113.61276 * 270.88881 * 19 18 15 34 34 H 1.09000 * 113.61917 * 139.98660 * 19 18 15 35 35 H 1.09003 * 113.61160 * 220.01843 * 20 19 18 36 36 H 1.09001 * 113.61340 * 89.11932 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8419 1.9767 -1.3967 5 1 0.7873 1.9923 -1.6720 6 8 2.5689 1.1875 -2.3405 7 6 2.3814 3.3838 -1.3965 8 1 2.7924 3.8044 -0.4906 9 6 2.3504 4.1342 -2.5528 10 7 2.8208 5.3624 -2.5524 11 14 1.6403 3.4064 -4.1198 12 1 0.1858 3.6985 -4.1864 13 1 2.3200 4.0059 -5.2962 14 1 1.8507 1.9364 -4.1224 15 6 1.9955 -0.7661 1.1375 16 6 3.4924 -1.0577 1.0156 17 8 3.7508 -1.7096 -0.2295 18 6 1.1519 -2.0022 1.4909 19 6 1.3951 -1.6487 2.9676 20 6 1.5886 -0.1947 2.5060 21 1 -0.3633 0.6490 -0.7968 22 1 -0.3633 0.3655 0.9604 23 1 -0.3633 -1.0145 -0.1637 24 1 1.4409 1.9734 0.7199 25 1 3.0500 1.3557 0.2753 26 1 3.5166 1.1293 -2.1573 27 1 2.7994 5.8902 -3.3660 28 1 4.0496 -0.1218 1.0582 29 1 3.8046 -1.7042 1.8358 30 1 4.6823 -1.9248 -0.3750 31 1 0.1080 -1.9196 1.1883 32 1 1.6085 -2.9441 1.1865 33 1 2.2972 -2.0992 3.3815 34 1 0.5198 -1.7930 3.6010 35 1 2.3979 0.3228 3.0212 36 1 0.6642 0.3822 2.4810 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930553651.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:08 Heat of formation + Delta-G solvation = -59.771355 kcal Electronic energy + Delta-G solvation = -17256.862442 eV Core-core repulsion = 14549.556782 eV Total energy + Delta-G solvation = -2707.305660 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.16942 -36.34376 -35.85741 -33.76437 -32.14543 -28.72089 -28.10772 -26.04355 -25.06390 -23.91147 -22.13406 -20.13870 -17.93367 -17.30308 -16.98683 -16.30961 -15.32516 -14.70985 -14.62451 -14.24416 -13.82794 -13.62948 -13.30337 -12.86978 -12.69939 -12.43195 -11.78827 -11.74407 -11.50042 -11.05772 -11.02223 -10.84372 -10.68352 -10.47692 -10.29096 -10.05449 -9.76817 -9.61488 -8.93050 -8.54783 -8.12284 -7.50887 -6.07249 -4.17735 3.45021 3.54356 3.84883 4.13283 4.43591 4.61346 4.64417 4.73656 4.86589 5.22154 5.28979 5.41309 5.50016 5.58862 5.66549 5.73257 5.80156 5.86499 5.93835 6.01818 6.07101 6.11844 6.22165 6.29242 6.45655 6.48486 6.72127 7.38260 7.52108 7.70117 7.81508 7.92961 8.36381 8.89928 9.25413 9.59168 11.03462 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.039324 B = 0.007633 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.864586 B = 3667.361082 C = 3751.485498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.506 5.506 3 C 0.044 3.956 4 C 0.204 3.796 5 H 0.049 0.951 6 O -0.565 6.565 7 C -0.564 4.564 8 H 0.069 0.931 9 C 0.083 3.917 10 N -0.897 5.897 11 Si 0.870 3.130 12 H -0.289 1.289 13 H -0.297 1.297 14 H -0.213 1.213 15 C 0.095 3.905 16 C 0.109 3.891 17 O -0.546 6.546 18 C -0.134 4.134 19 C -0.141 4.141 20 C -0.170 4.170 21 H 0.070 0.930 22 H 0.020 0.980 23 H 0.063 0.937 24 H 0.030 0.970 25 H 0.064 0.936 26 H 0.352 0.648 27 H 0.264 0.736 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.369 0.631 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -14.012 9.361 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.228 5.228 3 C -0.083 4.083 4 C 0.146 3.854 5 H 0.067 0.933 6 O -0.370 6.370 7 C -0.602 4.602 8 H 0.087 0.913 9 C -0.121 4.121 10 N -0.534 5.534 11 Si 0.697 3.303 12 H -0.216 1.216 13 H -0.224 1.224 14 H -0.135 1.135 15 C 0.005 3.995 16 C 0.031 3.969 17 O -0.350 6.350 18 C -0.171 4.171 19 C -0.179 4.179 20 C -0.209 4.209 21 H 0.089 0.911 22 H 0.038 0.962 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.197 0.803 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.214 0.786 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.903 -14.091 8.488 16.560 hybrid contribution 0.507 0.530 0.459 0.866 sum -1.396 -13.561 8.947 16.306 Atomic orbital electron populations 1.22485 0.88595 1.01539 0.99925 1.61836 1.06504 1.14596 1.39866 1.22784 0.99020 0.86188 1.00345 1.19654 0.92977 0.88747 0.84016 0.93299 1.86667 1.22579 1.74390 1.53339 1.21558 1.43038 0.97283 0.98348 0.91292 1.24979 0.93469 0.94098 0.99548 1.69968 1.45403 1.09279 1.28749 0.87036 0.78112 0.83689 0.81480 1.21610 1.22378 1.13542 1.22355 0.93841 0.94969 0.88379 1.21775 0.93648 0.95595 0.85899 1.86668 1.29964 1.80445 1.37878 1.23212 1.00874 0.98122 0.94902 1.22781 1.01559 0.96696 0.96816 1.23563 1.02305 0.96861 0.98180 0.91132 0.96206 0.91844 0.95163 0.91772 0.80299 0.92693 0.93521 0.93952 0.78552 0.89292 0.91087 0.90404 0.91571 0.91498 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.31 60.06 0.50 0.87 16 2 N -0.51 -9.11 4.44 -226.23 -1.00 -10.11 16 3 C 0.04 0.89 3.99 -3.83 -0.02 0.88 16 4 C 0.20 4.95 2.37 -27.88 -0.07 4.88 16 5 H 0.05 1.24 6.22 -51.93 -0.32 0.91 16 6 O -0.57 -13.67 10.00 -35.23 -0.35 -14.02 16 7 C -0.56 -15.99 9.34 -34.44 -0.32 -16.31 16 8 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 9 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 10 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 11 Si 0.87 22.50 26.99 -169.99 -4.59 17.91 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 13 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 14 H -0.21 -5.47 5.30 56.52 0.30 -5.17 16 15 C 0.10 1.41 0.80 -130.79 -0.10 1.30 16 16 C 0.11 1.49 6.11 37.15 0.23 1.72 16 17 O -0.55 -8.03 13.53 -35.23 -0.48 -8.50 16 18 C -0.13 -1.70 6.91 -25.92 -0.18 -1.88 16 19 C -0.14 -1.52 7.73 -25.92 -0.20 -1.72 16 20 C -0.17 -2.20 6.49 -25.92 -0.17 -2.37 16 21 H 0.07 1.25 6.63 -51.93 -0.34 0.91 16 22 H 0.02 0.29 6.24 -51.93 -0.32 -0.03 16 23 H 0.06 0.94 6.36 -51.93 -0.33 0.61 16 24 H 0.03 0.62 7.92 -51.93 -0.41 0.21 16 25 H 0.06 1.30 6.39 -51.93 -0.33 0.97 16 26 H 0.35 7.77 9.04 45.56 0.41 8.18 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.05 0.66 6.84 -51.93 -0.36 0.30 16 29 H 0.04 0.47 7.32 -51.92 -0.38 0.09 16 30 H 0.37 3.63 9.12 45.56 0.42 4.04 16 31 H 0.09 1.13 5.57 -51.93 -0.29 0.84 16 32 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.08 0.75 7.61 -51.93 -0.40 0.36 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.09 1.18 6.36 -51.93 -0.33 0.85 16 LS Contribution 278.20 15.07 4.19 4.19 Total: -1.00 -33.17 278.20 -5.79 -38.96 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -3.91 Total: 8.90 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.43 Total: -10.29 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.23 Total: -37.15 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.83 Total: -22.53 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.59 Total: 17.91 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.17 -5.79 -38.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930553651.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.810 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds