Wall clock time and date at job start Sun Mar 29 2020 22:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39575 * 119.65424 * 2 1 4 4 N 1.31511 * 120.77978 * 180.02562 * 3 2 1 5 5 C 1.33253 * 119.60407 * 359.97438 * 4 3 2 6 6 C 1.41807 * 119.66098 * 0.02562 * 5 4 3 7 7 C 1.40775 * 118.22406 * 179.97438 * 6 5 4 8 8 C 1.36236 * 118.96929 * 359.97438 * 7 6 5 9 9 N 1.32446 * 121.99976 * 359.74788 * 8 7 6 10 10 C 1.32063 * 122.59962 * 0.53157 * 9 8 7 11 11 N 1.38144 * 120.12669 * 179.75735 * 10 9 8 12 12 C 1.36745 * 119.99777 * 359.44158 * 11 10 9 13 13 H 1.08001 * 120.00368 * 0.27893 * 12 11 10 14 14 C 1.38914 * 119.99979 * 180.27853 * 12 11 10 15 15 N 1.31480 * 120.00261 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00109 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47474 * 89.99608 * 16 14 12 18 18 H 1.48498 * 109.47278 * 210.00043 * 16 14 12 19 19 H 1.48510 * 109.47116 * 329.99875 * 16 14 12 20 20 N 1.31542 * 119.65222 * 180.02562 * 2 1 3 21 21 H 1.09005 * 109.47244 * 269.98421 * 1 2 3 22 22 H 1.08999 * 109.46913 * 29.97731 * 1 2 3 23 23 H 1.08994 * 109.47275 * 149.97985 * 1 2 3 24 24 H 1.07997 * 119.60443 * 0.02562 * 3 2 1 25 25 H 1.08005 * 120.51687 * 180.02562 * 7 6 5 26 26 H 1.08001 * 118.99854 * 179.97438 * 8 7 6 27 27 H 0.97001 * 120.00314 * 179.72736 * 11 10 9 28 28 H 0.97008 * 120.00497 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.2129 0.0000 4 7 3.5124 1.2388 -0.0005 5 6 4.1933 0.0934 -0.0005 6 6 3.4927 -1.1395 -0.0005 7 6 4.2421 -2.3312 -0.0011 8 6 5.6024 -2.2552 -0.0021 9 7 6.2405 -1.0946 -0.0076 10 6 5.6084 0.0649 -0.0020 11 7 6.3256 1.2456 -0.0031 12 6 7.6927 1.2151 0.0017 13 1 8.2118 0.2680 0.0017 14 6 8.4139 2.4023 0.0064 15 7 9.7284 2.3730 0.0105 16 14 7.5163 4.0405 0.0071 17 1 7.2739 4.4716 1.4073 18 1 8.3439 5.0587 -0.6882 19 1 6.2172 3.8934 -0.6974 20 7 2.1578 -1.1432 -0.0005 21 1 -0.3634 -0.0003 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5141 24 1 1.6455 2.1412 0.0004 25 1 3.7465 -3.2908 -0.0015 26 1 6.1778 -3.1692 -0.0021 27 1 5.8595 2.0962 -0.0030 28 1 10.2321 3.2021 0.0134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537134.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:22 Heat of formation + Delta-G solvation = 56.333649 kcal Electronic energy + Delta-G solvation = -15094.285883 eV Core-core repulsion = 12530.357579 eV Total energy + Delta-G solvation = -2563.928304 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.36383 -39.60008 -37.42537 -35.60544 -34.23498 -33.44583 -30.65676 -29.47872 -26.65298 -25.84940 -24.14809 -22.83215 -20.83739 -19.70245 -18.89233 -17.97776 -17.31602 -16.47864 -16.39019 -15.33954 -15.18340 -14.91478 -14.81840 -14.65820 -14.20394 -13.56882 -13.16126 -13.12884 -13.10284 -12.69231 -12.62617 -12.54085 -12.13166 -11.92092 -10.85391 -10.32307 -10.16206 -9.92177 -8.83899 -8.71105 -5.97971 -0.53357 -0.23913 1.00594 1.21762 1.29384 1.30937 2.01535 2.16922 2.50774 2.79645 3.15051 3.23954 3.35448 3.50284 3.83477 4.08813 4.16865 4.35460 4.62664 4.83645 4.90734 4.93132 5.08072 5.18617 5.30704 5.45227 5.64017 6.00799 6.27959 6.39781 6.79765 6.86653 7.00280 7.62979 8.41470 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.031949 B = 0.008453 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.184442 B = 3311.502084 C = 4172.536413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.125 3.875 3 C 0.014 3.986 4 N -0.434 5.434 5 C -0.049 4.049 6 C 0.155 3.845 7 C -0.297 4.297 8 C 0.183 3.817 9 N -0.600 5.600 10 C 0.370 3.630 11 N -0.512 5.512 12 C -0.301 4.301 13 H 0.100 0.900 14 C 0.002 3.998 15 N -0.885 5.885 16 Si 0.943 3.057 17 H -0.253 1.253 18 H -0.256 1.256 19 H -0.250 1.250 20 N -0.479 5.479 21 H 0.100 0.900 22 H 0.111 0.889 23 H 0.080 0.920 24 H 0.207 0.793 25 H 0.149 0.851 26 H 0.179 0.821 27 H 0.401 0.599 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.080 0.029 0.024 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.030 4.030 3 C -0.160 4.160 4 N -0.148 5.148 5 C -0.184 4.184 6 C 0.027 3.973 7 C -0.325 4.325 8 C 0.027 3.973 9 N -0.326 5.326 10 C 0.118 3.882 11 N -0.118 5.118 12 C -0.432 4.432 13 H 0.118 0.882 14 C -0.203 4.203 15 N -0.520 5.520 16 Si 0.763 3.237 17 H -0.178 1.178 18 H -0.180 1.180 19 H -0.175 1.175 20 N -0.196 5.196 21 H 0.119 0.881 22 H 0.129 0.871 23 H 0.099 0.901 24 H 0.224 0.776 25 H 0.166 0.834 26 H 0.196 0.804 27 H 0.239 0.761 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.482 0.196 0.012 14.483 hybrid contribution -0.572 0.822 0.009 1.001 sum -15.054 1.018 0.021 15.089 Atomic orbital electron populations 1.20875 0.84010 1.05394 1.04910 1.23415 1.00490 0.88991 0.90080 1.24205 0.89466 1.00688 1.01594 1.68153 1.10488 1.28554 1.07643 1.19870 0.94137 0.91945 1.12427 1.19524 0.90626 0.93563 0.93560 1.20985 0.94062 0.96857 1.20640 1.22314 0.91956 0.94715 0.88364 1.67164 1.40189 0.97157 1.28081 1.18147 0.85129 0.87588 0.97360 1.41061 1.06050 1.04940 1.59723 1.19616 0.79881 0.96972 1.46776 0.88240 1.25993 0.96292 1.02384 0.95639 1.69735 1.06705 1.31087 1.44443 0.85634 0.79431 0.78124 0.80503 1.17763 1.17955 1.17458 1.68703 1.06179 1.29621 1.15141 0.88119 0.87065 0.90091 0.77624 0.83376 0.80390 0.76089 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 10.18 71.24 0.72 -0.74 15 2 C 0.13 3.49 6.79 42.92 0.29 3.78 15 3 C 0.01 0.40 10.85 85.06 0.92 1.32 15 4 N -0.43 -17.05 9.78 -187.58 -1.83 -18.88 15 5 C -0.05 -2.18 6.63 40.62 0.27 -1.92 15 6 C 0.16 6.34 6.61 40.39 0.27 6.61 15 7 C -0.30 -11.20 10.07 22.42 0.23 -10.97 15 8 C 0.18 7.19 11.06 84.13 0.93 8.12 15 9 N -0.60 -29.08 9.05 -193.26 -1.75 -30.83 15 10 C 0.37 18.21 7.50 134.05 1.01 19.21 15 11 N -0.51 -25.78 5.19 -188.23 -0.98 -26.76 15 12 C -0.30 -16.69 10.18 84.09 0.86 -15.83 15 13 H 0.10 6.17 7.31 -2.91 -0.02 6.15 15 14 C 0.00 0.13 5.50 84.91 0.47 0.59 15 15 N -0.89 -48.92 13.96 21.66 0.30 -48.62 15 16 Si 0.94 38.52 27.74 68.60 1.90 40.42 15 17 H -0.25 -9.93 7.11 99.48 0.71 -9.23 15 18 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 19 H -0.25 -9.75 6.52 99.48 0.65 -9.10 15 20 N -0.48 -16.96 10.41 -176.19 -1.83 -18.79 15 21 H 0.10 1.26 8.14 -2.38 -0.02 1.24 15 22 H 0.11 1.03 8.08 -2.39 -0.02 1.01 15 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.21 3.88 8.06 -2.91 -0.02 3.86 15 25 H 0.15 4.74 8.06 -2.91 -0.02 4.71 15 26 H 0.18 5.49 8.06 -2.91 -0.02 5.47 15 27 H 0.40 18.76 5.16 -92.71 -0.48 18.28 15 28 H 0.29 14.56 8.31 -92.70 -0.77 13.79 15 Total: -1.00 -67.45 251.54 2.44 -65.01 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.66 Total: 28.27 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 5.96 Total: 10.18 kcal Atomic # 7 Polarization: -137.79 SS G_CDS: -6.09 Total: -143.88 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -67.45 2.44 -65.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537134.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.348 kcal (2) G-P(sol) polarization free energy of solvation -67.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds