Wall clock time and date at job start Sun Mar 29 2020 21:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 111.00254 * 2 1 4 4 C 1.53002 * 109.47198 * 159.69833 * 3 2 1 5 5 H 1.08995 * 109.47315 * 56.22087 * 4 3 2 6 6 O 1.42900 * 109.46680 * 296.22061 * 4 3 2 7 7 C 1.50699 * 109.46764 * 176.22310 * 4 3 2 8 8 H 1.07997 * 120.00296 * 359.97438 * 7 4 3 9 9 C 1.37874 * 119.99713 * 179.97438 * 7 4 3 10 10 N 1.31516 * 120.00313 * 0.02562 * 9 7 4 11 11 Si 1.86802 * 120.00259 * 179.97438 * 9 7 4 12 12 H 1.48503 * 109.46832 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47346 * 119.99706 * 11 9 7 14 14 H 1.48505 * 109.47207 * 240.00037 * 11 9 7 15 15 C 1.46902 * 111.00055 * 236.04818 * 2 1 3 16 16 H 1.09001 * 110.54150 * 175.85755 * 15 2 1 17 17 C 1.54273 * 110.48656 * 53.24307 * 15 2 1 18 18 C 1.53875 * 106.59727 * 217.71399 * 17 15 2 19 19 C 1.54265 * 106.60004 * 0.02562 * 18 17 15 20 20 C 1.54892 * 110.48300 * 298.46979 * 15 2 1 21 21 H 1.08994 * 110.75374 * 38.12405 * 20 15 2 22 22 O 1.42894 * 110.75569 * 274.93082 * 20 15 2 23 23 H 1.08990 * 109.47515 * 176.80851 * 1 2 3 24 24 H 1.08998 * 109.46892 * 296.81212 * 1 2 3 25 25 H 1.09007 * 109.47070 * 56.80622 * 1 2 3 26 26 H 1.09004 * 109.47396 * 279.70170 * 3 2 1 27 27 H 1.09001 * 109.47233 * 39.69665 * 3 2 1 28 28 H 0.96702 * 114.00367 * 299.99942 * 6 4 3 29 29 H 0.96994 * 120.00651 * 180.02562 * 10 9 7 30 30 H 1.09003 * 110.02808 * 336.99899 * 17 15 2 31 31 H 1.08995 * 110.03144 * 98.42608 * 17 15 2 32 32 H 1.08997 * 110.03076 * 119.28540 * 18 17 15 33 33 H 1.09000 * 110.03087 * 240.71353 * 18 17 15 34 34 H 1.09000 * 110.48932 * 264.93413 * 19 18 17 35 35 H 1.08999 * 110.48452 * 142.28870 * 19 18 17 36 36 H 0.96699 * 114.00344 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4413 1.3627 0.5005 5 1 4.0350 0.6875 -0.1156 6 8 3.4724 0.9196 1.8587 7 6 4.0115 2.7549 0.4130 8 1 3.4037 3.5648 0.0376 9 6 5.3092 2.9946 0.8123 10 7 6.0496 2.0083 1.2690 11 14 6.0164 4.7202 0.7033 12 1 4.9883 5.6429 0.1584 13 1 6.4228 5.1751 2.0572 14 1 7.2004 4.7142 -0.1931 15 6 1.9954 -0.7659 -1.1376 16 1 3.0829 -0.7004 -1.1724 17 6 1.3816 -0.2601 -2.4595 18 6 1.1517 -1.5007 -3.3404 19 6 1.6332 -2.7171 -2.5229 20 6 1.5439 -2.2450 -1.0506 21 1 0.5209 -2.3155 -0.6812 22 8 2.4324 -2.9978 -0.2225 23 1 -0.3634 -1.0259 -0.0572 24 1 -0.3633 0.4635 0.9172 25 1 -0.3633 0.5627 -0.8600 26 1 1.9641 1.7728 -1.0130 27 1 1.3875 1.9941 0.6564 28 1 2.9638 1.4749 2.4654 29 1 6.9624 2.1770 1.5503 30 1 0.4329 0.2396 -2.2634 31 1 2.0704 0.4256 -2.9527 32 1 0.0915 -1.6029 -3.5719 33 1 1.7289 -1.4169 -4.2612 34 1 2.6623 -2.9669 -2.7809 35 1 0.9786 -3.5724 -2.6901 36 1 2.1937 -3.9309 -0.1358 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931744877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:15 Heat of formation + Delta-G solvation = -96.163557 kcal Electronic energy + Delta-G solvation = -17039.630256 eV Core-core repulsion = 14330.746512 eV Total energy + Delta-G solvation = -2708.883744 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.34008 -36.36853 -35.00140 -33.77619 -31.98591 -28.70221 -27.74150 -27.28980 -25.54145 -23.04411 -20.91902 -20.43850 -18.76477 -17.37506 -16.77325 -15.97720 -15.02409 -14.59185 -14.44519 -14.08479 -13.77250 -13.30635 -13.23833 -12.92513 -12.26885 -12.17073 -12.04785 -11.43496 -11.32570 -11.12329 -11.08110 -10.89306 -10.72504 -10.62531 -10.18840 -10.09349 -9.89062 -9.58792 -8.90755 -8.49444 -8.01393 -7.45287 -5.92178 -4.11059 3.30547 3.38490 3.41555 4.33545 4.38044 4.50145 4.71801 5.01523 5.07687 5.34612 5.35730 5.49613 5.56910 5.66565 5.70005 5.76035 5.81094 5.92202 6.08671 6.14999 6.20347 6.23124 6.33058 6.40249 6.59156 6.70537 6.91464 7.62788 7.69845 7.85742 7.97492 8.02008 8.29508 8.93734 9.55749 9.73926 11.11661 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.006966 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.976527 B = 4018.286308 C = 4080.122896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.518 5.518 3 C 0.030 3.970 4 C 0.240 3.760 5 H 0.053 0.947 6 O -0.552 6.552 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.079 3.921 10 N -0.856 5.856 11 Si 0.887 3.113 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.092 3.908 16 H 0.101 0.899 17 C -0.163 4.163 18 C -0.115 4.115 19 C -0.159 4.159 20 C 0.104 3.896 21 H 0.064 0.936 22 O -0.546 6.546 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.021 0.979 26 H 0.031 0.969 27 H 0.060 0.940 28 H 0.339 0.661 29 H 0.259 0.741 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 -7.350 -6.861 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.240 5.240 3 C -0.097 4.097 4 C 0.182 3.818 5 H 0.071 0.929 6 O -0.353 6.353 7 C -0.613 4.613 8 H 0.072 0.928 9 C -0.127 4.127 10 N -0.492 5.492 11 Si 0.714 3.286 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.017 4.017 16 H 0.119 0.881 17 C -0.203 4.203 18 C -0.154 4.154 19 C -0.197 4.197 20 C 0.045 3.955 21 H 0.081 0.919 22 O -0.349 6.349 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.182 0.818 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -10.165 -7.511 -6.560 14.240 hybrid contribution -0.517 1.358 -0.794 1.656 sum -10.683 -6.153 -7.353 14.354 Atomic orbital electron populations 1.22512 0.89748 1.00771 1.00108 1.62151 1.05568 1.15455 1.40793 1.23120 1.00944 0.86318 0.99356 1.19265 0.87129 0.94010 0.81374 0.92918 1.86605 1.74768 1.54869 1.19043 1.21718 0.98320 0.95125 1.46146 0.92815 1.25032 0.96893 0.96550 0.94194 1.70108 1.08154 1.30744 1.40172 0.86657 0.79101 0.85068 0.77760 1.19816 1.20873 1.20953 1.22473 1.01216 0.90695 0.87339 0.88137 1.22839 1.01912 0.98221 0.97307 1.21934 1.00647 0.94414 0.98372 1.23060 1.02147 0.97914 0.96585 1.22900 0.92713 0.91827 0.88073 0.91871 1.86711 1.53484 1.24085 1.70641 0.92159 0.91798 0.96058 0.95098 0.92169 0.81837 0.93106 0.91085 0.91123 0.92150 0.91749 0.90571 0.91798 0.78761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.76 60.06 0.53 0.78 16 2 N -0.52 -9.88 4.64 -232.88 -1.08 -10.96 16 3 C 0.03 0.64 4.49 -3.82 -0.02 0.62 16 4 C 0.24 6.37 2.92 -27.88 -0.08 6.29 16 5 H 0.05 1.56 6.78 -51.93 -0.35 1.21 16 6 O -0.55 -15.24 12.66 -35.23 -0.45 -15.68 16 7 C -0.57 -16.20 8.76 -34.44 -0.30 -16.50 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.08 2.28 5.40 -17.82 -0.10 2.19 16 10 N -0.86 -26.13 12.84 55.43 0.71 -25.42 16 11 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.09 1.63 2.56 -66.05 -0.17 1.46 16 16 H 0.10 2.15 6.73 -51.93 -0.35 1.80 16 17 C -0.16 -2.38 5.23 -25.61 -0.13 -2.52 16 18 C -0.12 -1.36 6.80 -25.61 -0.17 -1.54 16 19 C -0.16 -1.90 6.55 -25.08 -0.16 -2.06 16 20 C 0.10 1.54 3.76 -24.75 -0.09 1.45 16 21 H 0.06 0.86 5.82 -51.93 -0.30 0.56 16 22 O -0.55 -8.90 13.45 -35.23 -0.47 -9.38 16 23 H 0.06 0.82 5.82 -51.93 -0.30 0.51 16 24 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 25 H 0.02 0.30 6.08 -51.92 -0.32 -0.02 16 26 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 27 H 0.06 1.25 7.92 -51.93 -0.41 0.84 16 28 H 0.34 8.35 9.04 45.56 0.41 8.77 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.07 1.00 5.43 -51.93 -0.28 0.71 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.37 3.95 9.12 45.56 0.42 4.37 16 LS Contribution 284.43 15.07 4.29 4.29 Total: -1.00 -33.13 284.43 -6.66 -39.79 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -3.94 Total: 10.65 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -0.70 Total: -9.83 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.37 Total: -36.38 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.92 Total: -25.06 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.13 -6.66 -39.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931744877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.372 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds