Wall clock time and date at job start Sun Mar 29 2020 22:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99635 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00020 * 3 2 1 5 5 H 1.48499 * 109.47352 * 30.00173 * 3 2 1 6 6 H 1.48505 * 109.47119 * 150.00177 * 3 2 1 7 7 C 1.38811 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99670 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00268 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 C 1.52999 * 115.54923 * 34.13579 * 15 13 12 17 17 F 1.39900 * 109.47166 * 205.58465 * 16 15 13 18 18 C 1.52999 * 117.49844 * 248.46973 * 15 13 12 19 19 C 1.52996 * 117.49546 * 179.81078 * 15 13 12 20 20 H 0.97004 * 120.00691 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00254 * 0.02562 * 9 7 2 22 22 H 1.08998 * 109.47134 * 59.99418 * 10 9 7 23 23 H 1.09005 * 109.46544 * 299.99525 * 10 9 7 24 24 H 1.08998 * 109.47382 * 59.99561 * 11 10 9 25 25 H 1.09002 * 109.47216 * 299.99998 * 11 10 9 26 26 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 27 27 H 1.08999 * 109.47344 * 325.58402 * 16 15 13 28 28 H 1.09001 * 109.46882 * 85.58657 * 16 15 13 29 29 H 1.09007 * 117.49732 * 359.97438 * 18 15 13 30 30 H 1.08998 * 117.49972 * 145.01907 * 18 15 13 31 31 H 1.09004 * 117.49547 * 214.97632 * 19 15 13 32 32 H 1.08995 * 117.50518 * 359.97085 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 7 1.7965 -6.0884 -0.0006 13 6 1.1227 -7.2556 -0.0015 14 8 -0.0902 -7.2556 -0.0024 15 6 1.8762 -8.5607 0.0054 16 6 3.1915 -8.5591 0.7869 17 9 4.0422 -9.5423 0.2703 18 6 1.8048 -9.4244 -1.2555 19 6 1.0541 -9.8510 0.0084 20 1 -0.4851 0.8400 0.0004 21 1 0.3556 -2.3881 -0.0005 22 1 2.6849 -3.7144 0.8894 23 1 2.6847 -3.7144 -0.8906 24 1 0.4376 -4.7618 -0.8913 25 1 0.4370 -4.7622 0.8886 26 1 2.7665 -6.0883 -0.0002 27 1 3.6673 -7.5826 0.6957 28 1 2.9901 -8.7684 1.8375 29 1 1.2124 -9.0488 -2.0899 30 1 2.6947 -9.9917 -1.5280 31 1 1.4506 -10.6990 0.5670 32 1 -0.0317 -9.7561 0.0059 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133631871.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:13 Heat of formation + Delta-G solvation = -54.240104 kcal Electronic energy + Delta-G solvation = -15584.508091 eV Core-core repulsion = 12688.556068 eV Total energy + Delta-G solvation = -2895.952023 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.01845 -40.08013 -36.79588 -35.61831 -33.93781 -31.31583 -28.83430 -27.38743 -24.16786 -22.74369 -22.66346 -21.51699 -19.53424 -17.86736 -17.25298 -16.34268 -16.16631 -15.61317 -15.19966 -15.12155 -14.58285 -14.31123 -13.70884 -13.42898 -13.22496 -12.92198 -12.20073 -11.98655 -11.64703 -11.49112 -11.15497 -10.88807 -10.83937 -10.77350 -10.35586 -10.15195 -9.94744 -9.74009 -9.05191 -8.89445 -7.02851 -5.82236 -3.13325 2.39410 3.06054 3.40790 3.45685 3.47671 3.48626 4.08539 4.26807 4.38271 4.51147 4.56302 4.79285 4.94629 5.34887 5.39447 5.42182 5.46959 5.54166 5.64029 5.72315 5.89533 5.91125 6.09251 6.40515 6.64946 6.66985 7.49392 7.63272 8.19106 8.35146 9.46568 10.00709 10.35492 11.40306 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.053599 B = 0.004320 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.277051 B = 6480.397787 C = 6865.558168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.110 3.890 12 N -0.719 5.719 13 C 0.551 3.449 14 O -0.534 6.534 15 C -0.208 4.208 16 C 0.102 3.898 17 F -0.209 7.209 18 C -0.140 4.140 19 C -0.137 4.137 20 H 0.257 0.743 21 H 0.386 0.614 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.399 0.601 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.359 -18.947 0.423 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.013 4.013 12 N -0.370 5.370 13 C 0.336 3.664 14 O -0.411 6.411 15 C -0.212 4.212 16 C 0.047 3.953 17 F -0.190 7.190 18 C -0.177 4.177 19 C -0.174 4.174 20 H 0.067 0.933 21 H 0.220 0.780 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.233 0.767 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.622 -18.798 0.424 19.625 hybrid contribution 0.684 1.029 -0.010 1.236 sum 6.306 -17.769 0.415 18.859 Atomic orbital electron populations 1.69664 1.05179 1.25903 1.57102 1.24778 0.95554 0.97833 1.02559 0.86147 0.78616 0.83556 0.77576 1.21592 1.21658 1.20681 1.19189 0.91047 0.83835 1.43596 0.91013 1.42182 1.06009 0.99538 1.89728 1.20757 0.93471 0.85684 0.98471 1.21629 0.95493 0.81463 1.02746 1.45928 1.10439 1.05922 1.74760 1.19116 0.87297 0.83722 0.76293 1.90721 1.13520 1.87199 1.49645 1.22199 0.99447 0.92994 1.06571 1.21361 0.86116 0.90435 0.97392 1.92763 1.72183 1.65105 1.88996 1.23088 1.03356 1.00203 0.91047 1.23066 1.00005 0.94040 1.00267 0.93323 0.77985 0.95761 0.95759 0.91135 0.91075 0.76654 0.89959 0.89449 0.87838 0.86941 0.87712 0.86967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.41 5.60 -59.91 -0.34 -18.75 16 10 C 0.14 2.78 6.37 -4.04 -0.03 2.76 16 11 C 0.11 1.86 5.79 -4.04 -0.02 1.84 16 12 N -0.72 -9.63 5.45 -60.29 -0.33 -9.96 16 13 C 0.55 7.75 7.39 -10.98 -0.08 7.67 16 14 O -0.53 -9.65 16.26 5.55 0.09 -9.56 16 15 C -0.21 -2.17 2.61 -155.66 -0.41 -2.58 16 16 C 0.10 0.85 7.59 37.16 0.28 1.13 16 17 F -0.21 -2.01 15.93 2.25 0.04 -1.97 16 18 C -0.14 -1.31 9.63 -26.69 -0.26 -1.56 16 19 C -0.14 -1.30 9.74 -26.70 -0.26 -1.56 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.39 10.33 7.67 -40.82 -0.31 10.01 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.40 4.20 6.77 -40.82 -0.28 3.93 16 27 H 0.08 0.58 6.38 -51.93 -0.33 0.25 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 30 H 0.11 0.93 7.22 -51.93 -0.37 0.55 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.11 1.20 7.67 -51.93 -0.40 0.80 16 LS Contribution 280.64 15.07 4.23 4.23 Total: -1.00 -32.53 280.64 -5.83 -38.36 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.20 Total: 7.62 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.02 Total: 0.32 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.06 Total: -56.13 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.53 -5.83 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133631871.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.885 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds