Wall clock time and date at job start Sun Mar 29 2020 22:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00231 * 2 1 4 4 H 1.48492 * 109.47371 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46752 * 300.00097 * 3 2 1 6 6 H 1.48499 * 109.46941 * 59.99672 * 3 2 1 7 7 C 1.37878 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00117 * 0.02562 * 7 2 1 10 10 S 1.81394 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.81407 * 102.99896 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46969 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47106 * 175.00186 * 12 11 10 14 14 C 1.52998 * 109.47429 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46788 * 299.99799 * 14 13 12 16 16 O 1.42903 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47329 * 59.99953 * 15 14 13 18 18 C 1.52998 * 109.46901 * 299.99578 * 17 15 14 19 19 H 0.96997 * 119.99475 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47038 * 59.99335 * 9 7 2 21 21 H 1.08996 * 109.46924 * 299.99602 * 9 7 2 22 22 H 1.08993 * 109.47422 * 59.99890 * 11 10 9 23 23 H 1.09006 * 109.46947 * 300.00056 * 11 10 9 24 24 H 1.08997 * 109.47655 * 54.99570 * 12 11 10 25 25 H 1.08997 * 109.47366 * 59.99207 * 13 12 11 26 26 H 1.09009 * 109.46785 * 299.99476 * 13 12 11 27 27 H 1.08997 * 109.47384 * 179.97438 * 14 13 12 28 28 H 1.08997 * 109.47329 * 59.99386 * 14 13 12 29 29 H 1.09008 * 109.47201 * 299.99563 * 15 14 13 30 30 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 31 31 H 1.08997 * 109.47215 * 60.00152 * 17 15 14 32 32 H 1.08999 * 109.47164 * 180.02562 * 17 15 14 33 33 H 1.08997 * 109.47655 * 300.00305 * 18 17 15 34 34 H 1.09005 * 109.46908 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3516 -5.3367 0.0013 12 6 2.2084 -6.6042 0.0020 13 6 1.3036 -7.8314 0.1284 14 6 2.1603 -9.0991 0.1285 15 6 2.9505 -9.1805 -1.1791 16 8 3.7503 -10.3648 -1.1794 17 6 3.8554 -7.9533 -1.3056 18 6 2.9986 -6.6858 -1.3057 19 1 -0.4849 0.8401 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 0.7221 -5.3237 -0.8884 23 1 0.7227 -5.3232 0.8916 24 1 2.9003 -6.5747 0.8438 25 1 0.6117 -7.8610 -0.7133 26 1 0.7403 -7.7732 1.0598 27 1 1.5157 -9.9733 0.2189 28 1 2.8524 -9.0698 0.9700 29 1 2.2583 -9.2099 -2.0207 30 1 4.2798 -10.4816 -1.9800 31 1 4.5476 -7.9240 -0.4641 32 1 4.4180 -8.0112 -2.2373 33 1 2.3065 -6.7151 -2.1472 34 1 3.6433 -5.8114 -1.3953 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118002072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:23 Heat of formation + Delta-G solvation = -112.026398 kcal Electronic energy + Delta-G solvation = -13869.644154 eV Core-core repulsion = 11505.106754 eV Total energy + Delta-G solvation = -2364.537400 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.05660 -36.95005 -35.29896 -32.39392 -31.76137 -30.67609 -27.01237 -25.12332 -23.69817 -22.25606 -20.78415 -18.64851 -18.13314 -17.14065 -16.68955 -16.27904 -15.65435 -15.40991 -14.92309 -14.60932 -14.46973 -14.29237 -13.95941 -13.42788 -13.23635 -13.10713 -12.77186 -12.61923 -12.33656 -12.09859 -11.90676 -11.78832 -11.59047 -11.26265 -11.07471 -10.76555 -10.74666 -10.52306 -8.42873 -8.34484 -6.47717 1.05600 1.39314 1.39604 1.54763 2.06755 2.36100 3.00047 3.27102 3.70627 3.74321 3.86851 4.13829 4.24331 4.36587 4.43629 4.47895 4.54726 4.57383 4.76807 4.92004 4.93676 4.94009 5.06306 5.11179 5.15740 5.21405 5.25083 5.42908 5.51024 5.56288 5.88380 6.60212 6.91823 7.20571 8.77948 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.070999 B = 0.004552 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.275597 B = 6150.123877 C = 6403.385719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.090 3.910 10 S -0.315 6.315 11 C -0.072 4.072 12 C -0.063 4.063 13 C -0.101 4.101 14 C -0.109 4.109 15 C 0.106 3.894 16 O -0.586 6.586 17 C -0.142 4.142 18 C -0.112 4.112 19 H 0.270 0.730 20 H 0.012 0.988 21 H 0.011 0.989 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.393 0.607 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.194 -17.241 -2.929 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.080 0.920 9 C -0.058 4.058 10 S -0.088 6.088 11 C -0.221 4.221 12 C -0.083 4.083 13 C -0.140 4.140 14 C -0.146 4.146 15 C 0.047 3.953 16 O -0.394 6.394 17 C -0.180 4.180 18 C -0.150 4.150 19 H 0.079 0.921 20 H 0.031 0.969 21 H 0.029 0.971 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.243 0.757 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.863 -17.162 -2.349 17.992 hybrid contribution -0.989 1.221 -0.457 1.636 sum 3.874 -15.942 -2.805 16.644 Atomic orbital electron populations 1.70070 1.07724 1.28503 1.50249 1.25938 0.95889 1.03127 0.93773 0.85209 0.78739 0.77723 0.78256 1.18925 1.19695 1.19740 1.21050 0.93413 0.90308 1.52681 0.92038 1.20728 0.94209 0.93165 0.97659 1.86366 1.21577 1.02881 1.97966 1.23445 0.99931 0.94366 1.04329 1.20931 0.96619 0.91574 0.99153 1.21513 0.97346 0.91857 1.03320 1.21438 0.98491 0.97855 0.96860 1.21832 0.91682 0.83462 0.98280 1.86458 1.62571 1.43511 1.46854 1.22192 0.98490 0.94510 1.02776 1.21545 0.98819 0.97736 0.96865 0.92079 0.96929 0.97062 0.90559 0.90692 0.91236 0.90686 0.90524 0.90496 0.91973 0.91756 0.75718 0.92110 0.90331 0.91348 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 2 C 0.01 0.75 5.46 84.65 0.46 1.22 16 3 Si 0.98 44.09 29.54 68.60 2.03 46.12 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -31.22 9.13 25.60 0.23 -30.98 16 8 H 0.06 3.57 7.71 -2.91 -0.02 3.55 16 9 C 0.09 4.89 5.70 71.24 0.41 5.30 16 10 S -0.32 -13.84 20.46 -56.49 -1.16 -15.00 16 11 C -0.07 -2.38 5.38 71.98 0.39 -1.99 16 12 C -0.06 -1.63 2.19 -10.79 -0.02 -1.66 16 13 C -0.10 -2.03 5.20 30.59 0.16 -1.87 16 14 C -0.11 -2.07 5.57 30.59 0.17 -1.90 16 15 C 0.11 1.92 3.47 30.59 0.11 2.03 16 16 O -0.59 -10.63 13.32 -148.98 -1.98 -12.61 16 17 C -0.14 -2.79 5.55 30.59 0.17 -2.62 16 18 C -0.11 -2.74 5.03 30.60 0.15 -2.59 16 19 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 20 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 21 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 22 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.39 3.81 9.08 -74.06 -0.67 3.14 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.73 7.13 -2.38 -0.02 1.72 16 Total: -1.00 -65.12 288.68 1.78 -63.34 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.39 Total: 8.06 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 2.22 Total: -35.06 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.28 Total: -54.83 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.98 Total: -12.61 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -13.84 SS G_CDS: -1.16 Total: -15.00 kcal Total: -65.12 1.78 -63.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118002072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.691 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds