Wall clock time and date at job start Sun Mar 29 2020 21:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30388 * 126.18290 * 2 1 4 4 N 1.28663 * 109.51832 * 180.02562 * 3 2 1 5 5 C 1.31226 * 109.25523 * 359.97438 * 4 3 2 6 6 C 1.47870 * 126.38265 * 180.02562 * 5 4 3 7 7 C 1.39934 * 120.02222 * 179.70256 * 6 5 4 8 8 C 1.38338 * 120.35316 * 179.74054 * 7 6 5 9 9 C 1.37747 * 120.40852 * 0.51955 * 8 7 6 10 10 C 1.40778 * 120.03232 * 359.75690 * 9 8 7 11 11 C 1.41431 * 120.17364 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00521 * 334.94697 * 11 10 9 13 13 C 1.39928 * 119.99639 * 154.94170 * 11 10 9 14 14 N 1.30829 * 120.00266 * 342.62671 * 13 11 10 15 15 Si 1.86799 * 119.99906 * 162.63022 * 13 11 10 16 16 H 1.48498 * 109.47478 * 60.00062 * 15 13 11 17 17 H 1.48501 * 109.47279 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47135 * 299.99996 * 15 13 11 19 19 C 1.38968 * 120.02140 * 359.97438 * 6 5 4 20 20 O 1.34404 * 126.18769 * 179.69162 * 2 1 3 21 21 H 1.08999 * 109.47176 * 90.02464 * 1 2 3 22 22 H 1.09003 * 109.47315 * 210.02752 * 1 2 3 23 23 H 1.09004 * 109.47237 * 330.02233 * 1 2 3 24 24 H 1.07994 * 119.82475 * 359.97438 * 7 6 5 25 25 H 1.08001 * 119.79784 * 180.25733 * 8 7 6 26 26 H 1.08002 * 119.98698 * 179.74334 * 9 8 7 27 27 H 0.96999 * 120.00149 * 179.97438 * 14 13 11 28 28 H 1.07991 * 120.19879 * 0.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2767 1.0524 0.0000 4 7 3.5093 0.6834 -0.0005 5 6 3.5686 -0.6275 -0.0004 6 6 4.7975 -1.4499 -0.0003 7 6 4.7055 -2.8462 0.0062 8 6 5.8507 -3.6222 0.0009 9 6 7.0943 -3.0299 -0.0001 10 6 7.2064 -1.6266 -0.0008 11 6 8.4818 -1.0153 -0.0012 12 1 9.3350 -1.5457 0.3950 13 6 8.6381 0.2767 -0.5152 14 7 7.7169 0.7881 -1.2908 15 14 10.1621 1.2713 -0.0940 16 1 11.3708 0.5490 -0.5658 17 1 10.0868 2.5975 -0.7579 18 1 10.2401 1.4586 1.3771 19 6 6.0446 -0.8366 -0.0010 20 8 2.3005 -1.0847 0.0058 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3634 -0.8897 0.5143 23 1 -0.3634 0.8902 0.5135 24 1 3.7354 -3.3205 0.0116 25 1 5.7692 -4.6992 0.0018 26 1 7.9839 -3.6424 0.0000 27 1 7.8251 1.6839 -1.6467 28 1 6.1201 0.2406 -0.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117169995.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:42 Heat of formation + Delta-G solvation = 26.199527 kcal Electronic energy + Delta-G solvation = -14952.710513 eV Core-core repulsion = 12355.182744 eV Total energy + Delta-G solvation = -2597.527769 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.13090 -39.48567 -37.20159 -35.71909 -34.21479 -32.02623 -31.48862 -28.61772 -27.34792 -25.15973 -23.69402 -22.52721 -22.18297 -19.48808 -18.44642 -17.99899 -17.29580 -16.54850 -16.25674 -15.79256 -15.06602 -14.65283 -14.28844 -14.14803 -13.64937 -13.54160 -13.46782 -13.09119 -12.93594 -12.84790 -12.61645 -12.26109 -12.11117 -11.66737 -11.54609 -11.21374 -10.85375 -9.48204 -9.26779 -8.68172 -6.41461 -0.29808 0.86508 0.96840 1.25294 1.38615 1.45937 1.51842 1.63483 2.19316 2.68936 2.94151 3.49925 3.60598 3.94046 4.30607 4.41485 4.48656 4.54195 4.58268 4.74094 4.87502 5.03809 5.06830 5.15451 5.28402 5.43333 5.78318 5.91069 5.99924 6.21326 6.51509 6.84187 6.87010 7.27468 8.27977 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.030572 B = 0.007668 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.647430 B = 3650.613199 C = 4480.998099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.155 3.845 3 N -0.329 5.329 4 N -0.323 5.323 5 C 0.225 3.775 6 C -0.037 4.037 7 C -0.207 4.207 8 C -0.086 4.086 9 C -0.212 4.212 10 C 0.075 3.925 11 C -0.492 4.492 12 H 0.090 0.910 13 C 0.032 3.968 14 N -0.822 5.822 15 Si 0.983 3.017 16 H -0.252 1.252 17 H -0.273 1.273 18 H -0.260 1.260 19 C -0.132 4.132 20 O -0.226 6.226 21 H 0.120 0.880 22 H 0.117 0.883 23 H 0.122 0.878 24 H 0.124 0.876 25 H 0.143 0.857 26 H 0.117 0.883 27 H 0.289 0.711 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 -3.311 1.826 9.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.056 4.056 3 N -0.175 5.175 4 N -0.169 5.169 5 C 0.017 3.983 6 C -0.039 4.039 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.232 4.232 10 C 0.072 3.928 11 C -0.520 4.520 12 H 0.108 0.892 13 C -0.184 4.184 14 N -0.447 5.447 15 Si 0.803 3.197 16 H -0.176 1.176 17 H -0.198 1.198 18 H -0.185 1.185 19 C -0.153 4.153 20 O -0.107 6.107 21 H 0.138 0.862 22 H 0.135 0.865 23 H 0.140 0.860 24 H 0.142 0.858 25 H 0.160 0.840 26 H 0.135 0.865 27 H 0.099 0.901 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.859 -1.819 1.673 9.198 hybrid contribution 0.361 -0.404 -0.070 0.547 sum -8.499 -2.223 1.604 8.930 Atomic orbital electron populations 1.20737 0.75425 1.07483 1.07049 1.29306 0.99651 0.78694 0.97908 1.74251 0.96187 1.27469 1.19643 1.74743 1.12564 1.09736 1.19813 1.26047 0.84111 0.90211 0.97924 1.17418 0.85652 0.92430 1.08431 1.20727 0.99058 0.90592 1.12417 1.20872 0.91376 0.99670 0.98474 1.21478 0.97479 0.93948 1.10321 1.17873 0.93089 0.92250 0.89555 1.19867 0.95131 1.00246 1.36799 0.89221 1.26849 1.01219 0.98489 0.91807 1.69858 1.35580 1.16856 1.22401 0.85227 0.77631 0.77141 0.79650 1.17569 1.19773 1.18468 1.21378 0.90136 1.00050 1.03742 1.84822 1.16843 1.38533 1.70528 0.86170 0.86467 0.86010 0.85848 0.83965 0.86464 0.90078 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.79 10.51 71.23 0.75 -0.04 15 2 C 0.16 5.07 8.47 88.32 0.75 5.82 15 3 N -0.33 -13.74 12.22 -165.34 -2.02 -15.76 15 4 N -0.32 -15.90 11.90 -166.29 -1.98 -17.88 15 5 C 0.22 10.53 7.99 87.34 0.70 11.23 15 6 C -0.04 -1.83 5.87 -20.14 -0.12 -1.95 15 7 C -0.21 -8.83 9.73 22.70 0.22 -8.61 15 8 C -0.09 -3.47 10.01 22.18 0.22 -3.25 15 9 C -0.21 -9.72 9.78 22.77 0.22 -9.50 15 10 C 0.07 3.97 5.57 -21.32 -0.12 3.85 15 11 C -0.49 -25.94 9.05 23.47 0.21 -25.73 15 12 H 0.09 4.41 7.90 -2.91 -0.02 4.39 15 13 C 0.03 1.63 5.14 85.25 0.44 2.07 15 14 N -0.82 -44.70 10.97 21.82 0.24 -44.46 15 15 Si 0.98 38.60 29.59 68.60 2.03 40.63 15 16 H -0.25 -9.28 7.11 99.48 0.71 -8.58 15 17 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 18 H -0.26 -10.03 7.11 99.48 0.71 -9.33 15 19 C -0.13 -7.22 8.33 23.00 0.19 -7.03 15 20 O -0.23 -8.72 10.66 -8.45 -0.09 -8.81 15 21 H 0.12 1.40 8.14 -2.39 -0.02 1.38 15 22 H 0.12 1.27 8.14 -2.39 -0.02 1.26 15 23 H 0.12 1.53 8.14 -2.38 -0.02 1.51 15 24 H 0.12 4.53 7.92 -2.91 -0.02 4.51 15 25 H 0.14 4.46 8.06 -2.91 -0.02 4.44 15 26 H 0.12 4.85 8.06 -2.91 -0.02 4.82 15 27 H 0.29 14.52 8.30 -92.71 -0.77 13.75 15 28 H 0.11 6.59 5.98 -2.92 -0.02 6.57 15 Total: -1.00 -67.22 257.74 2.83 -64.39 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 1.18 Total: 15.02 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 3.47 Total: -33.13 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -3.76 Total: -78.09 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.09 Total: -8.81 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -67.22 2.83 -64.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117169995.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.589 kcal (2) G-P(sol) polarization free energy of solvation -67.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds