Wall clock time and date at job start Sun Mar 29 2020 21:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99671 * 2 1 4 4 C 1.53001 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.72207 * 171.90641 * 4 3 2 6 6 C 1.54933 * 110.66756 * 48.81240 * 4 3 2 7 7 C 1.54592 * 102.92136 * 204.14939 * 6 4 3 8 8 C 1.53986 * 105.14261 * 21.95545 * 7 6 4 9 9 N 1.47903 * 107.05729 * 1.22442 * 8 7 6 10 10 C 1.46902 * 111.00104 * 214.15264 * 9 8 7 11 11 C 1.52996 * 109.47198 * 294.31470 * 10 9 8 12 12 H 1.09002 * 109.46945 * 56.35377 * 11 10 9 13 13 O 1.42896 * 109.47415 * 296.34809 * 11 10 9 14 14 C 1.50705 * 109.47064 * 176.34723 * 11 10 9 15 15 H 1.07998 * 119.99637 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00127 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00007 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99965 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46862 * 60.00219 * 18 16 14 20 20 H 1.48496 * 109.46961 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47394 * 300.00456 * 18 16 14 22 22 H 1.09003 * 109.47569 * 299.99503 * 1 2 3 23 23 H 1.08996 * 109.47521 * 59.99757 * 1 2 3 24 24 H 1.08999 * 109.46793 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46784 * 60.00068 * 3 2 1 26 26 H 1.08994 * 109.47496 * 300.00458 * 3 2 1 27 27 H 1.08998 * 110.72548 * 85.78689 * 6 4 3 28 28 H 1.09008 * 110.87714 * 322.57825 * 6 4 3 29 29 H 1.09001 * 110.30725 * 263.03484 * 7 6 4 30 30 H 1.09009 * 110.38948 * 140.91386 * 7 6 4 31 31 H 1.09000 * 109.92064 * 241.87150 * 8 7 6 32 32 H 1.09007 * 110.08419 * 120.66740 * 8 7 6 33 33 H 1.08997 * 109.46918 * 174.31348 * 10 9 8 34 34 H 1.08999 * 109.46759 * 54.31518 * 10 9 8 35 35 H 0.96696 * 114.00294 * 300.00000 * 13 11 10 36 36 H 0.96998 * 120.00108 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9996 2.1604 -0.1429 6 6 4.0056 0.1897 -1.0899 7 6 5.3812 -0.2776 -0.5615 8 6 5.3448 -0.0027 0.9532 9 7 4.0112 0.5581 1.2604 10 6 4.0929 1.5479 2.3428 11 6 4.5114 0.8523 3.6396 12 1 5.4545 0.3287 3.4830 13 8 3.5039 -0.0855 4.0237 14 6 4.6823 1.8801 4.7284 15 1 4.5101 2.9250 4.5164 16 6 5.0595 1.4866 5.9948 17 7 5.2707 0.2144 6.2525 18 14 5.2721 2.7607 7.3442 19 1 3.9874 3.4743 7.5580 20 1 5.6782 2.0855 8.6029 21 1 6.3189 3.7351 6.9446 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8464 0.8901 26 1 1.6885 1.8464 -0.8899 27 1 4.1121 0.6928 -2.0510 28 1 3.3173 -0.6517 -1.1708 29 1 6.1812 0.2950 -1.0309 30 1 5.5185 -1.3426 -0.7496 31 1 6.1200 0.7160 1.2189 32 1 5.4938 -0.9305 1.5057 33 1 3.1188 2.0172 2.4802 34 1 4.8296 2.3087 2.0845 35 1 2.6361 0.3115 4.1801 36 1 5.5357 -0.0625 7.1436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931257358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:06 Heat of formation + Delta-G solvation = -93.354017 kcal Electronic energy + Delta-G solvation = -16890.913470 eV Core-core repulsion = 14182.151557 eV Total energy + Delta-G solvation = -2708.761914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.01455 -37.01505 -35.35696 -32.05031 -31.47202 -30.35428 -27.52400 -26.41171 -24.75192 -24.09675 -21.38921 -19.96198 -19.46110 -16.99999 -16.27507 -15.59246 -15.48109 -15.00244 -14.57073 -14.26718 -13.79079 -13.68531 -13.38462 -12.75319 -12.45078 -12.17258 -11.78351 -11.52318 -11.29585 -10.97688 -10.86037 -10.84826 -10.73974 -10.50464 -10.32973 -10.16640 -9.99991 -9.37141 -8.92018 -8.52257 -8.00593 -7.61329 -5.95699 -4.14410 3.30539 3.35955 3.37368 4.04185 4.36284 4.52802 4.96621 5.06012 5.28818 5.31576 5.39137 5.47448 5.57315 5.60193 5.62545 5.73422 5.81145 5.98631 6.06535 6.14009 6.17949 6.22156 6.37573 6.54568 6.65317 6.65794 6.87205 7.39733 7.54422 7.73597 7.81608 7.93335 8.26128 8.89654 9.51905 9.69288 11.08344 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032341 B = 0.006988 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.565996 B = 4006.092573 C = 4398.785309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.081 3.919 4 C 0.058 3.942 5 H 0.057 0.943 6 C -0.112 4.112 7 C -0.130 4.130 8 C 0.041 3.959 9 N -0.490 5.490 10 C 0.022 3.978 11 C 0.239 3.761 12 H 0.054 0.946 13 O -0.553 6.553 14 C -0.576 4.576 15 H 0.053 0.947 16 C 0.080 3.920 17 N -0.858 5.858 18 Si 0.888 3.112 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 H 0.039 0.961 23 H 0.032 0.968 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.026 0.974 35 H 0.341 0.659 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 1.780 -13.516 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.004 3.996 4 C -0.051 4.051 5 H 0.075 0.925 6 C -0.150 4.150 7 C -0.168 4.168 8 C -0.087 4.087 9 N -0.214 5.214 10 C -0.106 4.106 11 C 0.181 3.819 12 H 0.071 0.929 13 O -0.354 6.354 14 C -0.614 4.614 15 H 0.071 0.929 16 C -0.126 4.126 17 N -0.494 5.494 18 Si 0.716 3.284 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.100 0.900 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.184 0.816 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.694 0.636 -13.253 14.074 hybrid contribution 0.099 2.207 0.690 2.314 sum -4.596 2.842 -12.562 13.675 Atomic orbital electron populations 1.22681 0.82232 1.02325 0.99280 1.87998 1.18326 1.27162 1.95113 1.22309 0.93172 0.84937 0.99177 1.22830 0.93442 0.96685 0.92169 0.92535 1.22389 0.96834 0.99489 0.96313 1.22402 0.97061 1.01373 0.95999 1.22776 0.90643 1.00688 0.94557 1.64767 1.22226 1.31076 1.03379 1.23274 0.99753 0.93236 0.94371 1.19272 0.88287 0.87631 0.86718 0.92851 1.86569 1.20237 1.37645 1.90951 1.21646 1.50109 0.93753 0.95912 0.92907 1.25021 0.94088 0.94960 0.98542 1.70076 1.43699 1.14503 1.21077 0.86751 0.78595 0.81721 0.81361 1.20190 1.21168 1.20250 0.94274 0.94989 0.89987 0.93248 0.93904 0.92178 0.89664 0.92272 0.91374 0.94137 0.90186 0.92134 0.95619 0.81608 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -5.79 9.40 -35.23 -0.33 -6.13 16 3 C 0.08 1.18 5.85 37.16 0.22 1.40 16 4 C 0.06 0.90 2.74 -65.79 -0.18 0.72 16 5 H 0.06 0.85 8.02 -51.93 -0.42 0.43 16 6 C -0.11 -1.57 6.43 -24.87 -0.16 -1.73 16 7 C -0.13 -1.86 6.93 -25.38 -0.18 -2.04 16 8 C 0.04 0.75 5.53 -2.76 -0.02 0.74 16 9 N -0.49 -9.49 4.89 -222.64 -1.09 -10.58 16 10 C 0.02 0.47 4.26 -3.83 -0.02 0.45 16 11 C 0.24 6.26 2.80 -27.88 -0.08 6.18 16 12 H 0.05 1.54 7.24 -51.93 -0.38 1.16 16 13 O -0.55 -15.06 12.66 -35.23 -0.45 -15.51 16 14 C -0.58 -16.14 8.76 -34.44 -0.30 -16.44 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.08 2.28 5.40 -17.82 -0.10 2.19 16 17 N -0.86 -25.90 12.84 55.43 0.71 -25.19 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.75 7.24 -51.93 -0.38 0.38 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.28 7.01 -51.92 -0.36 0.91 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.04 0.75 7.64 -51.93 -0.40 0.35 16 32 H 0.08 1.59 8.11 -51.93 -0.42 1.17 16 33 H 0.06 1.27 7.22 -51.93 -0.38 0.89 16 34 H 0.03 0.55 7.94 -51.93 -0.41 0.13 16 35 H 0.34 8.42 9.04 45.56 0.41 8.83 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -31.73 292.88 -6.68 -38.41 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.23 Total: 5.20 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 0.31 Total: -7.03 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.38 Total: -35.77 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.78 Total: -21.64 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.73 -6.68 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931257358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.940 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds