Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86804 * 119.99860 * 2 1 4 4 H 1.48501 * 109.46770 * 239.99823 * 3 2 1 5 5 H 1.48502 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46749 * 119.99936 * 3 2 1 7 7 C 1.38816 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00500 * 180.02562 * 7 2 1 9 9 N 1.36906 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.38867 * 119.99839 * 180.02562 * 9 7 2 11 11 C 1.39006 * 119.64718 * 0.30312 * 10 9 7 12 12 C 1.39632 * 118.91841 * 180.24754 * 11 10 9 13 13 C 1.47932 * 120.87813 * 179.73160 * 12 11 10 14 14 N 1.31432 * 125.83649 * 359.69791 * 13 12 11 15 15 C 1.33690 * 109.25531 * 180.02562 * 14 13 12 16 16 C 1.34971 * 108.37004 * 359.97438 * 15 14 13 17 17 N 1.36428 * 125.83228 * 179.71905 * 13 12 11 18 18 H 0.96999 * 126.49527 * 0.02562 * 17 13 12 19 19 C 1.40152 * 118.24104 * 359.46241 * 12 11 10 20 20 C 1.37859 * 119.17780 * 0.26901 * 19 12 11 21 21 N 1.31958 * 121.01225 * 0.02562 * 20 19 12 22 22 H 0.96998 * 120.00002 * 359.97438 * 1 2 3 23 23 H 0.96993 * 120.00396 * 0.02562 * 9 7 2 24 24 H 1.07996 * 120.53790 * 0.02562 * 11 10 9 25 25 H 1.07998 * 125.81898 * 180.02562 * 15 14 13 26 26 H 1.07995 * 126.48428 * 180.25889 * 16 15 14 27 27 H 1.07998 * 120.41122 * 180.25545 * 19 12 11 28 28 H 1.07998 * 119.49830 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0097 -1.2022 -0.0005 8 1 3.0897 -1.2023 -0.0001 9 7 1.3252 -2.3878 -0.0005 10 6 2.0195 -3.5904 -0.0005 11 6 3.4095 -3.5819 0.0059 12 6 4.0923 -4.7999 0.0005 13 6 5.5710 -4.8413 0.0010 14 7 6.3700 -3.7978 0.0006 15 6 7.6402 -4.2151 0.0007 16 6 7.6445 -5.5648 0.0017 17 7 6.3383 -5.9694 0.0015 18 1 6.0181 -6.8850 0.0012 19 6 3.3395 -5.9821 0.0004 20 6 1.9632 -5.9025 -0.0001 21 7 1.3497 -4.7342 -0.0009 22 1 -0.4850 0.8400 0.0004 23 1 0.3552 -2.3878 -0.0005 24 1 3.9525 -2.6484 0.0112 25 1 8.5140 -3.5804 0.0009 26 1 8.5148 -6.2042 0.0060 27 1 3.8315 -6.9435 0.0005 28 1 1.3781 -6.8103 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534883.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = 97.521279 kcal Electronic energy + Delta-G solvation = -14792.733986 eV Core-core repulsion = 12230.591712 eV Total energy + Delta-G solvation = -2562.142274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68644 -38.93220 -35.33070 -32.50624 -32.29420 -31.78993 -28.47346 -28.32308 -24.96339 -23.30306 -22.04993 -20.78868 -20.22417 -18.26008 -17.82503 -16.14099 -15.32772 -14.78563 -14.72830 -14.56443 -13.86048 -13.62585 -13.44454 -13.18598 -13.06706 -12.45478 -11.75775 -11.32761 -11.05901 -10.46276 -10.44524 -10.28713 -9.92355 -9.78969 -9.47804 -8.79434 -8.44060 -7.77063 -7.04170 -6.64583 -3.84385 1.55505 2.33388 2.66167 3.16895 3.18117 3.20183 3.23038 3.60693 3.99678 4.67857 4.70470 4.87270 5.16288 5.24430 5.45071 5.53459 5.73527 5.91879 6.16309 6.30308 6.40687 6.70093 6.87147 6.92472 7.11401 7.34540 7.44964 7.57877 7.83131 8.31644 8.57314 8.92132 9.26607 9.64065 10.51119 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.007587 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.557070 B = 3689.779154 C = 4760.492652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.109 0.891 9 N -0.523 5.523 10 C 0.359 3.641 11 C -0.203 4.203 12 C 0.057 3.943 13 C 0.265 3.735 14 N -0.473 5.473 15 C -0.028 4.028 16 C -0.063 4.063 17 N -0.564 5.564 18 H 0.419 0.581 19 C -0.309 4.309 20 C 0.167 3.833 21 N -0.576 5.576 22 H 0.278 0.722 23 H 0.405 0.595 24 H 0.137 0.863 25 H 0.169 0.831 26 H 0.175 0.825 27 H 0.103 0.897 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.253 -9.313 0.009 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.179 4.179 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.126 0.874 9 N -0.127 5.127 10 C 0.115 3.885 11 C -0.233 4.233 12 C 0.048 3.952 13 C 0.004 3.996 14 N -0.192 5.192 15 C -0.178 4.178 16 C -0.197 4.197 17 N -0.166 5.166 18 H 0.257 0.743 19 C -0.338 4.338 20 C 0.004 3.996 21 N -0.298 5.298 22 H 0.088 0.912 23 H 0.241 0.759 24 H 0.155 0.845 25 H 0.186 0.814 26 H 0.192 0.808 27 H 0.121 0.879 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.007 -7.839 0.009 11.941 hybrid contribution 1.189 -0.617 0.001 1.339 sum 10.196 -8.457 0.009 13.247 Atomic orbital electron populations 1.69695 1.06130 1.29059 1.46876 1.25379 0.95764 1.00151 0.96647 0.85807 0.78811 0.79653 0.79507 1.19393 1.20648 1.19401 1.19827 0.93343 0.82077 1.48036 0.87383 1.40858 1.08826 1.01142 1.61917 1.18157 0.88156 0.86198 0.95973 1.21171 0.93184 0.97631 1.11297 1.17422 0.85175 0.94246 0.98363 1.21593 0.92756 0.80847 1.04381 1.70452 1.01204 1.28771 1.18789 1.22371 0.95325 0.92437 1.07708 1.22738 0.86654 0.97516 1.12839 1.43421 1.06576 1.09982 1.56643 0.74299 1.20938 0.95270 0.95784 1.21845 1.21781 0.91054 0.94208 0.92548 1.67034 1.40620 0.97384 1.24806 0.91173 0.75898 0.84513 0.81404 0.80765 0.87900 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.64 13.05 55.49 0.72 -22.92 15 2 C 0.03 0.66 5.50 -17.45 -0.10 0.57 15 3 Si 0.94 20.04 29.55 -169.99 -5.02 15.01 15 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 7 C -0.30 -7.93 9.54 -15.07 -0.14 -8.07 15 8 H 0.11 2.76 5.65 -52.49 -0.30 2.46 15 9 N -0.52 -13.52 5.44 -11.19 -0.06 -13.58 15 10 C 0.36 8.69 7.61 -155.08 -1.18 7.51 15 11 C -0.20 -4.67 9.00 -38.78 -0.35 -5.02 15 12 C 0.06 1.13 5.91 -104.69 -0.62 0.52 15 13 C 0.26 4.78 7.80 -154.66 -1.21 3.58 15 14 N -0.47 -9.02 10.96 -11.20 -0.12 -9.15 15 15 C -0.03 -0.41 11.84 -17.90 -0.21 -0.63 15 16 C -0.06 -0.75 12.03 -16.53 -0.20 -0.95 15 17 N -0.56 -7.52 6.08 -10.54 -0.06 -7.58 15 18 H 0.42 4.20 8.19 -40.82 -0.33 3.87 15 19 C -0.31 -5.43 9.79 -39.00 -0.38 -5.81 15 20 C 0.17 3.12 11.16 -17.64 -0.20 2.92 15 21 N -0.58 -12.99 10.38 -12.52 -0.13 -13.12 15 22 H 0.28 7.01 8.31 -40.82 -0.34 6.67 15 23 H 0.41 10.77 8.01 -40.82 -0.33 10.44 15 24 H 0.14 3.28 5.80 -52.49 -0.30 2.97 15 25 H 0.17 1.95 8.06 -52.49 -0.42 1.53 15 26 H 0.18 1.30 8.06 -52.49 -0.42 0.88 15 27 H 0.10 1.41 7.30 -52.49 -0.38 1.03 15 28 H 0.14 2.03 8.06 -52.49 -0.42 1.61 15 LS Contribution 254.41 15.07 3.83 3.83 Total: -1.00 -30.06 254.41 -7.48 -37.54 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -2.05 Total: 15.36 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -4.58 Total: -5.39 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: 0.35 Total: -66.35 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.06 -7.48 -37.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534883.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.058 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds