Wall clock time and date at job start Sun Mar 29 2020 21:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00192 * 2 1 4 4 H 1.48499 * 109.46935 * 269.99977 * 3 2 1 5 5 H 1.48500 * 109.47138 * 29.99801 * 3 2 1 6 6 H 1.48495 * 109.47310 * 149.99910 * 3 2 1 7 7 C 1.37877 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00140 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47150 * 179.97438 * 9 7 2 11 11 O 1.42098 * 108.57825 * 65.51161 * 10 9 7 12 12 O 1.42104 * 108.57711 * 294.48660 * 10 9 7 13 13 C 1.81397 * 101.92101 * 180.02562 * 10 9 7 14 14 C 1.50700 * 109.47408 * 180.02562 * 13 10 9 15 15 C 1.39869 * 125.90288 * 89.99594 * 14 13 10 16 16 C 1.35312 * 107.91889 * 180.26703 * 15 14 13 17 17 N 1.34951 * 107.74772 * 359.61173 * 16 15 14 18 18 H 0.97001 * 126.03184 * 180.15526 * 17 16 15 19 19 N 1.30837 * 125.89523 * 270.02809 * 14 13 10 20 20 H 0.96995 * 119.99739 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47082 * 59.99740 * 9 7 2 22 22 H 1.08997 * 109.47135 * 299.99557 * 9 7 2 23 23 H 1.09001 * 109.47569 * 59.99961 * 13 10 9 24 24 H 1.09003 * 109.47029 * 300.00002 * 13 10 9 25 25 H 1.08002 * 126.03560 * 359.97438 * 15 14 13 26 26 H 1.08008 * 126.12506 * 179.75891 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 16 2.4298 -3.8780 0.0005 11 8 3.1484 -3.8593 1.2263 12 8 3.1483 -3.8593 -1.2253 13 6 1.3243 -5.3161 -0.0003 14 6 2.1445 -6.5803 0.0003 15 6 2.5902 -7.2684 1.1335 16 6 3.2960 -8.3448 0.7162 17 7 3.2896 -8.3429 -0.6332 18 1 3.7159 -8.9989 -1.2068 19 7 2.5632 -7.2236 -1.0593 20 1 -0.4849 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 0.6957 -5.2908 -0.8904 24 1 0.6951 -5.2913 0.8895 25 1 2.4076 -6.9873 2.1602 26 1 3.7762 -9.0760 1.3498 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119621831.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:51 Heat of formation + Delta-G solvation = -32.039365 kcal Electronic energy + Delta-G solvation = -13758.554486 eV Core-core repulsion = 11158.112146 eV Total energy + Delta-G solvation = -2600.442340 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.18144 -37.75529 -36.81099 -35.36685 -34.17013 -31.05350 -30.99589 -29.41050 -25.50974 -22.54209 -21.29202 -19.64344 -19.15369 -18.80757 -17.59467 -16.93372 -16.85707 -16.07344 -15.55989 -15.18080 -14.49282 -14.44557 -14.25255 -13.98193 -13.39206 -13.31801 -12.91433 -12.84394 -12.70342 -12.52319 -12.19369 -11.78370 -11.73967 -11.05776 -10.74597 -10.33459 -9.74867 -8.38359 -6.54151 -0.79709 0.89331 1.39593 1.40656 1.52819 1.70354 1.88224 2.21152 2.33910 2.93637 2.95327 3.27480 3.48850 3.83486 4.21622 4.32952 4.62660 4.76660 4.81478 4.82566 4.98677 5.39585 5.50072 5.77845 6.39405 6.55110 6.58139 7.15914 8.74176 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.069541 B = 0.006441 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.545616 B = 4345.968364 C = 4399.330175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.564 4.564 8 H 0.059 0.941 9 C -0.420 4.420 10 S 2.416 3.584 11 O -0.980 6.980 12 O -0.990 6.990 13 C -0.523 4.523 14 C 0.053 3.947 15 C -0.290 4.290 16 C 0.082 3.918 17 N -0.463 5.463 18 H 0.457 0.543 19 N -0.321 5.321 20 H 0.274 0.726 21 H 0.087 0.913 22 H 0.093 0.907 23 H 0.160 0.840 24 H 0.182 0.818 25 H 0.169 0.831 26 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 -15.598 2.588 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.602 4.602 8 H 0.077 0.923 9 C -0.553 4.553 10 S 2.604 3.396 11 O -0.977 6.977 12 O -0.987 6.987 13 C -0.653 4.653 14 C -0.113 4.113 15 C -0.319 4.319 16 C -0.066 4.066 17 N -0.174 5.174 18 H 0.304 0.696 19 N -0.147 5.147 20 H 0.083 0.917 21 H 0.105 0.895 22 H 0.112 0.888 23 H 0.178 0.822 24 H 0.200 0.800 25 H 0.187 0.813 26 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 2.912 -15.537 1.332 15.863 hybrid contribution -0.448 0.571 0.419 0.838 sum 2.464 -14.965 1.750 15.268 Atomic orbital electron populations 1.70002 1.07264 1.28821 1.48384 1.25778 0.96008 1.02878 0.93090 0.85498 0.78927 0.77995 0.79190 1.19118 1.19073 1.19002 1.20763 0.92977 0.90887 1.55581 0.92263 1.27597 1.10533 1.10240 1.06976 1.08070 0.79358 0.78505 0.73705 1.93419 1.70940 1.86821 1.46481 1.93426 1.71271 1.86877 1.47129 1.28754 1.13166 1.08288 1.15067 1.21366 1.00107 0.96966 0.92871 1.21962 1.09834 0.99687 1.00440 1.23416 0.98444 0.99851 0.84852 1.46402 1.42665 1.21563 1.06779 0.69573 1.77277 1.14734 0.99574 1.23158 0.91698 0.89514 0.88849 0.82184 0.80006 0.81308 0.74794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.52 13.29 21.45 0.28 -51.24 15 2 C 0.03 1.42 5.46 84.66 0.46 1.88 15 3 Si 0.96 43.48 29.54 68.60 2.03 45.51 15 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 7 C -0.56 -32.20 9.13 25.60 0.23 -31.96 15 8 H 0.06 3.42 7.71 -2.91 -0.02 3.40 15 9 C -0.42 -20.37 5.56 71.23 0.40 -19.97 15 10 S 2.42 104.16 4.62 -56.49 -0.26 103.90 15 11 O -0.98 -46.69 18.10 -127.37 -2.31 -49.00 15 12 O -0.99 -49.98 18.10 -127.37 -2.30 -52.28 15 13 C -0.52 -16.23 6.37 71.24 0.45 -15.77 15 14 C 0.05 1.70 6.48 43.10 0.28 1.98 15 15 C -0.29 -7.47 10.74 21.99 0.24 -7.24 15 16 C 0.08 1.49 11.99 83.54 1.00 2.49 15 17 N -0.46 -10.00 7.36 -57.59 -0.42 -10.42 15 18 H 0.46 5.99 8.96 -213.33 -1.91 4.07 15 19 N -0.32 -10.49 12.70 -47.38 -0.60 -11.10 15 20 H 0.27 14.42 8.31 -92.71 -0.77 13.65 15 21 H 0.09 4.11 8.14 -2.39 -0.02 4.09 15 22 H 0.09 4.30 8.14 -2.39 -0.02 4.28 15 23 H 0.16 4.37 8.14 -2.39 -0.02 4.35 15 24 H 0.18 4.22 8.14 -2.39 -0.02 4.20 15 25 H 0.17 3.72 8.06 -2.91 -0.02 3.70 15 26 H 0.24 1.45 8.06 -2.91 -0.02 1.42 15 Total: -1.00 -81.50 254.40 -1.23 -82.73 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -0.71 Total: 10.49 kcal Atomic # 6 Polarization: -71.65 SS G_CDS: 3.06 Total: -68.59 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -0.74 Total: -72.76 kcal Atomic # 8 Polarization: -96.67 SS G_CDS: -4.61 Total: -101.28 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 104.16 SS G_CDS: -0.26 Total: 103.90 kcal Total: -81.50 -1.23 -82.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119621831.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.691 kcal (2) G-P(sol) polarization free energy of solvation -81.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds