Wall clock time and date at job start Sun Mar 29 2020 21:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86805 * 119.99748 * 2 1 4 4 H 1.48488 * 109.46968 * 270.00055 * 3 2 1 5 5 H 1.48501 * 109.46745 * 30.00201 * 3 2 1 6 6 H 1.48504 * 109.46938 * 149.99924 * 3 2 1 7 7 C 1.38818 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99742 * 0.02562 * 7 2 1 9 9 N 1.36912 * 119.99532 * 179.97438 * 7 2 1 10 10 C 1.38869 * 119.99735 * 180.02562 * 9 7 2 11 11 C 1.39027 * 119.67715 * 0.28075 * 10 9 7 12 12 C 1.38976 * 119.01006 * 180.29127 * 11 10 9 13 13 N 1.39974 * 120.81265 * 179.71233 * 12 11 10 14 14 C 1.37155 * 126.48333 * 179.72563 * 13 12 11 15 15 C 1.34623 * 106.83094 * 180.02562 * 14 13 12 16 16 N 1.34145 * 108.21003 * 359.97438 * 15 14 13 17 17 C 1.30482 * 109.36838 * 0.02562 * 16 15 14 18 18 C 1.39530 * 118.37554 * 359.44288 * 12 11 10 19 19 C 1.37920 * 119.26374 * 0.27149 * 18 12 11 20 20 N 1.31967 * 120.93326 * 0.02562 * 19 18 12 21 21 H 0.96995 * 120.00221 * 359.97438 * 1 2 3 22 22 H 0.96997 * 120.00798 * 0.02562 * 9 7 2 23 23 H 1.08002 * 120.49485 * 0.02562 * 11 10 9 24 24 H 1.08001 * 126.58161 * 359.76337 * 14 13 12 25 25 H 1.08005 * 125.89616 * 180.02562 * 15 14 13 26 26 H 1.08004 * 125.72597 * 179.97438 * 17 16 15 27 27 H 1.08001 * 120.36750 * 180.29924 * 18 12 11 28 28 H 1.07997 * 119.53559 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4403 0.7001 7 6 2.0098 -1.2022 0.0005 8 1 1.4698 -2.1374 0.0005 9 7 3.3789 -1.2020 0.0000 10 6 4.0733 -2.4047 0.0000 11 6 3.3715 -3.6048 -0.0054 12 6 4.0804 -4.8001 0.0009 13 7 3.4121 -6.0300 0.0018 14 6 3.9917 -7.2731 0.0024 15 6 2.9885 -8.1709 0.0027 16 7 1.8263 -7.5010 0.0028 17 6 2.0662 -6.2184 0.0021 18 6 5.4745 -4.7443 0.0004 19 6 6.1001 -3.5151 -0.0005 20 7 5.3989 -2.3971 -0.0004 21 1 -0.4850 0.8400 0.0004 22 1 3.8639 -0.3621 -0.0004 23 1 2.2915 -3.6081 -0.0100 24 1 5.0497 -7.4900 -0.0013 25 1 3.1002 -9.2452 0.0035 26 1 1.3203 -5.4373 0.0016 27 1 6.0574 -5.6535 0.0003 28 1 7.1789 -3.4668 -0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537645.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:36 Heat of formation + Delta-G solvation = 96.571332 kcal Electronic energy + Delta-G solvation = -14920.026282 eV Core-core repulsion = 12357.842815 eV Total energy + Delta-G solvation = -2562.183467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.27153 -40.84108 -37.39411 -35.54793 -34.06982 -31.47911 -30.93546 -30.05274 -26.71601 -25.07369 -23.67133 -22.13796 -21.61821 -20.34256 -19.52864 -17.39670 -17.19282 -16.55481 -16.50140 -16.13998 -15.33334 -15.10211 -15.06091 -14.82874 -14.62675 -14.24772 -14.11278 -13.29107 -12.76663 -12.47839 -12.37140 -11.95846 -11.89100 -11.20813 -10.82109 -10.35169 -9.96293 -9.49301 -9.04127 -8.53740 -5.94453 -0.02199 0.51501 1.27892 1.30379 1.35894 1.46687 1.67730 2.09274 2.12705 2.70630 2.78617 3.27452 3.69658 3.75864 3.86922 4.11447 4.27074 4.42925 4.56794 4.63942 4.82122 4.94542 5.06817 5.32784 5.51625 5.64823 5.79747 5.84770 6.24211 6.50840 6.87663 6.96650 7.20067 7.57316 8.59870 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.032927 B = 0.007249 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.162870 B = 3861.723498 C = 4702.043438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.948 3.052 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.250 1.250 7 C -0.316 4.316 8 H 0.093 0.907 9 N -0.572 5.572 10 C 0.381 3.619 11 C -0.286 4.286 12 C 0.210 3.790 13 N -0.410 5.410 14 C -0.043 4.043 15 C -0.044 4.044 16 N -0.515 5.515 17 C 0.173 3.827 18 C -0.286 4.286 19 C 0.182 3.818 20 N -0.590 5.590 21 H 0.282 0.718 22 H 0.388 0.612 23 H 0.119 0.881 24 H 0.216 0.784 25 H 0.204 0.796 26 H 0.205 0.795 27 H 0.164 0.836 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.840 -8.524 0.005 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.205 4.205 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.445 4.445 8 H 0.110 0.890 9 N -0.185 5.185 10 C 0.141 3.859 11 C -0.315 4.315 12 C 0.110 3.890 13 N -0.089 5.089 14 C -0.172 4.172 15 C -0.189 4.189 16 N -0.232 5.232 17 C -0.108 4.108 18 C -0.312 4.312 19 C 0.020 3.980 20 N -0.312 5.312 21 H 0.092 0.908 22 H 0.224 0.776 23 H 0.137 0.863 24 H 0.233 0.767 25 H 0.221 0.779 26 H 0.221 0.779 27 H 0.181 0.819 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.969 -7.794 0.005 13.456 hybrid contribution -0.065 0.800 0.004 0.802 sum 10.904 -6.994 0.009 12.954 Atomic orbital electron populations 1.69776 1.07254 1.29401 1.48858 1.25743 0.96281 1.01901 0.96540 0.85561 0.79159 0.78581 0.79674 1.18635 1.19540 1.17459 1.19240 0.79808 0.96131 1.49334 0.88962 1.40845 1.05111 1.04249 1.68293 1.18050 0.88169 0.85967 0.93758 1.20798 1.00524 0.90777 1.19378 1.17895 0.92705 0.82516 0.95878 1.43332 1.07531 1.05579 1.52444 1.23450 1.02238 0.81860 1.09690 1.22948 0.87048 1.01324 1.07568 1.70318 1.30021 1.03086 1.19825 1.25443 0.84165 0.95693 1.05516 1.21515 0.90699 1.01338 1.17695 1.22792 1.00777 0.85411 0.89046 1.67189 1.05331 1.33606 1.25078 0.90832 0.77558 0.86312 0.76707 0.77938 0.77878 0.81877 0.78589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.03 13.96 21.65 0.30 -50.73 15 2 C 0.00 -0.16 5.50 84.87 0.47 0.31 15 3 Si 0.95 39.11 27.73 68.60 1.90 41.02 15 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 15 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 6 H -0.25 -9.63 6.52 99.48 0.65 -8.98 15 7 C -0.32 -16.52 10.03 84.04 0.84 -15.68 15 8 H 0.09 5.19 5.88 -2.91 -0.02 5.17 15 9 N -0.57 -26.68 5.25 -189.29 -0.99 -27.67 15 10 C 0.38 16.43 7.61 133.04 1.01 17.44 15 11 C -0.29 -11.79 8.76 22.64 0.20 -11.59 15 12 C 0.21 7.18 6.67 38.33 0.26 7.44 15 13 N -0.41 -13.03 2.99 -349.81 -1.04 -14.07 15 14 C -0.04 -1.05 10.89 83.03 0.90 -0.15 15 15 C -0.04 -1.15 11.85 83.51 0.99 -0.16 15 16 N -0.51 -17.34 11.24 -199.69 -2.25 -19.58 15 17 C 0.17 5.95 11.95 179.99 2.15 8.10 15 18 C -0.29 -7.80 9.54 22.51 0.21 -7.59 15 19 C 0.18 5.15 11.17 84.60 0.94 6.09 15 20 N -0.59 -22.20 10.39 -193.43 -2.01 -24.21 15 21 H 0.28 14.58 8.31 -92.71 -0.77 13.81 15 22 H 0.39 17.06 5.88 -92.71 -0.54 16.52 15 23 H 0.12 5.29 4.78 -2.91 -0.01 5.27 15 24 H 0.22 3.31 7.23 -2.91 -0.02 3.29 15 25 H 0.20 3.71 8.06 -2.91 -0.02 3.69 15 26 H 0.20 6.89 7.14 -2.91 -0.02 6.87 15 27 H 0.16 3.08 6.95 -2.91 -0.02 3.06 15 28 H 0.20 3.61 8.06 -2.91 -0.02 3.59 15 Total: -1.00 -63.26 248.54 4.50 -58.76 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.61 Total: 32.27 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 7.98 Total: 4.21 kcal Atomic # 7 Polarization: -130.27 SS G_CDS: -5.99 Total: -136.26 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.90 Total: 41.02 kcal Total: -63.26 4.50 -58.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537645.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.335 kcal (2) G-P(sol) polarization free energy of solvation -63.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds