Wall clock time and date at job start Sun Mar 29 2020 22:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99635 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00020 * 3 2 1 5 5 H 1.48499 * 109.47352 * 30.00173 * 3 2 1 6 6 H 1.48505 * 109.47119 * 150.00177 * 3 2 1 7 7 C 1.38811 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99670 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00268 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 C 1.52999 * 115.54923 * 34.13579 * 15 13 12 17 17 F 1.39900 * 109.47166 * 205.58465 * 16 15 13 18 18 C 1.52999 * 117.49844 * 248.46973 * 15 13 12 19 19 C 1.52996 * 117.49546 * 179.81078 * 15 13 12 20 20 H 0.97004 * 120.00691 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00254 * 0.02562 * 9 7 2 22 22 H 1.08998 * 109.47134 * 59.99418 * 10 9 7 23 23 H 1.09005 * 109.46544 * 299.99525 * 10 9 7 24 24 H 1.08998 * 109.47382 * 59.99561 * 11 10 9 25 25 H 1.09002 * 109.47216 * 299.99998 * 11 10 9 26 26 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 27 27 H 1.08999 * 109.47344 * 325.58402 * 16 15 13 28 28 H 1.09001 * 109.46882 * 85.58657 * 16 15 13 29 29 H 1.09007 * 117.49732 * 359.97438 * 18 15 13 30 30 H 1.08998 * 117.49972 * 145.01907 * 18 15 13 31 31 H 1.09004 * 117.49547 * 214.97632 * 19 15 13 32 32 H 1.08995 * 117.50518 * 359.97085 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 7 1.7965 -6.0884 -0.0006 13 6 1.1227 -7.2556 -0.0015 14 8 -0.0902 -7.2556 -0.0024 15 6 1.8762 -8.5607 0.0054 16 6 3.1915 -8.5591 0.7869 17 9 4.0422 -9.5423 0.2703 18 6 1.8048 -9.4244 -1.2555 19 6 1.0541 -9.8510 0.0084 20 1 -0.4851 0.8400 0.0004 21 1 0.3556 -2.3881 -0.0005 22 1 2.6849 -3.7144 0.8894 23 1 2.6847 -3.7144 -0.8906 24 1 0.4376 -4.7618 -0.8913 25 1 0.4370 -4.7622 0.8886 26 1 2.7665 -6.0883 -0.0002 27 1 3.6673 -7.5826 0.6957 28 1 2.9901 -8.7684 1.8375 29 1 1.2124 -9.0488 -2.0899 30 1 2.6947 -9.9917 -1.5280 31 1 1.4506 -10.6990 0.5670 32 1 -0.0317 -9.7561 0.0059 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133631871.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:13 Heat of formation + Delta-G solvation = -77.518947 kcal Electronic energy + Delta-G solvation = -15585.517538 eV Core-core repulsion = 12688.556068 eV Total energy + Delta-G solvation = -2896.961470 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.70046 -41.19302 -37.85762 -37.06609 -35.59259 -33.20202 -30.10399 -28.56349 -25.86377 -24.05038 -23.48904 -23.01362 -20.61700 -19.34809 -18.66181 -17.37991 -16.96639 -16.69590 -16.51880 -16.25569 -16.13979 -15.45976 -15.11807 -15.06274 -14.81605 -14.19325 -13.15121 -13.06093 -13.04097 -12.70976 -12.63553 -12.54892 -12.36990 -12.09272 -11.87040 -11.55517 -11.13439 -11.03114 -11.00028 -10.24174 -9.07870 -7.97589 -5.29233 1.32601 1.48808 1.51034 1.59450 1.92101 2.56973 2.66759 3.33818 3.37010 3.42920 3.57311 3.78041 3.97200 4.06891 4.17254 4.18425 4.30830 4.54130 4.64820 4.70760 4.77447 4.90477 4.99558 5.10345 5.15593 5.29149 5.48155 6.23055 6.40518 7.08674 7.29551 8.00877 8.23788 9.26107 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.053599 B = 0.004320 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.277051 B = 6480.397787 C = 6865.558168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.250 4.250 8 H 0.084 0.916 9 N -0.748 5.748 10 C 0.148 3.852 11 C 0.127 3.873 12 N -0.706 5.706 13 C 0.549 3.451 14 O -0.580 6.580 15 C -0.212 4.212 16 C 0.104 3.896 17 F -0.214 7.214 18 C -0.133 4.133 19 C -0.134 4.134 20 H 0.252 0.748 21 H 0.374 0.626 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.416 0.584 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.565 -19.838 0.649 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.381 4.381 8 H 0.101 0.899 9 N -0.391 5.391 10 C 0.021 3.979 11 C 0.002 3.998 12 N -0.359 5.359 13 C 0.337 3.663 14 O -0.460 6.460 15 C -0.216 4.216 16 C 0.050 3.950 17 F -0.195 7.195 18 C -0.170 4.170 19 C -0.171 4.171 20 H 0.061 0.939 21 H 0.205 0.795 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.254 0.746 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.907 -19.732 0.649 21.268 hybrid contribution 0.004 1.213 -0.098 1.217 sum 7.911 -18.520 0.552 20.146 Atomic orbital electron populations 1.69832 1.06870 1.26327 1.59095 1.25659 0.96397 1.01445 1.03242 0.85067 0.77746 0.78979 0.77489 1.21308 1.22309 1.18970 1.19654 0.91759 0.84839 1.41847 0.89850 1.42421 1.05768 1.01091 1.89816 1.20857 0.93569 0.84031 0.99399 1.21197 0.94851 0.82423 1.01316 1.45729 1.11174 1.04637 1.74361 1.19723 0.86940 0.84785 0.74891 1.90705 1.15716 1.87911 1.51619 1.22150 1.00389 0.90995 1.08048 1.21453 0.84817 0.91061 0.97712 1.92756 1.72153 1.65421 1.89158 1.23156 1.03776 0.99550 0.90497 1.23137 0.99155 0.94186 1.00632 0.93882 0.79450 0.94169 0.94490 0.92825 0.92484 0.74644 0.88517 0.87754 0.88687 0.85241 0.85385 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.62 13.06 21.65 0.28 -59.33 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 3 Si 0.98 45.34 29.55 68.60 2.03 47.36 16 4 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.75 -37.64 5.60 -343.46 -1.92 -39.57 16 10 C 0.15 5.52 6.37 86.38 0.55 6.07 16 11 C 0.13 4.25 5.79 86.38 0.50 4.75 16 12 N -0.71 -17.93 5.45 -463.06 -2.52 -20.46 16 13 C 0.55 14.98 7.39 87.66 0.65 15.63 16 14 O -0.58 -21.18 16.26 -3.04 -0.05 -21.23 16 15 C -0.21 -4.01 2.61 -52.93 -0.14 -4.15 16 16 C 0.10 1.42 7.59 71.98 0.55 1.96 16 17 F -0.21 -3.41 15.93 44.97 0.72 -2.69 16 18 C -0.13 -2.23 9.63 30.62 0.29 -1.94 16 19 C -0.13 -2.32 9.74 30.62 0.30 -2.02 16 20 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 21 H 0.37 20.40 7.67 -92.71 -0.71 19.69 16 22 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.42 7.70 6.77 -92.71 -0.63 7.07 16 27 H 0.10 1.02 6.38 -2.39 -0.02 1.01 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.13 1.77 7.22 -2.39 -0.02 1.75 16 31 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 2.01 7.67 -2.39 -0.02 1.99 16 Total: -1.00 -69.70 280.64 2.34 -67.36 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.20 Total: 24.90 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 4.01 Total: 3.66 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -4.17 Total: -119.36 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.72 Total: -2.69 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -69.70 2.34 -67.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133631871.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.158 kcal (2) G-P(sol) polarization free energy of solvation -69.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds