Wall clock time and date at job start Sun Mar 29 2020 22:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39575 * 119.65424 * 2 1 4 4 N 1.31511 * 120.77978 * 180.02562 * 3 2 1 5 5 C 1.33253 * 119.60407 * 359.97438 * 4 3 2 6 6 C 1.41807 * 119.66098 * 0.02562 * 5 4 3 7 7 C 1.40775 * 118.22406 * 179.97438 * 6 5 4 8 8 C 1.36236 * 118.96929 * 359.97438 * 7 6 5 9 9 N 1.32446 * 121.99976 * 359.74788 * 8 7 6 10 10 C 1.32063 * 122.59962 * 0.53157 * 9 8 7 11 11 N 1.38144 * 120.12669 * 179.75735 * 10 9 8 12 12 C 1.36745 * 119.99777 * 359.44158 * 11 10 9 13 13 H 1.08001 * 120.00368 * 0.27893 * 12 11 10 14 14 C 1.38914 * 119.99979 * 180.27853 * 12 11 10 15 15 N 1.31480 * 120.00261 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00109 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47474 * 89.99608 * 16 14 12 18 18 H 1.48498 * 109.47278 * 210.00043 * 16 14 12 19 19 H 1.48510 * 109.47116 * 329.99875 * 16 14 12 20 20 N 1.31542 * 119.65222 * 180.02562 * 2 1 3 21 21 H 1.09005 * 109.47244 * 269.98421 * 1 2 3 22 22 H 1.08999 * 109.46913 * 29.97731 * 1 2 3 23 23 H 1.08994 * 109.47275 * 149.97985 * 1 2 3 24 24 H 1.07997 * 119.60443 * 0.02562 * 3 2 1 25 25 H 1.08005 * 120.51687 * 180.02562 * 7 6 5 26 26 H 1.08001 * 118.99854 * 179.97438 * 8 7 6 27 27 H 0.97001 * 120.00314 * 179.72736 * 11 10 9 28 28 H 0.97008 * 120.00497 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.2129 0.0000 4 7 3.5124 1.2388 -0.0005 5 6 4.1933 0.0934 -0.0005 6 6 3.4927 -1.1395 -0.0005 7 6 4.2421 -2.3312 -0.0011 8 6 5.6024 -2.2552 -0.0021 9 7 6.2405 -1.0946 -0.0076 10 6 5.6084 0.0649 -0.0020 11 7 6.3256 1.2456 -0.0031 12 6 7.6927 1.2151 0.0017 13 1 8.2118 0.2680 0.0017 14 6 8.4139 2.4023 0.0064 15 7 9.7284 2.3730 0.0105 16 14 7.5163 4.0405 0.0071 17 1 7.2739 4.4716 1.4073 18 1 8.3439 5.0587 -0.6882 19 1 6.2172 3.8934 -0.6974 20 7 2.1578 -1.1432 -0.0005 21 1 -0.3634 -0.0003 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5141 24 1 1.6455 2.1412 0.0004 25 1 3.7465 -3.2908 -0.0015 26 1 6.1778 -3.1692 -0.0021 27 1 5.8595 2.0962 -0.0030 28 1 10.2321 3.2021 0.0134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537134.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:23 Heat of formation + Delta-G solvation = 76.255612 kcal Electronic energy + Delta-G solvation = -15093.422002 eV Core-core repulsion = 12530.357579 eV Total energy + Delta-G solvation = -2563.064423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.74439 -37.93669 -35.75219 -34.03048 -32.59568 -31.94658 -28.95713 -28.11119 -24.99186 -24.25252 -22.66426 -21.13016 -19.14426 -18.09717 -17.30245 -16.34681 -15.65289 -14.86832 -14.81372 -13.81966 -13.60240 -13.40372 -13.27544 -13.21105 -12.56165 -12.27644 -12.25286 -11.60529 -11.54843 -11.07738 -10.99881 -10.92169 -10.50228 -10.32498 -9.14181 -8.67601 -8.61739 -8.28724 -7.12327 -7.02367 -4.09279 1.01518 1.33907 2.62965 2.83886 2.86367 2.88050 3.62166 3.73857 4.17684 4.51294 4.55370 4.77671 5.02024 5.05302 5.25214 5.53784 5.61459 5.65733 5.75186 5.89185 6.13353 6.32302 6.51535 6.73206 6.94848 7.00710 7.30137 7.68733 7.97625 8.05287 8.42028 8.52669 8.74526 9.33962 10.03778 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.031949 B = 0.008453 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.184442 B = 3311.502084 C = 4172.536413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.114 3.886 3 C -0.016 4.016 4 N -0.416 5.416 5 C -0.006 4.006 6 C 0.183 3.817 7 C -0.323 4.323 8 C 0.199 3.801 9 N -0.568 5.568 10 C 0.352 3.648 11 N -0.484 5.484 12 C -0.263 4.263 13 H 0.145 0.855 14 C 0.044 3.956 15 N -0.820 5.820 16 Si 0.878 3.122 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.256 1.256 20 N -0.475 5.475 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.155 0.845 25 H 0.121 0.879 26 H 0.143 0.857 27 H 0.399 0.601 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.754 0.031 0.023 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.038 4.038 3 C -0.184 4.184 4 N -0.131 5.131 5 C -0.145 4.145 6 C 0.054 3.946 7 C -0.354 4.354 8 C 0.037 3.963 9 N -0.293 5.293 10 C 0.100 3.900 11 N -0.084 5.084 12 C -0.397 4.397 13 H 0.162 0.838 14 C -0.168 4.168 15 N -0.451 5.451 16 Si 0.702 3.298 17 H -0.183 1.183 18 H -0.188 1.188 19 H -0.181 1.181 20 N -0.193 5.193 21 H 0.095 0.905 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.172 0.828 25 H 0.139 0.861 26 H 0.160 0.840 27 H 0.236 0.764 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.229 0.321 0.011 9.234 hybrid contribution -1.376 1.229 0.004 1.846 sum -10.605 1.551 0.015 10.718 Atomic orbital electron populations 1.20636 0.88752 1.03225 1.02861 1.22343 0.97637 0.90088 0.93690 1.23104 0.90491 0.98171 1.06664 1.68110 1.08667 1.28972 1.07364 1.19920 0.94612 0.90720 1.09258 1.19249 0.89417 0.93505 0.92394 1.20515 0.94073 0.95927 1.24839 1.21673 0.91179 0.94479 0.88965 1.67068 1.38657 0.96069 1.27475 1.17611 0.83958 0.87291 1.01132 1.41375 1.07036 1.05081 1.54926 1.20170 0.78967 0.98118 1.42446 0.83812 1.25374 0.95803 0.99451 0.96171 1.69640 1.05343 1.30370 1.39768 0.86580 0.80512 0.82377 0.80365 1.18314 1.18794 1.18066 1.68579 1.07274 1.27932 1.15536 0.90478 0.90727 0.90625 0.82760 0.86125 0.83976 0.76387 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.18 36.01 0.37 -0.74 15 2 C 0.11 1.93 6.79 -82.22 -0.56 1.37 15 3 C -0.02 -0.27 10.85 -17.19 -0.19 -0.46 15 4 N -0.42 -8.75 9.78 -10.64 -0.10 -8.86 15 5 C -0.01 -0.13 6.63 -84.63 -0.56 -0.69 15 6 C 0.18 3.98 6.61 -84.82 -0.56 3.42 15 7 C -0.32 -6.49 10.07 -39.34 -0.40 -6.89 15 8 C 0.20 3.98 11.06 -18.01 -0.20 3.78 15 9 N -0.57 -13.35 9.05 -12.44 -0.11 -13.46 15 10 C 0.35 8.43 7.50 -155.22 -1.16 7.27 15 11 N -0.48 -11.59 5.19 -10.85 -0.06 -11.65 15 12 C -0.26 -6.71 10.18 -15.11 -0.15 -6.86 15 13 H 0.14 3.99 7.31 -52.49 -0.38 3.61 15 14 C 0.04 1.08 5.50 -17.45 -0.10 0.98 15 15 N -0.82 -20.79 13.96 55.50 0.77 -20.01 15 16 Si 0.88 17.79 27.74 -169.99 -4.71 13.07 15 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 19 H -0.26 -5.08 6.52 56.52 0.37 -4.71 15 20 N -0.48 -9.45 10.41 -7.04 -0.07 -9.52 15 21 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.07 0.66 8.08 -51.93 -0.42 0.24 15 23 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 24 H 0.16 2.06 8.06 -52.49 -0.42 1.64 15 25 H 0.12 2.16 8.06 -52.48 -0.42 1.74 15 26 H 0.14 2.30 8.06 -52.49 -0.42 1.88 15 27 H 0.40 9.04 5.16 -40.82 -0.21 8.83 15 28 H 0.29 6.65 8.31 -40.82 -0.34 6.31 15 LS Contribution 251.54 15.07 3.79 3.79 Total: -1.00 -28.38 251.54 -6.30 -34.68 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -2.30 Total: 10.77 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -3.51 Total: 1.19 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: 0.43 Total: -63.50 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -4.71 Total: 13.07 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.38 -6.30 -34.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537134.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.933 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds