Wall clock time and date at job start Sun Mar 29 2020 21:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86805 * 119.99748 * 2 1 4 4 H 1.48488 * 109.46968 * 270.00055 * 3 2 1 5 5 H 1.48501 * 109.46745 * 30.00201 * 3 2 1 6 6 H 1.48504 * 109.46938 * 149.99924 * 3 2 1 7 7 C 1.38818 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99742 * 0.02562 * 7 2 1 9 9 N 1.36912 * 119.99532 * 179.97438 * 7 2 1 10 10 C 1.38869 * 119.99735 * 180.02562 * 9 7 2 11 11 C 1.39027 * 119.67715 * 0.28075 * 10 9 7 12 12 C 1.38976 * 119.01006 * 180.29127 * 11 10 9 13 13 N 1.39974 * 120.81265 * 179.71233 * 12 11 10 14 14 C 1.37155 * 126.48333 * 179.72563 * 13 12 11 15 15 C 1.34623 * 106.83094 * 180.02562 * 14 13 12 16 16 N 1.34145 * 108.21003 * 359.97438 * 15 14 13 17 17 C 1.30482 * 109.36838 * 0.02562 * 16 15 14 18 18 C 1.39530 * 118.37554 * 359.44288 * 12 11 10 19 19 C 1.37920 * 119.26374 * 0.27149 * 18 12 11 20 20 N 1.31967 * 120.93326 * 0.02562 * 19 18 12 21 21 H 0.96995 * 120.00221 * 359.97438 * 1 2 3 22 22 H 0.96997 * 120.00798 * 0.02562 * 9 7 2 23 23 H 1.08002 * 120.49485 * 0.02562 * 11 10 9 24 24 H 1.08001 * 126.58161 * 359.76337 * 14 13 12 25 25 H 1.08005 * 125.89616 * 180.02562 * 15 14 13 26 26 H 1.08004 * 125.72597 * 179.97438 * 17 16 15 27 27 H 1.08001 * 120.36750 * 180.29924 * 18 12 11 28 28 H 1.07997 * 119.53559 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4403 0.7001 7 6 2.0098 -1.2022 0.0005 8 1 1.4698 -2.1374 0.0005 9 7 3.3789 -1.2020 0.0000 10 6 4.0733 -2.4047 0.0000 11 6 3.3715 -3.6048 -0.0054 12 6 4.0804 -4.8001 0.0009 13 7 3.4121 -6.0300 0.0018 14 6 3.9917 -7.2731 0.0024 15 6 2.9885 -8.1709 0.0027 16 7 1.8263 -7.5010 0.0028 17 6 2.0662 -6.2184 0.0021 18 6 5.4745 -4.7443 0.0004 19 6 6.1001 -3.5151 -0.0005 20 7 5.3989 -2.3971 -0.0004 21 1 -0.4850 0.8400 0.0004 22 1 3.8639 -0.3621 -0.0004 23 1 2.2915 -3.6081 -0.0100 24 1 5.0497 -7.4900 -0.0013 25 1 3.1002 -9.2452 0.0035 26 1 1.3203 -5.4373 0.0016 27 1 6.0574 -5.6535 0.0003 28 1 7.1789 -3.4668 -0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537645.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:37 Heat of formation + Delta-G solvation = 112.496271 kcal Electronic energy + Delta-G solvation = -14919.335725 eV Core-core repulsion = 12357.842815 eV Total energy + Delta-G solvation = -2561.492910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.99142 -39.30824 -35.77722 -34.11181 -32.32846 -30.07996 -29.49977 -28.66923 -24.99616 -23.63827 -22.22458 -20.76175 -20.27614 -18.75882 -18.00747 -15.84521 -15.58425 -15.17701 -15.07586 -14.64478 -13.96304 -13.76248 -13.50481 -13.34660 -13.15014 -13.03456 -12.41671 -11.66171 -11.25492 -10.98611 -10.78330 -10.38403 -10.22767 -9.92954 -9.08103 -8.82473 -8.60555 -8.21493 -7.43072 -6.73173 -4.06573 1.39182 1.98739 2.77400 2.93957 2.94633 2.97754 3.01319 3.33358 3.82128 4.30087 4.42209 4.88979 4.97276 5.08674 5.10922 5.47980 5.63732 5.67358 5.89946 5.94673 6.13980 6.37376 6.55369 6.79276 6.85822 7.11210 7.27432 7.51903 7.68191 8.21048 8.25552 8.51846 8.94124 9.21506 10.36150 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.032927 B = 0.007249 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.162870 B = 3861.723498 C = 4702.043438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.048 3.952 3 Si 0.884 3.116 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.548 5.548 10 C 0.382 3.618 11 C -0.258 4.258 12 C 0.210 3.790 13 N -0.402 5.402 14 C -0.051 4.051 15 C -0.035 4.035 16 N -0.494 5.494 17 C 0.197 3.803 18 C -0.315 4.315 19 C 0.184 3.816 20 N -0.579 5.579 21 H 0.282 0.718 22 H 0.386 0.614 23 H 0.137 0.863 24 H 0.175 0.825 25 H 0.170 0.830 26 H 0.210 0.790 27 H 0.119 0.881 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.053 -6.747 -0.016 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.159 4.159 3 Si 0.709 3.291 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.156 5.156 10 C 0.139 3.861 11 C -0.287 4.287 12 C 0.110 3.890 13 N -0.079 5.079 14 C -0.182 4.182 15 C -0.181 4.181 16 N -0.212 5.212 17 C -0.085 4.085 18 C -0.343 4.343 19 C 0.019 3.981 20 N -0.300 5.300 21 H 0.092 0.908 22 H 0.222 0.778 23 H 0.155 0.845 24 H 0.192 0.808 25 H 0.187 0.813 26 H 0.226 0.774 27 H 0.137 0.863 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.121 -5.934 -0.016 9.269 hybrid contribution 0.839 0.713 0.013 1.101 sum 7.960 -5.221 -0.003 9.520 Atomic orbital electron populations 1.69660 1.05681 1.28708 1.45297 1.25039 0.95637 0.98705 0.96517 0.86546 0.80065 0.82921 0.79565 1.19054 1.19628 1.18813 1.19443 0.78639 0.96938 1.48922 0.86101 1.41084 1.06121 1.03797 1.64566 1.17726 0.87263 0.85976 0.95106 1.20781 1.00879 0.89635 1.17451 1.17708 0.91726 0.82677 0.96857 1.43227 1.07568 1.05184 1.51966 1.22726 1.00391 0.83419 1.11643 1.22290 0.87955 0.99610 1.08258 1.70315 1.28294 1.02914 1.19646 1.25386 0.83534 0.95449 1.04082 1.20917 0.91673 0.99504 1.22242 1.21869 0.98649 0.86356 0.91193 1.67086 1.06261 1.31644 1.25034 0.90772 0.77794 0.84535 0.80822 0.81274 0.77378 0.86341 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.53 13.96 55.49 0.77 -21.76 15 2 C 0.05 1.20 5.50 -17.45 -0.10 1.10 15 3 Si 0.88 18.40 27.73 -169.99 -4.71 13.69 15 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.26 -5.27 6.52 56.52 0.37 -4.90 15 7 C -0.31 -7.66 10.03 -15.07 -0.15 -7.81 15 8 H 0.12 3.10 5.88 -52.49 -0.31 2.79 15 9 N -0.55 -12.46 5.25 -11.18 -0.06 -12.52 15 10 C 0.38 8.26 7.61 -155.06 -1.18 7.08 15 11 C -0.26 -5.27 8.76 -39.02 -0.34 -5.61 15 12 C 0.21 3.82 6.67 -83.38 -0.56 3.26 15 13 N -0.40 -6.81 2.99 -61.92 -0.18 -6.99 15 14 C -0.05 -0.73 10.89 -16.45 -0.18 -0.91 15 15 C -0.03 -0.51 11.85 -17.82 -0.21 -0.72 15 16 N -0.49 -8.57 11.24 -14.47 -0.16 -8.73 15 17 C 0.20 3.38 11.95 -89.60 -1.07 2.31 15 18 C -0.31 -5.13 9.54 -39.22 -0.37 -5.50 15 19 C 0.18 3.05 11.17 -17.61 -0.20 2.86 15 20 N -0.58 -11.60 10.39 -12.49 -0.13 -11.73 15 21 H 0.28 6.86 8.31 -40.82 -0.34 6.52 15 22 H 0.39 8.42 5.88 -40.82 -0.24 8.18 15 23 H 0.14 2.81 4.78 -52.49 -0.25 2.56 15 24 H 0.17 1.93 7.23 -52.49 -0.38 1.55 15 25 H 0.17 1.90 8.06 -52.48 -0.42 1.48 15 26 H 0.21 3.26 7.14 -52.48 -0.37 2.88 15 27 H 0.12 1.59 6.95 -52.49 -0.36 1.23 15 28 H 0.15 1.86 8.06 -52.49 -0.42 1.44 15 LS Contribution 248.54 15.07 3.75 3.75 Total: -1.00 -27.77 248.54 -7.02 -34.79 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -1.93 Total: 13.44 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -4.36 Total: -3.94 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.24 Total: -61.73 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -4.71 Total: 13.69 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.77 -7.02 -34.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537645.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.290 kcal (2) G-P(sol) polarization free energy of solvation -27.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds