Wall clock time and date at job start Sun Mar 29 2020 22:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00231 * 2 1 4 4 H 1.48492 * 109.47371 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46752 * 300.00097 * 3 2 1 6 6 H 1.48499 * 109.46941 * 59.99672 * 3 2 1 7 7 C 1.37878 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00117 * 0.02562 * 7 2 1 10 10 S 1.81394 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.81407 * 102.99896 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46969 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47106 * 175.00186 * 12 11 10 14 14 C 1.52998 * 109.47429 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46788 * 299.99799 * 14 13 12 16 16 O 1.42903 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47329 * 59.99953 * 15 14 13 18 18 C 1.52998 * 109.46901 * 299.99578 * 17 15 14 19 19 H 0.96997 * 119.99475 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47038 * 59.99335 * 9 7 2 21 21 H 1.08996 * 109.46924 * 299.99602 * 9 7 2 22 22 H 1.08993 * 109.47422 * 59.99890 * 11 10 9 23 23 H 1.09006 * 109.46947 * 300.00056 * 11 10 9 24 24 H 1.08997 * 109.47655 * 54.99570 * 12 11 10 25 25 H 1.08997 * 109.47366 * 59.99207 * 13 12 11 26 26 H 1.09009 * 109.46785 * 299.99476 * 13 12 11 27 27 H 1.08997 * 109.47384 * 179.97438 * 14 13 12 28 28 H 1.08997 * 109.47329 * 59.99386 * 14 13 12 29 29 H 1.09008 * 109.47201 * 299.99563 * 15 14 13 30 30 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.47215 * 60.00152 * 17 15 14 32 32 H 1.08999 * 109.47164 * 180.02562 * 17 15 14 33 33 H 1.08997 * 109.47655 * 300.00305 * 18 17 15 34 34 H 1.09005 * 109.46908 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3516 -5.3367 0.0013 12 6 2.2084 -6.6042 0.0020 13 6 1.3036 -7.8314 0.1284 14 6 2.1603 -9.0991 0.1285 15 6 2.9505 -9.1805 -1.1791 16 8 3.7503 -10.3648 -1.1794 17 6 3.8554 -7.9533 -1.3056 18 6 2.9986 -6.6858 -1.3057 19 1 -0.4849 0.8401 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 0.7221 -5.3237 -0.8884 23 1 0.7227 -5.3232 0.8916 24 1 2.9003 -6.5747 0.8438 25 1 0.6117 -7.8610 -0.7133 26 1 0.7403 -7.7732 1.0598 27 1 1.5157 -9.9733 0.2189 28 1 2.8524 -9.0698 0.9700 29 1 2.2583 -9.2099 -2.0207 30 1 4.2798 -10.4816 -1.9800 31 1 4.5476 -7.9240 -0.4641 32 1 4.4180 -8.0112 -2.2373 33 1 2.3065 -6.7151 -2.1472 34 1 3.6433 -5.8114 -1.3953 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118002072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:23 Heat of formation + Delta-G solvation = -92.956517 kcal Electronic energy + Delta-G solvation = -13868.817222 eV Core-core repulsion = 11505.106754 eV Total energy + Delta-G solvation = -2363.710468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.13966 -36.05565 -33.13072 -31.34125 -30.83979 -28.51803 -25.82381 -23.06528 -22.75672 -21.23443 -19.80789 -17.34882 -16.48472 -15.68009 -15.30897 -14.63962 -14.53440 -14.39392 -13.66325 -13.27632 -12.83222 -12.63998 -12.38130 -12.25078 -12.06233 -11.85047 -11.31274 -11.14597 -10.89721 -10.79109 -10.62145 -10.50539 -10.18816 -9.93793 -9.71953 -9.46407 -8.79297 -8.60945 -6.63515 -6.18502 -4.22307 2.70938 3.25334 3.32490 3.39124 3.91706 4.03411 4.36378 4.64802 4.67691 4.90914 5.11726 5.18298 5.18723 5.29109 5.40315 5.44009 5.52289 5.71707 5.84583 5.93957 5.98560 6.06903 6.11255 6.14289 6.22601 6.46810 6.53246 7.11961 7.13741 7.48943 7.76552 8.03366 8.80030 9.40704 10.92988 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.070999 B = 0.004552 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.275597 B = 6150.123877 C = 6403.385719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.090 3.910 10 S -0.310 6.310 11 C -0.084 4.084 12 C -0.069 4.069 13 C -0.109 4.109 14 C -0.109 4.109 15 C 0.103 3.897 16 O -0.572 6.572 17 C -0.149 4.149 18 C -0.113 4.113 19 H 0.264 0.736 20 H 0.034 0.966 21 H 0.034 0.966 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.375 0.625 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -16.332 -2.520 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.057 4.057 10 S -0.083 6.083 11 C -0.233 4.233 12 C -0.088 4.088 13 C -0.148 4.148 14 C -0.147 4.147 15 C 0.045 3.955 16 O -0.378 6.378 17 C -0.187 4.187 18 C -0.151 4.151 19 H 0.074 0.926 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.222 0.778 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.316 -16.242 -1.930 16.916 hybrid contribution -0.813 1.053 -0.576 1.450 sum 3.503 -15.190 -2.506 15.788 Atomic orbital electron populations 1.69970 1.06153 1.27165 1.49948 1.24977 0.94966 0.99300 0.94723 0.86305 0.80106 0.82590 0.77718 1.19417 1.20754 1.20738 1.20745 0.93493 0.88812 1.51901 0.91445 1.21031 0.93719 0.91061 0.99905 1.86519 1.21527 1.02286 1.97976 1.23292 1.00273 0.95819 1.03890 1.20941 0.96686 0.92218 0.98971 1.21579 0.97681 0.93116 1.02466 1.21452 0.98496 0.97988 0.96771 1.21887 0.91704 0.83791 0.98164 1.86495 1.62178 1.43828 1.45298 1.22261 0.98807 0.95354 1.02278 1.21595 0.98873 0.97516 0.97115 0.92603 0.94776 0.94778 0.91109 0.91028 0.90386 0.91714 0.91179 0.91505 0.91217 0.92888 0.77783 0.91172 0.91942 0.92001 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.55 9.13 -34.44 -0.31 -14.86 16 8 H 0.07 1.93 7.71 -52.49 -0.40 1.52 16 9 C 0.09 2.36 5.70 36.01 0.21 2.57 16 10 S -0.31 -6.72 20.46 -107.50 -2.20 -8.92 16 11 C -0.08 -1.41 5.38 37.16 0.20 -1.21 16 12 C -0.07 -0.93 2.19 -90.62 -0.20 -1.13 16 13 C -0.11 -1.22 5.20 -26.73 -0.14 -1.36 16 14 C -0.11 -1.17 5.57 -26.73 -0.15 -1.32 16 15 C 0.10 1.07 3.47 -26.73 -0.09 0.98 16 16 O -0.57 -5.96 13.32 -35.23 -0.47 -6.43 16 17 C -0.15 -1.62 5.55 -26.73 -0.15 -1.76 16 18 C -0.11 -1.46 5.03 -26.73 -0.13 -1.60 16 19 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 20 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.38 2.35 9.08 45.56 0.41 2.76 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.24 7.13 -51.93 -0.37 0.87 16 LS Contribution 288.68 15.07 4.35 4.35 Total: -1.00 -30.29 288.68 -8.46 -38.75 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.99 Total: -0.75 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -0.87 Total: -17.99 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.47 Total: -6.43 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -6.72 SS G_CDS: -2.20 Total: -8.92 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.29 -8.46 -38.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118002072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.207 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds