Wall clock time and date at job start Sun Mar 29 2020 22:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39066 * 119.10010 * 2 1 4 4 C 1.36964 * 119.86508 * 179.76682 * 3 2 1 5 5 C 1.40074 * 117.99903 * 0.49477 * 4 3 2 6 6 C 1.41689 * 119.33911 * 359.75234 * 5 4 3 7 7 N 1.34083 * 118.42497 * 180.02562 * 6 5 4 8 8 C 1.31289 * 120.58426 * 0.02562 * 7 6 5 9 9 N 1.32191 * 123.08794 * 359.96875 * 8 7 6 10 10 C 1.32843 * 121.34216 * 0.02908 * 9 8 7 11 11 N 1.37760 * 120.93600 * 180.02562 * 10 9 8 12 12 C 1.36810 * 120.00094 * 359.97438 * 11 10 9 13 13 H 1.07999 * 120.00212 * 0.02562 * 12 11 10 14 14 C 1.38956 * 120.00096 * 180.02562 * 12 11 10 15 15 N 1.31446 * 120.00016 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99874 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.46959 * 90.00128 * 16 14 12 18 18 H 1.48497 * 109.47249 * 210.00023 * 16 14 12 19 19 H 1.48497 * 109.46992 * 330.00177 * 16 14 12 20 20 N 1.31380 * 119.09745 * 180.27601 * 2 1 3 21 21 H 1.09001 * 109.46953 * 269.72461 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.72058 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.72689 * 1 2 3 24 24 H 1.08000 * 120.06721 * 0.02562 * 3 2 1 25 25 H 1.07995 * 120.99860 * 180.24621 * 4 3 2 26 26 H 1.08002 * 118.45932 * 180.02562 * 8 7 6 27 27 H 0.97000 * 119.99959 * 179.97438 * 11 10 9 28 28 H 0.97003 * 119.99537 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1834 1.2151 0.0000 4 6 3.5529 1.2334 0.0048 5 6 4.2270 0.0055 -0.0010 6 6 3.4783 -1.1974 -0.0063 7 7 4.1422 -2.3623 -0.0113 8 6 5.4550 -2.3831 -0.0108 9 7 6.1940 -1.2871 -0.0061 10 6 5.6397 -0.0798 -0.0009 11 7 6.4179 1.0568 0.0034 12 6 7.7820 0.9519 0.0029 13 1 8.2487 -0.0220 -0.0013 14 6 8.5670 2.0985 0.0079 15 7 9.8776 1.9977 0.0069 16 14 7.7598 3.7831 0.0144 17 1 7.5455 4.2238 1.4162 18 1 8.6396 4.7563 -0.6814 19 1 6.4527 3.7084 -0.6864 20 7 2.1460 -1.1480 -0.0055 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3634 0.8925 -0.5095 23 1 -0.3633 -0.8875 -0.5181 24 1 1.6299 2.1425 0.0004 25 1 4.0967 2.1665 0.0089 26 1 5.9546 -3.3406 -0.0154 27 1 5.9988 1.9316 0.0068 28 1 10.4256 2.7981 0.0107 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182005.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:04 Heat of formation + Delta-G solvation = 60.593292 kcal Electronic energy + Delta-G solvation = -15096.915979 eV Core-core repulsion = 12533.172387 eV Total energy + Delta-G solvation = -2563.743592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.18273 -39.46720 -37.96993 -34.95996 -33.65023 -33.48130 -31.71219 -29.34860 -26.76579 -25.65708 -23.87804 -22.82054 -20.95190 -20.14626 -18.34575 -17.99198 -17.12621 -16.67793 -16.28334 -15.51437 -15.17733 -15.00114 -14.80787 -14.49091 -14.18082 -13.73818 -13.51055 -12.96087 -12.93856 -12.68889 -12.60595 -12.13523 -11.72764 -11.54283 -10.74732 -10.62705 -10.20429 -9.57589 -9.22081 -8.73217 -6.09066 -0.47617 -0.10160 1.01550 1.18888 1.30922 1.32233 2.00135 2.16679 2.35483 2.81337 2.98377 3.43795 3.52745 3.69092 3.82045 3.89113 4.24967 4.35010 4.60279 4.72870 4.87288 5.00218 5.09347 5.12990 5.21783 5.41730 5.68898 5.94763 6.16521 6.34369 6.79811 6.85522 7.22154 7.79690 8.39073 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.008343 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.753573 B = 3355.138111 C = 4203.748060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.180 3.820 3 C -0.206 4.206 4 C -0.033 4.033 5 C -0.272 4.272 6 C 0.359 3.641 7 N -0.627 5.627 8 C 0.365 3.635 9 N -0.637 5.637 10 C 0.377 3.623 11 N -0.501 5.501 12 C -0.307 4.307 13 H 0.095 0.905 14 C 0.002 3.998 15 N -0.883 5.883 16 Si 0.946 3.054 17 H -0.249 1.249 18 H -0.260 1.260 19 H -0.237 1.237 20 N -0.525 5.525 21 H 0.097 0.903 22 H 0.110 0.890 23 H 0.073 0.927 24 H 0.182 0.818 25 H 0.147 0.853 26 H 0.212 0.788 27 H 0.400 0.600 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.016 6.074 0.043 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.028 3.972 3 C -0.228 4.228 4 C -0.061 4.061 5 C -0.285 4.285 6 C 0.113 3.887 7 N -0.357 5.357 8 C 0.072 3.928 9 N -0.370 5.370 10 C 0.122 3.878 11 N -0.109 5.109 12 C -0.439 4.439 13 H 0.113 0.887 14 C -0.204 4.204 15 N -0.517 5.517 16 Si 0.765 3.235 17 H -0.173 1.173 18 H -0.184 1.184 19 H -0.160 1.160 20 N -0.240 5.240 21 H 0.115 0.885 22 H 0.129 0.871 23 H 0.092 0.908 24 H 0.199 0.801 25 H 0.165 0.835 26 H 0.228 0.772 27 H 0.239 0.761 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.510 4.597 0.033 14.271 hybrid contribution 0.693 2.017 0.010 2.132 sum -12.818 6.614 0.043 14.423 Atomic orbital electron populations 1.20919 0.85247 1.04919 1.04583 1.22343 0.99092 0.87484 0.88233 1.21889 0.93677 1.00409 1.06780 1.21400 0.95957 0.95831 0.92887 1.19790 0.93928 0.98338 1.16414 1.19419 0.90312 0.87945 0.90978 1.68350 1.10024 1.27018 1.30304 1.24896 0.85727 0.96668 0.85519 1.67974 1.40921 0.97746 1.30388 1.18405 0.86417 0.87766 0.95222 1.40932 1.05894 1.04775 1.59272 1.19582 0.79512 0.97194 1.47610 0.88673 1.26139 0.95814 1.03341 0.95099 1.69732 1.05383 1.33117 1.43465 0.85606 0.80073 0.77085 0.80743 1.17329 1.18399 1.16015 1.67518 1.06851 1.30401 1.19221 0.88508 0.87126 0.90840 0.80104 0.83540 0.77206 0.76057 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 10.14 71.24 0.72 -1.05 15 2 C 0.18 5.20 6.78 42.83 0.29 5.49 15 3 C -0.21 -5.24 9.64 22.17 0.21 -5.03 15 4 C -0.03 -1.05 9.63 22.42 0.22 -0.83 15 5 C -0.27 -11.36 5.76 -21.17 -0.12 -11.48 15 6 C 0.36 15.87 7.67 135.02 1.04 16.91 15 7 N -0.63 -28.61 10.51 -199.08 -2.09 -30.70 15 8 C 0.37 15.86 12.21 180.92 2.21 18.07 15 9 N -0.64 -30.90 9.23 -196.81 -1.82 -32.71 15 10 C 0.38 17.48 7.50 133.94 1.00 18.48 15 11 N -0.50 -22.48 5.14 -187.92 -0.97 -23.45 15 12 C -0.31 -15.92 10.20 84.09 0.86 -15.06 15 13 H 0.10 5.70 7.35 -2.91 -0.02 5.68 15 14 C 0.00 0.11 5.50 84.92 0.47 0.58 15 15 N -0.88 -46.50 13.96 21.67 0.30 -46.19 15 16 Si 0.95 33.62 27.74 68.60 1.90 35.52 15 17 H -0.25 -8.42 7.11 99.48 0.71 -7.72 15 18 H -0.26 -9.04 7.11 99.48 0.71 -8.33 15 19 H -0.24 -7.21 6.52 99.48 0.65 -6.57 15 20 N -0.52 -20.63 10.33 -181.88 -1.88 -22.51 15 21 H 0.10 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.11 1.20 8.07 -2.39 -0.02 1.18 15 23 H 0.07 1.41 8.14 -2.39 -0.02 1.39 15 24 H 0.18 2.74 8.06 -2.91 -0.02 2.72 15 25 H 0.15 3.82 6.66 -2.91 -0.02 3.80 15 26 H 0.21 7.34 8.06 -2.91 -0.02 7.32 15 27 H 0.40 15.19 4.05 -92.71 -0.38 14.82 15 28 H 0.29 13.90 8.31 -92.71 -0.77 13.13 15 Total: -1.00 -68.24 249.49 3.12 -65.12 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.77 Total: 28.83 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: 6.89 Total: 26.09 kcal Atomic # 7 Polarization: -149.11 SS G_CDS: -6.45 Total: -155.56 kcal Atomic # 14 Polarization: 33.62 SS G_CDS: 1.90 Total: 35.52 kcal Total: -68.24 3.12 -65.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182005.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.712 kcal (2) G-P(sol) polarization free energy of solvation -68.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds