Wall clock time and date at job start Sun Mar 29 2020 22:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31279 * 118.57214 * 2 1 4 4 C 1.33920 * 120.46511 * 179.97438 * 3 2 1 5 5 C 1.40557 * 122.08759 * 179.97438 * 4 3 2 6 6 C 1.36698 * 118.06531 * 180.02562 * 5 4 3 7 7 C 1.39313 * 119.96273 * 0.02562 * 6 5 4 8 8 N 1.31254 * 121.66461 * 359.97438 * 7 6 5 9 9 C 1.33057 * 121.18523 * 0.02562 * 8 7 6 10 10 C 1.41912 * 121.92616 * 179.97438 * 9 8 7 11 11 N 1.37833 * 120.87509 * 0.02562 * 10 9 8 12 12 C 1.36766 * 120.00064 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00159 * 359.97438 * 12 11 10 14 14 C 1.38963 * 120.00097 * 179.97438 * 12 11 10 15 15 N 1.31449 * 119.99753 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00150 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47017 * 60.00569 * 16 14 12 18 18 H 1.48496 * 109.47004 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47254 * 300.00388 * 16 14 12 20 20 N 1.32253 * 118.56569 * 179.97438 * 2 1 3 21 21 H 1.09006 * 109.47003 * 89.99677 * 1 2 3 22 22 H 1.08994 * 109.47509 * 210.00235 * 1 2 3 23 23 H 1.08999 * 109.46723 * 330.00319 * 1 2 3 24 24 H 1.08007 * 120.96957 * 359.97438 * 5 4 3 25 25 H 1.07994 * 120.02502 * 179.97438 * 6 5 4 26 26 H 1.08000 * 119.17003 * 180.02562 * 7 6 5 27 27 H 0.97008 * 120.00172 * 0.02562 * 11 10 9 28 28 H 0.97007 * 120.00031 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1349 1.1529 0.0000 4 6 3.4733 1.1971 0.0005 5 6 4.1803 2.4120 0.0000 6 6 5.5463 2.3612 0.0001 7 6 6.1967 1.1293 0.0001 8 7 5.5305 -0.0016 0.0005 9 6 4.2001 -0.0175 0.0005 10 6 3.4640 -1.2308 0.0005 11 7 4.1086 -2.4491 0.0010 12 6 3.3815 -3.6075 0.0004 13 1 2.3023 -3.5676 -0.0001 14 6 4.0313 -4.8358 0.0004 15 7 5.3449 -4.8843 0.0014 16 14 3.0382 -6.4180 0.0003 17 1 2.1823 -6.4650 -1.2123 18 1 3.9609 -7.5815 0.0009 19 1 2.1820 -6.4651 1.2127 20 7 2.1394 -1.1615 0.0005 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 3.6593 3.3582 -0.0013 25 1 6.1210 3.2755 -0.0008 26 1 7.2764 1.1041 0.0005 27 1 5.0780 -2.4850 0.0017 28 1 5.7986 -5.7418 0.0018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182412.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:34 Heat of formation + Delta-G solvation = 48.508672 kcal Electronic energy + Delta-G solvation = -15133.176593 eV Core-core repulsion = 12568.908973 eV Total energy + Delta-G solvation = -2564.267621 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.03257 -39.17019 -37.95188 -34.92573 -33.54134 -32.67846 -31.77478 -29.05831 -27.40012 -25.09914 -24.10181 -22.83380 -20.58039 -19.42550 -18.47150 -18.28129 -16.95502 -16.45484 -16.27336 -15.91741 -15.15333 -14.46951 -14.39472 -13.90657 -13.90203 -13.67970 -13.47577 -13.01813 -12.85686 -12.71121 -12.53417 -12.15669 -11.92315 -11.46753 -10.67613 -10.57631 -10.20065 -9.47187 -8.97294 -8.83666 -6.02971 -0.32655 -0.00525 1.11828 1.38189 1.51812 1.52771 2.12007 2.28307 2.73065 2.83679 3.42802 3.47375 3.49216 3.68834 4.05890 4.19074 4.28387 4.54517 4.75224 4.87327 4.92981 5.06196 5.12765 5.18384 5.23133 5.43515 5.64796 6.03933 6.32061 6.53939 6.90344 7.11025 7.18312 7.85933 8.29568 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.008592 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.005863 B = 3258.127454 C = 4230.989027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.353 3.647 3 N -0.626 5.626 4 C 0.138 3.862 5 C -0.108 4.108 6 C -0.111 4.111 7 C 0.051 3.949 8 N -0.477 5.477 9 C -0.045 4.045 10 C 0.344 3.656 11 N -0.465 5.465 12 C -0.310 4.310 13 H 0.118 0.882 14 C -0.010 4.010 15 N -0.887 5.887 16 Si 1.017 2.983 17 H -0.260 1.260 18 H -0.268 1.268 19 H -0.260 1.260 20 N -0.631 5.631 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.161 0.839 25 H 0.185 0.815 26 H 0.186 0.814 27 H 0.413 0.587 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 7.464 -0.021 7.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.082 3.918 3 N -0.357 5.357 4 C 0.010 3.990 5 C -0.136 4.136 6 C -0.133 4.133 7 C -0.119 4.119 8 N -0.187 5.187 9 C -0.181 4.181 10 C 0.088 3.912 11 N -0.065 5.065 12 C -0.443 4.443 13 H 0.136 0.864 14 C -0.216 4.216 15 N -0.521 5.521 16 Si 0.837 3.163 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.185 1.185 20 N -0.366 5.366 21 H 0.110 0.890 22 H 0.101 0.899 23 H 0.112 0.888 24 H 0.178 0.822 25 H 0.203 0.797 26 H 0.203 0.797 27 H 0.250 0.750 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.676 6.193 -0.019 6.416 hybrid contribution 0.858 -0.137 -0.015 0.869 sum -0.818 6.056 -0.033 6.111 Atomic orbital electron populations 1.20504 0.84166 1.03996 1.04061 1.23460 0.98900 0.82862 0.86568 1.68547 1.06958 1.28634 1.31525 1.19899 0.91378 0.93713 0.93960 1.21275 0.94521 0.96257 1.01587 1.22282 0.94221 1.00443 0.96329 1.23324 1.01493 0.87326 0.99767 1.67471 1.07102 1.33237 1.10934 1.19765 0.91615 0.94468 1.12260 1.18509 0.89115 0.84811 0.98755 1.41041 1.09412 1.02513 1.53581 1.20502 0.94231 0.82793 1.46740 0.86433 1.26712 0.97094 1.03559 0.94236 1.69725 1.09172 1.30194 1.42991 0.84621 0.77550 0.74115 0.79991 1.18467 1.19207 1.18473 1.67627 1.06911 1.30145 1.31966 0.89046 0.89927 0.88772 0.82159 0.79732 0.79722 0.74988 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.21 10.29 71.24 0.73 -1.47 15 2 C 0.35 15.63 7.63 138.77 1.06 16.69 15 3 N -0.63 -27.65 10.32 -181.68 -1.88 -29.52 15 4 C 0.14 6.06 6.62 40.21 0.27 6.33 15 5 C -0.11 -3.57 10.14 22.48 0.23 -3.34 15 6 C -0.11 -2.99 10.03 22.17 0.22 -2.77 15 7 C 0.05 1.67 11.15 85.04 0.95 2.61 15 8 N -0.48 -20.93 9.73 -187.99 -1.83 -22.76 15 9 C -0.05 -2.19 6.65 40.68 0.27 -1.92 15 10 C 0.34 18.13 7.53 134.08 1.01 19.14 15 11 N -0.46 -25.12 5.38 -187.72 -1.01 -26.13 15 12 C -0.31 -16.51 9.71 84.10 0.82 -15.69 15 13 H 0.12 6.28 7.12 -2.91 -0.02 6.26 15 14 C -0.01 -0.49 5.50 84.92 0.47 -0.02 15 15 N -0.89 -45.65 13.05 21.67 0.28 -45.36 15 16 Si 1.02 38.52 29.55 68.60 2.03 40.55 15 17 H -0.26 -9.59 7.11 99.48 0.71 -8.89 15 18 H -0.27 -9.58 7.11 99.48 0.71 -8.88 15 19 H -0.26 -9.60 7.11 99.48 0.71 -8.89 15 20 N -0.63 -31.85 9.09 -184.38 -1.68 -33.53 15 21 H 0.09 2.60 8.14 -2.38 -0.02 2.58 15 22 H 0.08 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.09 2.60 8.14 -2.39 -0.02 2.58 15 24 H 0.16 4.34 8.06 -2.91 -0.02 4.32 15 25 H 0.19 2.91 8.06 -2.91 -0.02 2.88 15 26 H 0.19 4.42 8.06 -2.91 -0.02 4.40 15 27 H 0.41 22.69 7.37 -92.70 -0.68 22.01 15 28 H 0.29 13.81 8.31 -92.70 -0.77 13.04 15 Total: -1.00 -65.75 255.08 2.46 -63.29 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.52 Total: 33.91 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 6.02 Total: 19.55 kcal Atomic # 7 Polarization: -151.19 SS G_CDS: -6.11 Total: -157.30 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -65.75 2.46 -63.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182412.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.798 kcal (2) G-P(sol) polarization free energy of solvation -65.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds