Wall clock time and date at job start Sun Mar 29 2020 22:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39066 * 119.10010 * 2 1 4 4 C 1.36964 * 119.86508 * 179.76682 * 3 2 1 5 5 C 1.40074 * 117.99903 * 0.49477 * 4 3 2 6 6 C 1.41689 * 119.33911 * 359.75234 * 5 4 3 7 7 N 1.34083 * 118.42497 * 180.02562 * 6 5 4 8 8 C 1.31289 * 120.58426 * 0.02562 * 7 6 5 9 9 N 1.32191 * 123.08794 * 359.96875 * 8 7 6 10 10 C 1.32843 * 121.34216 * 0.02908 * 9 8 7 11 11 N 1.37760 * 120.93600 * 180.02562 * 10 9 8 12 12 C 1.36810 * 120.00094 * 359.97438 * 11 10 9 13 13 H 1.07999 * 120.00212 * 0.02562 * 12 11 10 14 14 C 1.38956 * 120.00096 * 180.02562 * 12 11 10 15 15 N 1.31446 * 120.00016 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99874 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.46959 * 90.00128 * 16 14 12 18 18 H 1.48497 * 109.47249 * 210.00023 * 16 14 12 19 19 H 1.48497 * 109.46992 * 330.00177 * 16 14 12 20 20 N 1.31380 * 119.09745 * 180.27601 * 2 1 3 21 21 H 1.09001 * 109.46953 * 269.72461 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.72058 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.72689 * 1 2 3 24 24 H 1.08000 * 120.06721 * 0.02562 * 3 2 1 25 25 H 1.07995 * 120.99860 * 180.24621 * 4 3 2 26 26 H 1.08002 * 118.45932 * 180.02562 * 8 7 6 27 27 H 0.97000 * 119.99959 * 179.97438 * 11 10 9 28 28 H 0.97003 * 119.99537 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1834 1.2151 0.0000 4 6 3.5529 1.2334 0.0048 5 6 4.2270 0.0055 -0.0010 6 6 3.4783 -1.1974 -0.0063 7 7 4.1422 -2.3623 -0.0113 8 6 5.4550 -2.3831 -0.0108 9 7 6.1940 -1.2871 -0.0061 10 6 5.6397 -0.0798 -0.0009 11 7 6.4179 1.0568 0.0034 12 6 7.7820 0.9519 0.0029 13 1 8.2487 -0.0220 -0.0013 14 6 8.5670 2.0985 0.0079 15 7 9.8776 1.9977 0.0069 16 14 7.7598 3.7831 0.0144 17 1 7.5455 4.2238 1.4162 18 1 8.6396 4.7563 -0.6814 19 1 6.4527 3.7084 -0.6864 20 7 2.1460 -1.1480 -0.0055 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3634 0.8925 -0.5095 23 1 -0.3633 -0.8875 -0.5181 24 1 1.6299 2.1425 0.0004 25 1 4.0967 2.1665 0.0089 26 1 5.9546 -3.3406 -0.0154 27 1 5.9988 1.9316 0.0068 28 1 10.4256 2.7981 0.0107 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182005.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:05 Heat of formation + Delta-G solvation = 78.482172 kcal Electronic energy + Delta-G solvation = -15096.140259 eV Core-core repulsion = 12533.172387 eV Total energy + Delta-G solvation = -2562.967872 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57995 -37.90860 -36.30530 -33.30844 -32.21362 -31.89016 -30.11018 -27.98944 -25.09802 -24.09326 -22.39800 -21.23534 -19.26473 -18.58660 -16.71885 -16.43619 -15.58204 -15.09312 -14.68509 -14.12677 -13.60089 -13.47442 -13.42953 -13.01835 -12.61534 -12.30706 -12.26393 -11.95634 -11.55117 -11.15931 -11.09394 -10.57405 -10.07752 -9.97373 -9.13275 -9.06473 -8.65718 -7.87027 -7.57482 -7.05698 -4.24651 1.01913 1.43878 2.56680 2.65966 2.76456 2.79584 3.52055 3.67597 3.98345 4.41990 4.51372 4.94297 5.10234 5.19240 5.22271 5.34361 5.59726 5.64575 5.73325 5.78425 6.12687 6.20491 6.36662 6.48543 6.78292 6.87801 7.21078 7.63040 7.88279 8.05227 8.40588 8.62925 8.81922 9.49490 10.01342 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.008343 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.753573 B = 3355.138111 C = 4203.748060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.180 3.820 3 C -0.233 4.233 4 C -0.031 4.031 5 C -0.245 4.245 6 C 0.391 3.609 7 N -0.615 5.615 8 C 0.370 3.630 9 N -0.604 5.604 10 C 0.365 3.635 11 N -0.494 5.494 12 C -0.275 4.275 13 H 0.144 0.856 14 C 0.046 3.954 15 N -0.823 5.823 16 Si 0.879 3.121 17 H -0.258 1.258 18 H -0.262 1.262 19 H -0.263 1.263 20 N -0.499 5.499 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.127 0.873 25 H 0.119 0.881 26 H 0.181 0.819 27 H 0.388 0.612 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.880 3.775 0.059 10.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.029 3.971 3 C -0.256 4.256 4 C -0.059 4.059 5 C -0.257 4.257 6 C 0.145 3.855 7 N -0.346 5.346 8 C 0.076 3.924 9 N -0.337 5.337 10 C 0.111 3.889 11 N -0.097 5.097 12 C -0.407 4.407 13 H 0.162 0.838 14 C -0.166 4.166 15 N -0.455 5.455 16 Si 0.702 3.298 17 H -0.183 1.183 18 H -0.186 1.186 19 H -0.189 1.189 20 N -0.214 5.214 21 H 0.095 0.905 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.145 0.855 25 H 0.137 0.863 26 H 0.197 0.803 27 H 0.225 0.775 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.320 2.337 0.050 9.609 hybrid contribution -0.106 2.963 0.000 2.965 sum -9.426 5.300 0.050 10.814 Atomic orbital electron populations 1.20724 0.89253 1.03111 1.02835 1.21298 0.96547 0.88060 0.91190 1.21244 0.94445 0.98681 1.11240 1.20965 0.94677 0.96246 0.94014 1.19685 0.94798 0.96849 1.14407 1.19110 0.89221 0.87597 0.89587 1.68341 1.09512 1.25922 1.30850 1.24291 0.85848 0.95903 0.86339 1.67899 1.39720 0.96707 1.29331 1.17940 0.85285 0.87610 0.98020 1.41251 1.07056 1.04614 1.56766 1.20092 0.78234 0.98452 1.43943 0.83824 1.25337 0.95581 0.99383 0.96282 1.69615 1.03659 1.31823 1.40367 0.86618 0.80033 0.82997 0.80115 1.18295 1.18614 1.18859 1.67422 1.07712 1.27948 1.18269 0.90529 0.90925 0.90541 0.85515 0.86312 0.80258 0.77454 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.14 36.01 0.37 -0.83 15 2 C 0.18 3.03 6.78 -82.48 -0.56 2.47 15 3 C -0.23 -3.66 9.64 -39.74 -0.38 -4.04 15 4 C -0.03 -0.55 9.63 -39.36 -0.38 -0.93 15 5 C -0.24 -5.27 5.76 -106.64 -0.61 -5.88 15 6 C 0.39 8.85 7.67 -157.82 -1.21 7.64 15 7 N -0.62 -13.99 10.51 -14.28 -0.15 -14.14 15 8 C 0.37 7.88 12.21 -92.24 -1.13 6.75 15 9 N -0.60 -14.12 9.23 -13.56 -0.13 -14.25 15 10 C 0.37 8.37 7.50 -154.92 -1.16 7.21 15 11 N -0.49 -10.96 5.14 -10.75 -0.06 -11.01 15 12 C -0.27 -6.73 10.20 -15.06 -0.15 -6.89 15 13 H 0.14 3.93 7.35 -52.49 -0.39 3.54 15 14 C 0.05 1.08 5.50 -17.45 -0.10 0.99 15 15 N -0.82 -20.43 13.96 55.50 0.77 -19.66 15 16 Si 0.88 16.56 27.74 -169.99 -4.71 11.85 15 17 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 18 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 19 H -0.26 -4.60 6.52 56.52 0.37 -4.23 15 20 N -0.50 -10.37 10.33 -8.84 -0.09 -10.46 15 21 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 22 H 0.07 0.66 8.07 -51.93 -0.42 0.25 15 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.13 1.52 8.06 -52.49 -0.42 1.09 15 25 H 0.12 1.84 6.66 -52.49 -0.35 1.49 15 26 H 0.18 3.08 8.06 -52.49 -0.42 2.66 15 27 H 0.39 7.66 4.05 -40.82 -0.17 7.49 15 28 H 0.29 6.50 8.31 -40.82 -0.34 6.16 15 LS Contribution 249.49 15.07 3.76 3.76 Total: -1.00 -28.91 249.49 -8.10 -37.00 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -2.18 Total: 10.45 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -5.32 Total: 6.47 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: 0.35 Total: -69.52 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -4.71 Total: 11.85 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.91 -8.10 -37.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182005.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.486 kcal (2) G-P(sol) polarization free energy of solvation -28.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds