Wall clock time and date at job start Sun Mar 29 2020 21:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48498 * 109.46879 * 269.99822 * 3 2 1 5 5 H 1.48493 * 109.47191 * 29.99750 * 3 2 1 6 6 H 1.48504 * 109.47179 * 149.99639 * 3 2 1 7 7 C 1.37878 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47327 * 179.97438 * 9 7 2 11 11 O 1.45197 * 109.47646 * 180.02562 * 10 9 7 12 12 C 1.34224 * 117.00640 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99664 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00577 * 180.02562 * 12 11 10 15 15 C 1.52999 * 112.99794 * 309.66952 * 14 12 11 16 16 O 1.42903 * 109.47256 * 48.17531 * 15 14 12 17 17 C 1.54031 * 113.92542 * 81.60212 * 14 12 11 18 18 O 1.44174 * 85.52011 * 91.66287 * 17 14 12 19 19 C 1.44176 * 93.33766 * 24.19051 * 18 17 14 20 20 H 0.97002 * 120.00468 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47007 * 60.00101 * 9 7 2 22 22 H 1.08994 * 109.47257 * 299.99570 * 9 7 2 23 23 H 1.09002 * 109.47382 * 60.00085 * 10 9 7 24 24 H 1.09003 * 109.47518 * 300.00179 * 10 9 7 25 25 H 1.08997 * 109.47286 * 288.17092 * 15 14 12 26 26 H 1.09008 * 109.47201 * 168.16872 * 15 14 12 27 27 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 28 28 H 1.09005 * 113.86579 * 205.81287 * 17 14 12 29 29 H 1.09004 * 113.86696 * 337.51466 * 17 14 12 30 30 H 1.08999 * 113.86868 * 221.66112 * 19 18 17 31 31 H 1.09001 * 113.98017 * 89.97179 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5194 -4.9196 -0.0001 12 6 2.2504 -6.0453 -0.0007 13 8 3.4570 -5.9820 -0.0002 14 6 1.5663 -7.3881 -0.0019 15 6 0.4935 -7.5134 1.0817 16 8 -0.3532 -6.3627 1.0491 17 6 1.1000 -7.8503 -1.3953 18 8 2.3855 -8.4966 -1.4866 19 6 2.5387 -8.5814 -0.0555 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 2.8719 -3.6044 0.8905 24 1 2.8720 -3.6044 -0.8894 25 1 0.9709 -7.5857 2.0589 26 1 -0.1024 -8.4081 0.9013 27 1 -1.0580 -6.3741 1.7112 28 1 0.2587 -8.5430 -1.3715 29 1 0.9641 -7.0362 -2.1074 30 1 3.5438 -8.3474 0.2951 31 1 2.1376 -9.4969 0.3794 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118580395.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:47 Heat of formation + Delta-G solvation = -149.294916 kcal Electronic energy + Delta-G solvation = -16320.275616 eV Core-core repulsion = 13375.536167 eV Total energy + Delta-G solvation = -2944.739450 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.34687 -39.07226 -36.63855 -35.93358 -33.29804 -31.48620 -30.10565 -26.82905 -25.31301 -25.10276 -23.18498 -20.80728 -19.33455 -17.54990 -17.31021 -16.58461 -16.43468 -16.00462 -15.69386 -15.36166 -14.82766 -14.51449 -14.28613 -13.28173 -12.88209 -12.72066 -12.32093 -12.15021 -11.41769 -11.18666 -11.00108 -10.87826 -10.68485 -10.63815 -10.28345 -10.02689 -9.95372 -9.56422 -9.53807 -9.24647 -8.40826 -6.07007 -4.11122 2.44625 2.97566 3.30511 3.36273 3.40332 3.46761 3.76249 4.26965 4.41322 4.78423 4.91723 4.96780 5.00970 5.16280 5.28661 5.29386 5.47687 5.66324 5.72549 5.88880 6.14524 6.15445 6.70317 7.03889 7.60233 7.64178 7.69482 7.91110 8.23722 8.32301 8.94639 9.52893 11.04470 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.047097 B = 0.005580 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.368794 B = 5016.331945 C = 5325.900941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.072 3.928 11 O -0.325 6.325 12 C 0.484 3.516 13 O -0.513 6.513 14 C -0.135 4.135 15 C 0.088 3.912 16 O -0.544 6.544 17 C 0.062 3.938 18 O -0.373 6.373 19 C 0.064 3.936 20 H 0.263 0.737 21 H 0.028 0.972 22 H 0.029 0.971 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.380 0.620 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 -17.179 2.311 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.009 4.009 10 C 0.000 4.000 11 O -0.240 6.240 12 C 0.326 3.674 13 O -0.403 6.403 14 C -0.137 4.137 15 C 0.009 3.991 16 O -0.348 6.348 17 C -0.015 4.015 18 O -0.291 6.291 19 C -0.013 4.013 20 H 0.072 0.928 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.227 0.773 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.412 -16.885 1.602 16.965 hybrid contribution 0.068 0.880 0.669 1.107 sum -0.344 -16.004 2.271 16.168 Atomic orbital electron populations 1.69977 1.06074 1.26896 1.49909 1.24974 0.94902 0.99320 0.94924 0.86483 0.79766 0.82887 0.78237 1.20488 1.21065 1.19752 1.21009 0.93160 0.90230 1.52037 0.92343 1.19121 0.94082 0.88787 0.98911 1.23665 0.96453 0.79256 1.00663 1.86656 1.41046 1.14812 1.81459 1.22206 0.85692 0.86509 0.72964 1.90630 1.15538 1.88086 1.46072 1.23695 0.97407 0.93190 0.99376 1.22030 0.91079 0.89346 0.96600 1.86791 1.46063 1.41432 1.60537 1.24008 0.87544 0.96310 0.93632 1.89755 1.34552 1.82191 1.22638 1.23969 1.00695 0.94241 0.82344 0.92764 0.95406 0.95263 0.92546 0.92551 0.92868 0.92269 0.77343 0.88488 0.87981 0.87296 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.14 9.11 -34.44 -0.31 -15.46 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.76 5.35 -27.88 -0.15 0.61 16 10 C 0.07 1.70 5.40 37.15 0.20 1.90 16 11 O -0.33 -6.92 8.59 -46.09 -0.40 -7.32 16 12 C 0.48 9.09 6.96 36.00 0.25 9.34 16 13 O -0.51 -10.80 15.63 -18.75 -0.29 -11.09 16 14 C -0.14 -1.81 1.21 -154.59 -0.19 -1.99 16 15 C 0.09 0.92 6.54 37.16 0.24 1.16 16 16 O -0.54 -7.11 11.89 -55.60 -0.66 -7.77 16 17 C 0.06 0.75 8.34 37.60 0.31 1.06 16 18 O -0.37 -5.24 12.40 -35.23 -0.44 -5.67 16 19 C 0.06 0.73 8.17 37.60 0.31 1.03 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 24 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.42 7.93 -51.92 -0.41 0.01 16 27 H 0.38 3.12 9.12 45.56 0.42 3.53 16 28 H 0.10 0.84 7.96 -51.93 -0.41 0.43 16 29 H 0.10 1.34 8.09 -51.93 -0.42 0.92 16 30 H 0.11 1.32 7.37 -51.93 -0.38 0.94 16 31 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 274.52 15.07 4.14 4.14 Total: -1.00 -34.73 274.52 -4.65 -39.38 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -3.29 Total: -1.67 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 0.57 Total: -0.69 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.79 Total: -31.85 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.73 -4.65 -39.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118580395.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.913 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds