Wall clock time and date at job start Sun Mar 29 2020 21:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48498 * 109.46879 * 269.99822 * 3 2 1 5 5 H 1.48493 * 109.47191 * 29.99750 * 3 2 1 6 6 H 1.48504 * 109.47179 * 149.99639 * 3 2 1 7 7 C 1.37878 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47327 * 179.97438 * 9 7 2 11 11 O 1.45197 * 109.47646 * 180.02562 * 10 9 7 12 12 C 1.34224 * 117.00640 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99664 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00577 * 180.02562 * 12 11 10 15 15 C 1.52999 * 112.99794 * 309.66952 * 14 12 11 16 16 O 1.42903 * 109.47256 * 48.17531 * 15 14 12 17 17 C 1.54031 * 113.92542 * 81.60212 * 14 12 11 18 18 O 1.44174 * 85.52011 * 91.66287 * 17 14 12 19 19 C 1.44176 * 93.33766 * 24.19051 * 18 17 14 20 20 H 0.97002 * 120.00468 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47007 * 60.00101 * 9 7 2 22 22 H 1.08994 * 109.47257 * 299.99570 * 9 7 2 23 23 H 1.09002 * 109.47382 * 60.00085 * 10 9 7 24 24 H 1.09003 * 109.47518 * 300.00179 * 10 9 7 25 25 H 1.08997 * 109.47286 * 288.17092 * 15 14 12 26 26 H 1.09008 * 109.47201 * 168.16872 * 15 14 12 27 27 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 28 28 H 1.09005 * 113.86579 * 205.81287 * 17 14 12 29 29 H 1.09004 * 113.86696 * 337.51466 * 17 14 12 30 30 H 1.08999 * 113.86868 * 221.66112 * 19 18 17 31 31 H 1.09001 * 113.98017 * 89.97179 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5194 -4.9196 -0.0001 12 6 2.2504 -6.0453 -0.0007 13 8 3.4570 -5.9820 -0.0002 14 6 1.5663 -7.3881 -0.0019 15 6 0.4935 -7.5134 1.0817 16 8 -0.3532 -6.3627 1.0491 17 6 1.1000 -7.8503 -1.3953 18 8 2.3855 -8.4966 -1.4866 19 6 2.5387 -8.5814 -0.0555 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 2.8719 -3.6044 0.8905 24 1 2.8720 -3.6044 -0.8894 25 1 0.9709 -7.5857 2.0589 26 1 -0.1024 -8.4081 0.9013 27 1 -1.0580 -6.3741 1.7112 28 1 0.2587 -8.5430 -1.3715 29 1 0.9641 -7.0362 -2.1074 30 1 3.5438 -8.3474 0.2951 31 1 2.1376 -9.4969 0.3794 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118580395.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:46 Heat of formation + Delta-G solvation = -176.075930 kcal Electronic energy + Delta-G solvation = -16321.436928 eV Core-core repulsion = 13375.536167 eV Total energy + Delta-G solvation = -2945.900762 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.49135 -40.50382 -37.68867 -37.45867 -35.45491 -32.73201 -31.99509 -27.74753 -27.24160 -25.98892 -24.71105 -22.80662 -20.69205 -18.86714 -18.43424 -18.18593 -17.81701 -17.57148 -16.73075 -16.69015 -16.57326 -15.87876 -15.32113 -14.94814 -14.41783 -14.31665 -13.74396 -13.30460 -13.15389 -12.95183 -12.61390 -12.59642 -12.34103 -11.98016 -11.71250 -11.54999 -11.48100 -11.38751 -10.87539 -10.80350 -10.62546 -8.27924 -6.41808 1.01180 1.39448 1.42137 1.52369 1.62439 2.38510 2.49464 2.80522 3.05956 3.39420 3.59142 3.96736 4.16303 4.17111 4.21067 4.24089 4.44902 4.50399 4.59276 4.64829 4.73682 4.83379 5.02047 5.25510 5.45266 5.52098 5.72738 6.05169 6.66121 6.72203 7.01399 7.27926 8.84774 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.047097 B = 0.005580 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.368794 B = 5016.331945 C = 5325.900941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.062 0.938 9 C 0.038 3.962 10 C 0.087 3.913 11 O -0.334 6.334 12 C 0.475 3.525 13 O -0.543 6.543 14 C -0.144 4.144 15 C 0.089 3.911 16 O -0.581 6.581 17 C 0.066 3.934 18 O -0.404 6.404 19 C 0.074 3.926 20 H 0.269 0.731 21 H 0.003 0.997 22 H 0.008 0.992 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.397 0.603 28 H 0.143 0.857 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 -18.326 2.799 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.081 0.919 9 C 0.001 3.999 10 C 0.014 3.986 11 O -0.249 6.249 12 C 0.319 3.681 13 O -0.434 6.434 14 C -0.146 4.146 15 C 0.011 3.989 16 O -0.390 6.390 17 C -0.010 4.010 18 O -0.323 6.323 19 C -0.002 4.002 20 H 0.077 0.923 21 H 0.022 0.978 22 H 0.026 0.974 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.125 0.875 27 H 0.248 0.752 28 H 0.161 0.839 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.515 -18.058 2.102 18.187 hybrid contribution 0.070 1.162 0.517 1.274 sum -0.444 -16.896 2.619 17.104 Atomic orbital electron populations 1.70096 1.07811 1.28326 1.50215 1.25965 0.95860 1.03383 0.93935 0.85308 0.78510 0.77669 0.78711 1.19524 1.20100 1.18819 1.21381 0.93609 0.91359 1.52803 0.91938 1.18896 0.94097 0.90337 0.96578 1.23167 0.95210 0.79886 1.00378 1.86662 1.41263 1.14924 1.82067 1.23444 0.85745 0.87501 0.71400 1.90604 1.16953 1.88543 1.47320 1.23953 0.98917 0.90000 1.01710 1.22236 0.90564 0.90169 0.95904 1.86729 1.47234 1.43234 1.61757 1.24234 0.88281 0.96570 0.91950 1.89729 1.35709 1.82434 1.24426 1.24239 0.99748 0.95119 0.81058 0.92254 0.97842 0.97409 0.92569 0.92950 0.91751 0.87469 0.75237 0.83908 0.90101 0.88882 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.55 -32.49 9.11 25.60 0.23 -32.26 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 9 C 0.04 2.14 5.35 29.85 0.16 2.30 16 10 C 0.09 4.22 5.40 71.98 0.39 4.61 16 11 O -0.33 -14.61 8.59 -44.82 -0.38 -14.99 16 12 C 0.47 17.96 6.96 71.24 0.50 18.45 16 13 O -0.54 -23.28 15.63 21.96 0.34 -22.94 16 14 C -0.14 -3.59 1.21 -52.23 -0.06 -3.65 16 15 C 0.09 1.57 6.54 71.98 0.47 2.04 16 16 O -0.58 -14.37 11.89 -129.50 -1.54 -15.91 16 17 C 0.07 1.46 8.34 72.27 0.60 2.06 16 18 O -0.40 -10.62 12.40 -148.98 -1.85 -12.46 16 19 C 0.07 1.48 8.17 72.27 0.59 2.07 16 20 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 21 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 22 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 23 H 0.06 2.69 8.13 -2.39 -0.02 2.67 16 24 H 0.05 2.54 8.13 -2.39 -0.02 2.52 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.11 0.91 7.93 -2.38 -0.02 0.89 16 27 H 0.40 5.94 9.12 -74.06 -0.68 5.27 16 28 H 0.14 1.84 7.96 -2.38 -0.02 1.82 16 29 H 0.08 2.10 8.09 -2.39 -0.02 2.08 16 30 H 0.09 2.14 7.37 -2.39 -0.02 2.12 16 31 H 0.15 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -77.26 274.52 2.68 -74.58 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 0.46 Total: 4.80 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 3.34 Total: -3.46 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.28 Total: -56.01 kcal Atomic # 8 Polarization: -62.88 SS G_CDS: -3.43 Total: -66.31 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -77.26 2.68 -74.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118580395.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.498 kcal (2) G-P(sol) polarization free energy of solvation -77.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds