Wall clock time and date at job start Sun Mar 29 2020 21:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00192 * 2 1 4 4 H 1.48499 * 109.46935 * 269.99977 * 3 2 1 5 5 H 1.48500 * 109.47138 * 29.99801 * 3 2 1 6 6 H 1.48495 * 109.47310 * 149.99910 * 3 2 1 7 7 C 1.37877 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00140 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47150 * 179.97438 * 9 7 2 11 11 O 1.42098 * 108.57825 * 65.51161 * 10 9 7 12 12 O 1.42104 * 108.57711 * 294.48660 * 10 9 7 13 13 C 1.81397 * 101.92101 * 180.02562 * 10 9 7 14 14 C 1.50700 * 109.47408 * 180.02562 * 13 10 9 15 15 C 1.39869 * 125.90288 * 89.99594 * 14 13 10 16 16 C 1.35312 * 107.91889 * 180.26703 * 15 14 13 17 17 N 1.34951 * 107.74772 * 359.61173 * 16 15 14 18 18 H 0.97001 * 126.03184 * 180.15526 * 17 16 15 19 19 N 1.30837 * 125.89523 * 270.02809 * 14 13 10 20 20 H 0.96995 * 119.99739 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47082 * 59.99740 * 9 7 2 22 22 H 1.08997 * 109.47135 * 299.99557 * 9 7 2 23 23 H 1.09001 * 109.47569 * 59.99961 * 13 10 9 24 24 H 1.09003 * 109.47029 * 300.00002 * 13 10 9 25 25 H 1.08002 * 126.03560 * 359.97438 * 15 14 13 26 26 H 1.08008 * 126.12506 * 179.75891 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 16 2.4298 -3.8780 0.0005 11 8 3.1484 -3.8593 1.2263 12 8 3.1483 -3.8593 -1.2253 13 6 1.3243 -5.3161 -0.0003 14 6 2.1445 -6.5803 0.0003 15 6 2.5902 -7.2684 1.1335 16 6 3.2960 -8.3448 0.7162 17 7 3.2896 -8.3429 -0.6332 18 1 3.7159 -8.9989 -1.2068 19 7 2.5632 -7.2236 -1.0593 20 1 -0.4849 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 0.6957 -5.2908 -0.8904 24 1 0.6951 -5.2913 0.8895 25 1 2.4076 -6.9873 2.1602 26 1 3.7762 -9.0760 1.3498 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119621831.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:52 Heat of formation + Delta-G solvation = -1.864091 kcal Electronic energy + Delta-G solvation = -13757.245988 eV Core-core repulsion = 11158.112146 eV Total energy + Delta-G solvation = -2599.133842 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.13717 -35.94101 -34.99884 -33.31831 -33.00370 -29.97068 -29.11107 -28.11905 -23.50261 -21.54502 -20.06343 -18.22561 -17.88624 -16.82840 -15.89072 -15.23949 -15.10090 -14.45674 -14.24415 -13.93250 -13.50542 -13.03237 -12.46648 -12.23294 -12.08716 -11.36519 -11.07014 -11.00483 -10.87154 -10.76523 -10.65886 -10.53771 -9.79342 -9.37453 -8.95759 -8.69865 -8.67818 -6.30175 -4.39239 0.87842 1.90279 2.79213 2.83883 3.25085 3.30174 3.36830 3.85376 4.24369 4.38036 4.63083 4.84589 4.93765 5.07873 5.32622 5.57477 5.72724 5.73302 6.01302 6.56507 6.67926 6.73028 7.23257 7.51624 7.61873 7.78196 8.62690 9.27542 10.81795 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.069541 B = 0.006441 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.545616 B = 4345.968364 C = 4399.330175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.074 3.926 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.072 0.928 9 C -0.402 4.402 10 S 2.397 3.603 11 O -0.950 6.950 12 O -0.948 6.948 13 C -0.552 4.552 14 C 0.087 3.913 15 C -0.258 4.258 16 C 0.054 3.946 17 N -0.477 5.477 18 H 0.440 0.560 19 N -0.275 5.275 20 H 0.268 0.732 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.141 0.859 24 H 0.145 0.855 25 H 0.156 0.844 26 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.909 -13.980 1.889 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.090 0.910 9 C -0.537 4.537 10 S 2.580 3.420 11 O -0.948 6.948 12 O -0.945 6.945 13 C -0.676 4.676 14 C -0.081 4.081 15 C -0.288 4.288 16 C -0.093 4.093 17 N -0.186 5.186 18 H 0.284 0.716 19 N -0.100 5.100 20 H 0.078 0.922 21 H 0.105 0.895 22 H 0.105 0.895 23 H 0.159 0.841 24 H 0.163 0.837 25 H 0.174 0.826 26 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.682 -13.986 0.650 14.255 hybrid contribution -0.391 0.294 0.629 0.797 sum 2.291 -13.692 1.279 13.941 Atomic orbital electron populations 1.69946 1.06227 1.27690 1.47973 1.24930 0.95038 0.99564 0.93600 0.86347 0.80023 0.81707 0.78737 1.19933 1.20666 1.19065 1.20367 0.92998 0.88412 1.54974 0.90960 1.27534 1.09781 1.09569 1.06832 1.09054 0.79713 0.77994 0.75203 1.93470 1.69673 1.85839 1.45777 1.93487 1.69626 1.85713 1.45697 1.29152 1.14538 1.11865 1.12075 1.21184 0.98845 0.96453 0.91570 1.21565 1.08453 0.98498 1.00275 1.22595 1.00950 1.00455 0.85283 1.46325 1.43997 1.22565 1.05663 0.71646 1.77386 1.13015 0.97597 1.22012 0.92225 0.89520 0.89481 0.84081 0.83692 0.82648 0.80269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.84 13.29 55.43 0.74 -24.10 15 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 15 3 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 15 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.53 -14.71 9.13 -34.44 -0.31 -15.02 15 8 H 0.07 2.01 7.71 -52.48 -0.40 1.60 15 9 C -0.40 -9.54 5.56 36.00 0.20 -9.34 15 10 S 2.40 51.18 4.62 -107.50 -0.50 50.68 15 11 O -0.95 -22.43 18.10 -57.83 -1.05 -23.47 15 12 O -0.95 -23.35 18.10 -57.83 -1.05 -24.40 15 13 C -0.55 -8.98 6.37 36.01 0.23 -8.75 15 14 C 0.09 1.48 6.48 -82.41 -0.53 0.94 15 15 C -0.26 -3.70 10.74 -40.01 -0.43 -4.13 15 16 C 0.05 0.60 11.99 -17.22 -0.21 0.39 15 17 N -0.48 -5.85 7.36 30.45 0.22 -5.63 15 18 H 0.44 3.55 8.96 -182.61 -1.64 1.92 15 19 N -0.28 -4.72 12.70 33.67 0.43 -4.29 15 20 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 21 H 0.09 2.00 8.14 -51.92 -0.42 1.57 15 22 H 0.09 1.97 8.14 -51.93 -0.42 1.55 15 23 H 0.14 2.04 8.14 -51.92 -0.42 1.61 15 24 H 0.14 1.87 8.14 -51.92 -0.42 1.45 15 25 H 0.16 1.93 8.06 -52.49 -0.42 1.51 15 26 H 0.18 1.10 8.06 -52.48 -0.42 0.68 15 LS Contribution 254.40 15.07 3.83 3.83 Total: -1.00 -36.90 254.40 -7.25 -44.16 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.71 Total: 1.03 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: -1.15 Total: -33.94 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 1.39 Total: -34.02 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -2.09 Total: -47.87 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 51.18 SS G_CDS: -0.50 Total: 50.68 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -36.90 -7.25 -44.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119621831.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.293 kcal (2) G-P(sol) polarization free energy of solvation -36.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds