Wall clock time and date at job start Sun Mar 29 2020 21:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 111.00254 * 2 1 4 4 C 1.53002 * 109.47198 * 159.69833 * 3 2 1 5 5 H 1.08995 * 109.47315 * 56.22087 * 4 3 2 6 6 O 1.42900 * 109.46680 * 296.22061 * 4 3 2 7 7 C 1.50699 * 109.46764 * 176.22310 * 4 3 2 8 8 H 1.07997 * 120.00296 * 359.97438 * 7 4 3 9 9 C 1.37874 * 119.99713 * 179.97438 * 7 4 3 10 10 N 1.31516 * 120.00313 * 0.02562 * 9 7 4 11 11 Si 1.86802 * 120.00259 * 179.97438 * 9 7 4 12 12 H 1.48503 * 109.46832 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47346 * 119.99706 * 11 9 7 14 14 H 1.48505 * 109.47207 * 240.00037 * 11 9 7 15 15 C 1.46902 * 111.00055 * 236.04818 * 2 1 3 16 16 H 1.09001 * 110.54150 * 175.85755 * 15 2 1 17 17 C 1.54273 * 110.48656 * 53.24307 * 15 2 1 18 18 C 1.53875 * 106.59727 * 217.71399 * 17 15 2 19 19 C 1.54265 * 106.60004 * 0.02562 * 18 17 15 20 20 C 1.54892 * 110.48300 * 298.46979 * 15 2 1 21 21 H 1.08994 * 110.75374 * 38.12405 * 20 15 2 22 22 O 1.42894 * 110.75569 * 274.93082 * 20 15 2 23 23 H 1.08990 * 109.47515 * 176.80851 * 1 2 3 24 24 H 1.08998 * 109.46892 * 296.81212 * 1 2 3 25 25 H 1.09007 * 109.47070 * 56.80622 * 1 2 3 26 26 H 1.09004 * 109.47396 * 279.70170 * 3 2 1 27 27 H 1.09001 * 109.47233 * 39.69665 * 3 2 1 28 28 H 0.96702 * 114.00367 * 299.99942 * 6 4 3 29 29 H 0.96994 * 120.00651 * 180.02562 * 10 9 7 30 30 H 1.09003 * 110.02808 * 336.99899 * 17 15 2 31 31 H 1.08995 * 110.03144 * 98.42608 * 17 15 2 32 32 H 1.08997 * 110.03076 * 119.28540 * 18 17 15 33 33 H 1.09000 * 110.03087 * 240.71353 * 18 17 15 34 34 H 1.09000 * 110.48932 * 264.93413 * 19 18 17 35 35 H 1.08999 * 110.48452 * 142.28870 * 19 18 17 36 36 H 0.96699 * 114.00344 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4413 1.3627 0.5005 5 1 4.0350 0.6875 -0.1156 6 8 3.4724 0.9196 1.8587 7 6 4.0115 2.7549 0.4130 8 1 3.4037 3.5648 0.0376 9 6 5.3092 2.9946 0.8123 10 7 6.0496 2.0083 1.2690 11 14 6.0164 4.7202 0.7033 12 1 4.9883 5.6429 0.1584 13 1 6.4228 5.1751 2.0572 14 1 7.2004 4.7142 -0.1931 15 6 1.9954 -0.7659 -1.1376 16 1 3.0829 -0.7004 -1.1724 17 6 1.3816 -0.2601 -2.4595 18 6 1.1517 -1.5007 -3.3404 19 6 1.6332 -2.7171 -2.5229 20 6 1.5439 -2.2450 -1.0506 21 1 0.5209 -2.3155 -0.6812 22 8 2.4324 -2.9978 -0.2225 23 1 -0.3634 -1.0259 -0.0572 24 1 -0.3633 0.4635 0.9172 25 1 -0.3633 0.5627 -0.8600 26 1 1.9641 1.7728 -1.0130 27 1 1.3875 1.9941 0.6564 28 1 2.9638 1.4749 2.4654 29 1 6.9624 2.1770 1.5503 30 1 0.4329 0.2396 -2.2634 31 1 2.0704 0.4256 -2.9527 32 1 0.0915 -1.6029 -3.5719 33 1 1.7289 -1.4169 -4.2612 34 1 2.6623 -2.9669 -2.7809 35 1 0.9786 -3.5724 -2.6901 36 1 2.1937 -3.9309 -0.1358 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931744877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:15 Heat of formation + Delta-G solvation = -124.954683 kcal Electronic energy + Delta-G solvation = -17040.878733 eV Core-core repulsion = 14330.746512 eV Total energy + Delta-G solvation = -2710.132221 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.62037 -38.04045 -36.60918 -35.12468 -34.21469 -30.59176 -28.88369 -28.46934 -27.39903 -24.65503 -22.66277 -21.57602 -20.16193 -19.08985 -18.43219 -17.27903 -16.67398 -16.34085 -16.27922 -15.56036 -15.34616 -14.86335 -14.65871 -14.27350 -13.87405 -13.54753 -13.29576 -13.06382 -12.94399 -12.82486 -12.61092 -12.41410 -12.25907 -12.13303 -11.97010 -11.35207 -11.30350 -10.99258 -10.73431 -10.66964 -10.09066 -8.94569 -8.12462 -6.40116 1.38941 1.39193 1.52288 2.37810 3.05019 3.13077 3.29608 3.61792 3.89238 4.00323 4.21920 4.26318 4.34319 4.41148 4.53879 4.57274 4.59574 4.64939 4.67616 4.84649 4.97476 5.01616 5.04187 5.11425 5.15634 5.30320 5.37288 5.60282 5.75711 6.02806 6.24983 6.37855 6.75096 7.04987 7.34652 7.64899 8.92333 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.006966 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.976527 B = 4018.286308 C = 4080.122896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.540 5.540 3 C 0.049 3.951 4 C 0.241 3.759 5 H 0.007 0.993 6 O -0.572 6.572 7 C -0.589 4.589 8 H 0.061 0.939 9 C 0.022 3.978 10 N -0.901 5.901 11 Si 0.964 3.036 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.082 3.918 16 H 0.045 0.955 17 C -0.158 4.158 18 C -0.109 4.109 19 C -0.149 4.149 20 C 0.106 3.894 21 H 0.083 0.917 22 O -0.581 6.581 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.037 0.963 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.350 0.650 29 H 0.261 0.739 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 -7.141 -7.818 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.079 4.079 4 C 0.183 3.817 5 H 0.025 0.975 6 O -0.375 6.375 7 C -0.627 4.627 8 H 0.079 0.921 9 C -0.180 4.180 10 N -0.538 5.538 11 Si 0.788 3.212 12 H -0.185 1.185 13 H -0.203 1.203 14 H -0.205 1.205 15 C -0.027 4.027 16 H 0.064 0.936 17 C -0.197 4.197 18 C -0.147 4.147 19 C -0.187 4.187 20 C 0.047 3.953 21 H 0.101 0.899 22 O -0.388 6.388 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.194 0.806 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -12.248 -7.318 -7.527 16.132 hybrid contribution 0.124 1.225 -0.461 1.315 sum -12.124 -6.093 -7.989 15.746 Atomic orbital electron populations 1.22576 0.86802 1.02509 1.01022 1.62019 1.08226 1.13727 1.42231 1.22666 0.97754 0.88404 0.99038 1.19100 0.89901 0.92182 0.80509 0.97499 1.86539 1.75498 1.55489 1.19925 1.22107 0.98847 0.95973 1.45750 0.92115 1.25982 0.97313 1.01099 0.93625 1.70268 1.08588 1.33440 1.41535 0.85452 0.78337 0.79488 0.77920 1.18488 1.20284 1.20520 1.22476 0.98323 0.93238 0.88710 0.93625 1.22762 1.01500 0.99409 0.96010 1.21947 1.02555 0.92453 0.97785 1.23003 1.02322 0.99149 0.94274 1.22967 0.92882 0.89645 0.89833 0.89937 1.86654 1.54677 1.26146 1.71319 0.90060 0.91411 0.94463 0.95138 0.91271 0.80571 0.93039 0.89928 0.92984 0.89326 0.91054 0.91898 0.88348 0.76159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 8.76 127.69 1.12 1.63 16 2 N -0.54 -20.55 4.64 -890.69 -4.13 -24.68 16 3 C 0.05 2.14 4.49 86.30 0.39 2.53 16 4 C 0.24 13.31 2.92 29.85 0.09 13.40 16 5 H 0.01 0.46 6.78 -2.39 -0.02 0.44 16 6 O -0.57 -32.73 12.66 -148.98 -1.89 -34.61 16 7 C -0.59 -33.85 8.76 25.60 0.22 -33.63 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.28 5.40 84.65 0.46 1.74 16 10 N -0.90 -56.73 12.84 21.45 0.28 -56.46 16 11 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 15 C 0.08 2.94 2.56 45.99 0.12 3.06 16 16 H 0.05 2.12 6.73 -2.39 -0.02 2.10 16 17 C -0.16 -4.45 5.23 31.32 0.16 -4.28 16 18 C -0.11 -2.28 6.80 31.32 0.21 -2.06 16 19 C -0.15 -3.21 6.55 31.66 0.21 -3.01 16 20 C 0.11 2.98 3.76 31.88 0.12 3.10 16 21 H 0.08 2.00 5.82 -2.39 -0.01 1.99 16 22 O -0.58 -18.92 13.45 -148.98 -2.00 -20.92 16 23 H 0.08 1.93 5.82 -2.39 -0.01 1.91 16 24 H 0.07 1.84 8.12 -2.39 -0.02 1.82 16 25 H 0.04 0.93 6.08 -2.38 -0.01 0.92 16 26 H 0.03 1.30 7.16 -2.38 -0.02 1.28 16 27 H 0.07 2.83 7.92 -2.39 -0.02 2.81 16 28 H 0.35 17.71 9.04 -74.06 -0.67 17.04 16 29 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.08 2.12 5.43 -2.39 -0.01 2.11 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.39 8.01 9.12 -74.06 -0.68 7.33 16 Total: -1.00 -74.13 284.43 -2.88 -77.01 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -0.26 Total: 30.46 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 3.10 Total: -17.52 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -3.85 Total: -81.14 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -3.89 Total: -55.53 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -74.13 -2.88 -77.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931744877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.945 kcal (2) G-P(sol) polarization free energy of solvation -74.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds