Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86804 * 119.99860 * 2 1 4 4 H 1.48501 * 109.46770 * 239.99823 * 3 2 1 5 5 H 1.48502 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46749 * 119.99936 * 3 2 1 7 7 C 1.38816 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00500 * 180.02562 * 7 2 1 9 9 N 1.36906 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.38867 * 119.99839 * 180.02562 * 9 7 2 11 11 C 1.39006 * 119.64718 * 0.30312 * 10 9 7 12 12 C 1.39632 * 118.91841 * 180.24754 * 11 10 9 13 13 C 1.47932 * 120.87813 * 179.73160 * 12 11 10 14 14 N 1.31432 * 125.83649 * 359.69791 * 13 12 11 15 15 C 1.33690 * 109.25531 * 180.02562 * 14 13 12 16 16 C 1.34971 * 108.37004 * 359.97438 * 15 14 13 17 17 N 1.36428 * 125.83228 * 179.71905 * 13 12 11 18 18 H 0.96999 * 126.49527 * 0.02562 * 17 13 12 19 19 C 1.40152 * 118.24104 * 359.46241 * 12 11 10 20 20 C 1.37859 * 119.17780 * 0.26901 * 19 12 11 21 21 N 1.31958 * 121.01225 * 0.02562 * 20 19 12 22 22 H 0.96998 * 120.00002 * 359.97438 * 1 2 3 23 23 H 0.96993 * 120.00396 * 0.02562 * 9 7 2 24 24 H 1.07996 * 120.53790 * 0.02562 * 11 10 9 25 25 H 1.07998 * 125.81898 * 180.02562 * 15 14 13 26 26 H 1.07995 * 126.48428 * 180.25889 * 16 15 14 27 27 H 1.07998 * 120.41122 * 180.25545 * 19 12 11 28 28 H 1.07998 * 119.49830 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0097 -1.2022 -0.0005 8 1 3.0897 -1.2023 -0.0001 9 7 1.3252 -2.3878 -0.0005 10 6 2.0195 -3.5904 -0.0005 11 6 3.4095 -3.5819 0.0059 12 6 4.0923 -4.7999 0.0005 13 6 5.5710 -4.8413 0.0010 14 7 6.3700 -3.7978 0.0006 15 6 7.6402 -4.2151 0.0007 16 6 7.6445 -5.5648 0.0017 17 7 6.3383 -5.9694 0.0015 18 1 6.0181 -6.8850 0.0012 19 6 3.3395 -5.9821 0.0004 20 6 1.9632 -5.9025 -0.0001 21 7 1.3497 -4.7342 -0.0009 22 1 -0.4850 0.8400 0.0004 23 1 0.3552 -2.3878 -0.0005 24 1 3.9525 -2.6484 0.0112 25 1 8.5140 -3.5804 0.0009 26 1 8.5148 -6.2042 0.0060 27 1 3.8315 -6.9435 0.0005 28 1 1.3781 -6.8103 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534883.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = 76.871281 kcal Electronic energy + Delta-G solvation = -14793.629437 eV Core-core repulsion = 12230.591712 eV Total energy + Delta-G solvation = -2563.037726 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.86672 -40.62044 -37.10403 -34.12336 -33.59873 -33.46425 -30.15031 -29.61289 -26.83245 -24.80909 -23.54418 -22.10540 -21.54972 -19.65958 -19.57332 -17.71836 -17.01873 -16.39191 -16.15346 -16.00067 -15.29230 -15.11652 -14.90636 -14.65744 -14.56268 -13.85223 -13.55093 -13.07661 -12.72827 -12.14486 -12.12780 -12.09492 -11.21774 -11.01260 -10.94140 -10.60264 -10.14172 -9.03037 -8.80693 -8.52260 -5.81717 0.10701 0.70160 1.40760 1.41805 1.51843 1.52670 2.13254 2.25113 2.28864 2.92283 3.12744 3.43825 3.46019 3.99222 4.23063 4.40691 4.51609 4.55231 4.65038 4.80154 4.99845 5.16618 5.26914 5.29668 5.57322 5.73389 5.83377 6.12403 6.50281 6.70184 7.12474 7.15250 7.41751 7.82480 8.66034 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.007587 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.557070 B = 3689.779154 C = 4760.492652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.022 4.022 3 Si 1.001 2.999 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.321 4.321 8 H 0.102 0.898 9 N -0.557 5.557 10 C 0.354 3.646 11 C -0.243 4.243 12 C 0.065 3.935 13 C 0.218 3.782 14 N -0.515 5.515 15 C -0.065 4.065 16 C -0.015 4.015 17 N -0.543 5.543 18 H 0.437 0.563 19 C -0.276 4.276 20 C 0.159 3.841 21 N -0.596 5.596 22 H 0.278 0.722 23 H 0.394 0.606 24 H 0.113 0.887 25 H 0.190 0.810 26 H 0.232 0.768 27 H 0.157 0.843 28 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.120 -12.668 0.009 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.222 4.222 3 Si 0.823 3.177 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.451 4.451 8 H 0.119 0.881 9 N -0.166 5.166 10 C 0.113 3.887 11 C -0.272 4.272 12 C 0.056 3.944 13 C -0.042 4.042 14 N -0.235 5.235 15 C -0.214 4.214 16 C -0.151 4.151 17 N -0.147 5.147 18 H 0.279 0.721 19 C -0.304 4.304 20 C -0.003 4.003 21 N -0.319 5.319 22 H 0.087 0.913 23 H 0.228 0.772 24 H 0.131 0.869 25 H 0.207 0.793 26 H 0.248 0.752 27 H 0.174 0.826 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 11.895 -11.291 0.008 16.401 hybrid contribution 0.617 -0.074 0.000 0.622 sum 12.512 -11.365 0.009 16.903 Atomic orbital electron populations 1.69796 1.07352 1.29530 1.49557 1.26210 0.96558 1.02912 0.96548 0.84861 0.77573 0.75852 0.79401 1.19095 1.19896 1.19105 1.19948 0.93192 0.82999 1.48969 0.88054 1.40784 1.08045 1.01657 1.66091 1.18473 0.88743 0.86457 0.94979 1.21059 0.92801 0.98412 1.14975 1.17730 0.87003 0.93797 0.95856 1.21113 0.91984 0.82466 1.08611 1.70337 1.03499 1.30769 1.18935 1.22953 0.94509 0.94557 1.09403 1.23599 0.87184 0.97081 1.07228 1.43361 1.06606 1.09827 1.54916 0.72091 1.21559 0.94902 0.97102 1.16800 1.22695 0.92365 0.94341 0.90859 1.67106 1.41615 0.98095 1.25069 0.91258 0.77229 0.86909 0.79304 0.75165 0.82572 0.79755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.55 13.05 21.65 0.28 -52.27 15 2 C -0.02 -1.21 5.50 84.87 0.47 -0.75 15 3 Si 1.00 43.17 29.55 68.60 2.03 45.20 15 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 7 C -0.32 -18.08 9.54 84.04 0.80 -17.27 15 8 H 0.10 5.63 5.65 -2.91 -0.02 5.61 15 9 N -0.56 -30.91 5.44 -189.32 -1.03 -31.94 15 10 C 0.35 17.87 7.61 133.03 1.01 18.89 15 11 C -0.24 -11.59 9.00 22.79 0.21 -11.38 15 12 C 0.07 2.53 5.91 -19.91 -0.12 2.41 15 13 C 0.22 7.41 7.80 136.56 1.07 8.48 15 14 N -0.52 -19.22 10.96 -189.35 -2.08 -21.29 15 15 C -0.06 -1.72 11.84 83.66 0.99 -0.73 15 16 C -0.01 -0.27 12.03 83.18 1.00 0.73 15 17 N -0.54 -11.82 6.08 -187.27 -1.14 -12.96 15 18 H 0.44 6.03 8.19 -92.71 -0.76 5.27 15 19 C -0.28 -8.62 9.79 22.65 0.22 -8.40 15 20 C 0.16 5.43 11.16 84.58 0.94 6.37 15 21 N -0.60 -26.89 10.38 -193.51 -2.01 -28.89 15 22 H 0.28 14.80 8.31 -92.71 -0.77 14.03 15 23 H 0.39 22.60 8.01 -92.71 -0.74 21.86 15 24 H 0.11 5.84 5.80 -2.91 -0.02 5.82 15 25 H 0.19 3.88 8.06 -2.91 -0.02 3.85 15 26 H 0.23 1.59 8.06 -2.91 -0.02 1.57 15 27 H 0.16 3.21 7.30 -2.91 -0.02 3.19 15 28 H 0.19 4.52 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -72.06 254.41 2.37 -69.69 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.28 Total: 34.11 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 6.59 Total: -1.65 kcal Atomic # 7 Polarization: -141.38 SS G_CDS: -5.97 Total: -147.35 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -72.06 2.37 -69.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534883.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.562 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds