Wall clock time and date at job start Sun Mar 29 2020 21:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99671 * 2 1 4 4 C 1.53001 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.72207 * 171.90641 * 4 3 2 6 6 C 1.54933 * 110.66756 * 48.81240 * 4 3 2 7 7 C 1.54592 * 102.92136 * 204.14939 * 6 4 3 8 8 C 1.53986 * 105.14261 * 21.95545 * 7 6 4 9 9 N 1.47903 * 107.05729 * 1.22442 * 8 7 6 10 10 C 1.46902 * 111.00104 * 214.15264 * 9 8 7 11 11 C 1.52996 * 109.47198 * 294.31470 * 10 9 8 12 12 H 1.09002 * 109.46945 * 56.35377 * 11 10 9 13 13 O 1.42896 * 109.47415 * 296.34809 * 11 10 9 14 14 C 1.50705 * 109.47064 * 176.34723 * 11 10 9 15 15 H 1.07998 * 119.99637 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00127 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00007 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99965 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46862 * 60.00219 * 18 16 14 20 20 H 1.48496 * 109.46961 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47394 * 300.00456 * 18 16 14 22 22 H 1.09003 * 109.47569 * 299.99503 * 1 2 3 23 23 H 1.08996 * 109.47521 * 59.99757 * 1 2 3 24 24 H 1.08999 * 109.46793 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46784 * 60.00068 * 3 2 1 26 26 H 1.08994 * 109.47496 * 300.00458 * 3 2 1 27 27 H 1.08998 * 110.72548 * 85.78689 * 6 4 3 28 28 H 1.09008 * 110.87714 * 322.57825 * 6 4 3 29 29 H 1.09001 * 110.30725 * 263.03484 * 7 6 4 30 30 H 1.09009 * 110.38948 * 140.91386 * 7 6 4 31 31 H 1.09000 * 109.92064 * 241.87150 * 8 7 6 32 32 H 1.09007 * 110.08419 * 120.66740 * 8 7 6 33 33 H 1.08997 * 109.46918 * 174.31348 * 10 9 8 34 34 H 1.08999 * 109.46759 * 54.31518 * 10 9 8 35 35 H 0.96696 * 114.00294 * 300.00000 * 13 11 10 36 36 H 0.96998 * 120.00108 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9996 2.1604 -0.1429 6 6 4.0056 0.1897 -1.0899 7 6 5.3812 -0.2776 -0.5615 8 6 5.3448 -0.0027 0.9532 9 7 4.0112 0.5581 1.2604 10 6 4.0929 1.5479 2.3428 11 6 4.5114 0.8523 3.6396 12 1 5.4545 0.3287 3.4830 13 8 3.5039 -0.0855 4.0237 14 6 4.6823 1.8801 4.7284 15 1 4.5101 2.9250 4.5164 16 6 5.0595 1.4866 5.9948 17 7 5.2707 0.2144 6.2525 18 14 5.2721 2.7607 7.3442 19 1 3.9874 3.4743 7.5580 20 1 5.6782 2.0855 8.6029 21 1 6.3189 3.7351 6.9446 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8464 0.8901 26 1 1.6885 1.8464 -0.8899 27 1 4.1121 0.6928 -2.0510 28 1 3.3173 -0.6517 -1.1708 29 1 6.1812 0.2950 -1.0309 30 1 5.5185 -1.3426 -0.7496 31 1 6.1200 0.7160 1.2189 32 1 5.4938 -0.9305 1.5057 33 1 3.1188 2.0172 2.4802 34 1 4.8296 2.3087 2.0845 35 1 2.6361 0.3115 4.1801 36 1 5.5357 -0.0625 7.1436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931257358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:05 Heat of formation + Delta-G solvation = -118.503664 kcal Electronic energy + Delta-G solvation = -16892.004041 eV Core-core repulsion = 14182.151557 eV Total energy + Delta-G solvation = -2709.852484 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.35832 -38.27266 -37.27526 -34.24278 -33.03933 -31.56197 -29.45493 -27.44032 -26.34110 -25.59305 -23.09767 -21.25765 -21.01171 -19.05227 -17.50834 -16.85076 -16.66305 -16.58476 -16.48635 -16.07030 -15.50510 -15.00802 -14.92226 -14.38922 -13.75369 -13.61462 -13.31928 -13.10359 -12.83754 -12.74106 -12.50645 -12.37989 -12.10106 -12.05169 -11.92163 -11.54231 -11.37639 -11.00296 -10.70356 -10.44048 -10.07769 -9.14332 -8.13490 -6.40726 1.39216 1.41560 1.49866 2.37711 3.00529 3.09528 3.13180 3.72745 3.85096 4.10024 4.30100 4.33457 4.38975 4.41072 4.47016 4.52790 4.62568 4.64773 4.68249 4.79789 4.92168 4.92864 5.02313 5.03666 5.09310 5.26019 5.45273 5.58374 5.75323 6.00303 6.16156 6.23403 6.46390 6.73431 7.33571 7.60611 8.91013 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032341 B = 0.006988 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.565996 B = 4006.092573 C = 4398.785309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.081 3.919 4 C 0.052 3.948 5 H 0.069 0.931 6 C -0.103 4.103 7 C -0.121 4.121 8 C 0.038 3.962 9 N -0.510 5.510 10 C 0.042 3.958 11 C 0.239 3.761 12 H 0.016 0.984 13 O -0.571 6.571 14 C -0.591 4.591 15 H 0.059 0.941 16 C 0.025 3.975 17 N -0.901 5.901 18 Si 0.963 3.037 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.267 1.267 22 H 0.036 0.964 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.350 0.650 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 3.281 -14.898 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C 0.004 3.996 4 C -0.056 4.056 5 H 0.087 0.913 6 C -0.141 4.141 7 C -0.159 4.159 8 C -0.091 4.091 9 N -0.234 5.234 10 C -0.086 4.086 11 C 0.181 3.819 12 H 0.034 0.966 13 O -0.374 6.374 14 C -0.629 4.629 15 H 0.078 0.922 16 C -0.178 4.178 17 N -0.537 5.537 18 Si 0.787 3.213 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.192 1.192 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.194 0.806 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.311 2.150 -14.656 15.736 hybrid contribution 0.257 1.689 1.087 2.025 sum -5.055 3.839 -13.569 14.980 Atomic orbital electron populations 1.22844 0.80487 1.03268 1.00304 1.87952 1.20366 1.27947 1.95339 1.22353 0.92267 0.84798 1.00133 1.23022 0.94467 0.97487 0.90613 0.91337 1.22364 0.95786 0.98858 0.97093 1.22375 0.98390 1.02424 0.92752 1.22755 0.90061 0.98910 0.97336 1.64663 1.22830 1.31090 1.04839 1.22835 0.99649 0.93009 0.93129 1.19139 0.86870 0.86932 0.88956 0.96571 1.86513 1.20946 1.38544 1.91352 1.22044 1.49783 0.94375 0.96745 0.92232 1.25943 0.93548 0.97034 1.01265 1.70232 1.44935 1.16855 1.21714 0.85574 0.79029 0.78896 0.77839 1.19078 1.20932 1.19232 0.94566 0.92554 0.89215 0.94518 0.90595 0.88811 0.90735 0.89940 0.90591 0.95152 0.93314 0.91620 0.95591 0.80594 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.40 -11.90 9.40 -148.98 -1.40 -13.30 16 3 C 0.08 2.20 5.85 71.98 0.42 2.62 16 4 C 0.05 1.54 2.74 45.26 0.12 1.66 16 5 H 0.07 1.87 8.02 -2.39 -0.02 1.85 16 6 C -0.10 -2.59 6.43 31.80 0.20 -2.39 16 7 C -0.12 -3.25 6.93 31.47 0.22 -3.04 16 8 C 0.04 1.39 5.53 86.44 0.48 1.87 16 9 N -0.51 -19.74 4.89 -858.29 -4.20 -23.93 16 10 C 0.04 1.83 4.26 86.30 0.37 2.20 16 11 C 0.24 12.90 2.80 29.85 0.08 12.99 16 12 H 0.02 1.00 7.24 -2.39 -0.02 0.98 16 13 O -0.57 -32.12 12.66 -148.98 -1.89 -34.00 16 14 C -0.59 -33.52 8.76 25.60 0.22 -33.29 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 16 C 0.02 1.41 5.40 84.65 0.46 1.86 16 17 N -0.90 -55.61 12.84 21.45 0.28 -55.33 16 18 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 24 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.04 1.07 7.24 -2.38 -0.02 1.05 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 28 H 0.07 2.06 7.01 -2.38 -0.02 2.05 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.03 1.15 7.64 -2.39 -0.02 1.14 16 32 H 0.05 2.05 8.11 -2.38 -0.02 2.03 16 33 H 0.07 2.74 7.22 -2.39 -0.02 2.72 16 34 H 0.03 1.11 7.94 -2.39 -0.02 1.09 16 35 H 0.35 17.75 9.04 -74.06 -0.67 17.08 16 36 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -69.13 292.88 -0.98 -70.11 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.38 Total: 24.05 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 3.83 Total: -13.67 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -3.92 Total: -79.27 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -3.29 Total: -47.30 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.13 -0.98 -70.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931257358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.397 kcal (2) G-P(sol) polarization free energy of solvation -69.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds