Wall clock time and date at job start Sun Mar 29 2020 21:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00166 * 2 1 4 4 C 1.53001 * 109.47414 * 284.46586 * 3 2 1 5 5 H 1.08997 * 109.46925 * 59.99760 * 4 3 2 6 6 O 1.42902 * 109.47040 * 299.99466 * 4 3 2 7 7 C 1.50699 * 109.47148 * 179.97438 * 4 3 2 8 8 H 1.08005 * 119.99854 * 359.97438 * 7 4 3 9 9 C 1.37874 * 120.00003 * 179.97438 * 7 4 3 10 10 N 1.31519 * 119.99995 * 179.97438 * 9 7 4 11 11 Si 1.86803 * 120.00062 * 359.97438 * 9 7 4 12 12 H 1.48500 * 109.47101 * 90.00118 * 11 9 7 13 13 H 1.48502 * 109.46765 * 210.00037 * 11 9 7 14 14 H 1.48500 * 109.46842 * 329.99929 * 11 9 7 15 15 C 1.46900 * 111.00290 * 123.95949 * 2 1 3 16 16 C 1.52991 * 112.85366 * 167.29738 * 15 2 1 17 17 O 1.42895 * 109.47281 * 305.25093 * 16 15 2 18 18 C 1.53778 * 113.61149 * 35.98451 * 15 2 1 19 19 C 1.53778 * 87.08415 * 220.02507 * 18 15 2 20 20 C 1.53779 * 87.07914 * 25.43507 * 19 18 15 21 21 H 1.09002 * 109.46757 * 50.83612 * 1 2 3 22 22 H 1.08996 * 109.46950 * 290.83584 * 1 2 3 23 23 H 1.08997 * 109.47130 * 170.83167 * 1 2 3 24 24 H 1.09005 * 109.46878 * 44.46496 * 3 2 1 25 25 H 1.09001 * 109.47098 * 164.46087 * 3 2 1 26 26 H 0.96696 * 114.00052 * 300.00402 * 6 4 3 27 27 H 0.97003 * 120.00190 * 179.97438 * 10 9 7 28 28 H 1.09007 * 109.47301 * 65.25354 * 16 15 2 29 29 H 1.09008 * 109.47157 * 185.25256 * 16 15 2 30 30 H 0.96699 * 114.00674 * 179.97438 * 17 16 15 31 31 H 1.08998 * 113.62181 * 334.57667 * 18 15 2 32 32 H 1.09006 * 113.61553 * 105.47821 * 18 15 2 33 33 H 1.09002 * 113.61276 * 270.88881 * 19 18 15 34 34 H 1.09000 * 113.61917 * 139.98660 * 19 18 15 35 35 H 1.09003 * 113.61160 * 220.01843 * 20 19 18 36 36 H 1.09001 * 113.61340 * 89.11932 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8419 1.9767 -1.3967 5 1 0.7873 1.9923 -1.6720 6 8 2.5689 1.1875 -2.3405 7 6 2.3814 3.3838 -1.3965 8 1 2.7924 3.8044 -0.4906 9 6 2.3504 4.1342 -2.5528 10 7 2.8208 5.3624 -2.5524 11 14 1.6403 3.4064 -4.1198 12 1 0.1858 3.6985 -4.1864 13 1 2.3200 4.0059 -5.2962 14 1 1.8507 1.9364 -4.1224 15 6 1.9955 -0.7661 1.1375 16 6 3.4924 -1.0577 1.0156 17 8 3.7508 -1.7096 -0.2295 18 6 1.1519 -2.0022 1.4909 19 6 1.3951 -1.6487 2.9676 20 6 1.5886 -0.1947 2.5060 21 1 -0.3633 0.6490 -0.7968 22 1 -0.3633 0.3655 0.9604 23 1 -0.3633 -1.0145 -0.1637 24 1 1.4409 1.9734 0.7199 25 1 3.0500 1.3557 0.2753 26 1 3.5166 1.1293 -2.1573 27 1 2.7994 5.8902 -3.3660 28 1 4.0496 -0.1218 1.0582 29 1 3.8046 -1.7042 1.8358 30 1 4.6823 -1.9248 -0.3750 31 1 0.1080 -1.9196 1.1883 32 1 1.6085 -2.9441 1.1865 33 1 2.2972 -2.0992 3.3815 34 1 0.5198 -1.7930 3.6010 35 1 2.3979 0.3228 3.0212 36 1 0.6642 0.3822 2.4810 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930553651.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:08 Heat of formation + Delta-G solvation = -88.267215 kcal Electronic energy + Delta-G solvation = -17258.098116 eV Core-core repulsion = 14549.556782 eV Total energy + Delta-G solvation = -2708.541333 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.28995 -38.12167 -36.94495 -35.22973 -34.38491 -30.54267 -29.26939 -27.49622 -26.33536 -25.29531 -23.38761 -21.91124 -19.49564 -18.79062 -18.18545 -17.57127 -16.83827 -16.41705 -16.38772 -15.59245 -15.47300 -15.02415 -14.72463 -14.48088 -14.07714 -13.63594 -13.55140 -13.01558 -12.92156 -12.81852 -12.57727 -12.26523 -12.20615 -11.96273 -11.59247 -11.42033 -11.10478 -11.02488 -10.80008 -10.68240 -10.06513 -8.89452 -8.35861 -6.49677 1.38625 1.44112 1.76946 2.44888 2.95050 3.03269 3.33442 3.63906 3.76275 3.91031 4.13033 4.19951 4.24111 4.40234 4.49036 4.53733 4.57713 4.66188 4.75353 4.78810 4.88281 4.98028 5.04998 5.05719 5.14727 5.22702 5.43283 5.49024 5.54082 6.08975 6.25685 6.37704 6.62675 7.07578 7.24331 7.40880 8.78345 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.039324 B = 0.007633 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.864586 B = 3667.361082 C = 3751.485498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.520 5.520 3 C 0.062 3.938 4 C 0.211 3.789 5 H 0.042 0.958 6 O -0.569 6.569 7 C -0.565 4.565 8 H 0.036 0.964 9 C 0.030 3.970 10 N -0.940 5.940 11 Si 0.937 3.063 12 H -0.286 1.286 13 H -0.295 1.295 14 H -0.208 1.208 15 C 0.077 3.923 16 C 0.109 3.891 17 O -0.570 6.570 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.171 4.171 21 H 0.050 0.950 22 H 0.033 0.967 23 H 0.081 0.919 24 H 0.022 0.978 25 H 0.061 0.939 26 H 0.361 0.639 27 H 0.267 0.733 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.388 0.612 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 -16.199 9.921 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.242 5.242 3 C -0.066 4.066 4 C 0.153 3.847 5 H 0.060 0.940 6 O -0.374 6.374 7 C -0.603 4.603 8 H 0.054 0.946 9 C -0.169 4.169 10 N -0.579 5.579 11 Si 0.762 3.238 12 H -0.213 1.213 13 H -0.222 1.222 14 H -0.130 1.130 15 C -0.013 4.013 16 C 0.030 3.970 17 O -0.377 6.377 18 C -0.168 4.168 19 C -0.160 4.160 20 C -0.210 4.210 21 H 0.069 0.931 22 H 0.051 0.949 23 H 0.099 0.901 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.208 0.792 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.236 0.764 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.302 -16.299 9.065 18.792 hybrid contribution 0.683 1.202 0.344 1.425 sum -1.619 -15.098 9.410 17.864 Atomic orbital electron populations 1.22504 0.87864 1.02266 0.99946 1.61748 1.07364 1.12800 1.42337 1.22362 0.98995 0.87813 0.97423 1.19459 0.92093 0.86827 0.86358 0.94034 1.86604 1.23410 1.73915 1.53470 1.21871 1.42146 0.99357 0.96961 0.94582 1.25809 0.93958 0.94361 1.02814 1.70081 1.47298 1.10755 1.29778 0.86002 0.77283 0.82917 0.77610 1.21294 1.22227 1.13005 1.22703 0.94897 0.95767 0.87928 1.21839 0.92852 0.95712 0.86566 1.86604 1.31993 1.80510 1.38568 1.23205 1.00366 0.97034 0.96226 1.22735 1.03029 0.94412 0.95808 1.23539 1.01876 0.98333 0.97280 0.93069 0.94891 0.90063 0.95982 0.92031 0.79235 0.92454 0.94692 0.90985 0.76396 0.89330 0.90961 0.88701 0.89998 0.91321 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 8.31 127.69 1.06 1.75 16 2 N -0.52 -18.04 4.44 -869.66 -3.86 -21.90 16 3 C 0.06 2.51 3.99 86.30 0.34 2.86 16 4 C 0.21 10.18 2.37 29.85 0.07 10.25 16 5 H 0.04 2.09 6.22 -2.39 -0.01 2.07 16 6 O -0.57 -26.85 10.00 -148.98 -1.49 -28.34 16 7 C -0.57 -32.55 9.34 25.60 0.24 -32.31 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 9 C 0.03 1.79 5.47 84.65 0.46 2.25 16 10 N -0.94 -59.29 13.96 21.45 0.30 -58.99 16 11 Si 0.94 46.82 26.99 68.60 1.85 48.67 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 13 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 14 H -0.21 -10.14 5.30 99.48 0.53 -9.61 16 15 C 0.08 2.11 0.80 4.05 0.00 2.12 16 16 C 0.11 2.73 6.11 71.98 0.44 3.17 16 17 O -0.57 -15.62 13.53 -148.98 -2.02 -17.64 16 18 C -0.13 -2.94 6.91 31.12 0.21 -2.73 16 19 C -0.12 -2.20 7.73 31.12 0.24 -1.96 16 20 C -0.17 -4.04 6.49 31.12 0.20 -3.84 16 21 H 0.05 1.78 6.63 -2.39 -0.02 1.76 16 22 H 0.03 0.93 6.24 -2.39 -0.01 0.92 16 23 H 0.08 2.23 6.36 -2.39 -0.02 2.22 16 24 H 0.02 0.91 7.92 -2.38 -0.02 0.90 16 25 H 0.06 2.50 6.39 -2.39 -0.02 2.48 16 26 H 0.36 15.61 9.04 -74.06 -0.67 14.94 16 27 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 28 H 0.03 0.94 6.84 -2.38 -0.02 0.93 16 29 H 0.07 1.37 7.32 -2.38 -0.02 1.35 16 30 H 0.39 6.88 9.12 -74.06 -0.68 6.20 16 31 H 0.09 1.99 5.57 -2.39 -0.01 1.97 16 32 H 0.07 1.62 8.10 -2.38 -0.02 1.60 16 33 H 0.09 1.42 7.61 -2.39 -0.02 1.40 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 36 H 0.08 1.98 6.36 -2.39 -0.02 1.96 16 Total: -1.00 -70.35 278.20 -2.37 -72.72 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.43 Total: 23.91 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 3.28 Total: -18.44 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -3.56 Total: -80.89 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -3.51 Total: -45.98 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.85 Total: 48.67 kcal Total: -70.35 -2.37 -72.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930553651.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.545 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds