Wall clock time and date at job start Sun Mar 29 2020 21:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31591 * 1 3 3 Si 1.86802 * 119.99700 * 2 1 4 4 H 1.48496 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47392 * 300.00324 * 3 2 1 6 6 H 1.48498 * 109.47245 * 60.00404 * 3 2 1 7 7 C 1.38782 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00421 * 180.02562 * 7 2 1 9 9 N 1.36873 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.38922 * 120.00180 * 180.02562 * 9 7 2 11 11 N 1.32436 * 119.74291 * 359.97438 * 10 9 7 12 12 C 1.31902 * 121.67463 * 180.02562 * 11 10 9 13 13 C 1.38165 * 120.98050 * 0.02562 * 12 11 10 14 14 C 1.38789 * 119.38592 * 0.25567 * 13 12 11 15 15 C 1.38789 * 118.46032 * 359.52265 * 14 13 12 16 16 O 1.35943 * 120.50946 * 180.22558 * 15 14 13 17 17 C 1.42904 * 116.99887 * 0.23150 * 16 15 14 18 18 F 1.39904 * 109.46993 * 300.00352 * 17 16 15 19 19 F 1.39894 * 109.46973 * 60.00030 * 17 16 15 20 20 H 0.97000 * 120.00188 * 359.97438 * 1 2 3 21 21 H 0.96999 * 119.99761 * 359.97438 * 9 7 2 22 22 H 1.08011 * 119.51153 * 180.02562 * 12 11 10 23 23 H 1.08002 * 120.30461 * 179.97438 * 13 12 11 24 24 H 1.07998 * 120.77126 * 179.72327 * 14 13 12 25 25 H 1.09003 * 109.46969 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8910 2.3966 -1.2124 6 1 1.8911 2.3965 1.2125 7 6 2.0099 -1.2019 -0.0005 8 1 3.0898 -1.2019 -0.0001 9 7 1.3255 -2.3872 -0.0005 10 6 2.0201 -3.5903 -0.0005 11 7 3.3445 -3.5844 -0.0011 12 6 4.0421 -4.7038 -0.0016 13 6 3.4130 -5.9339 -0.0021 14 6 2.0262 -5.9896 -0.0075 15 6 1.3164 -4.7969 -0.0021 16 8 -0.0430 -4.8029 -0.0024 17 6 -0.6862 -6.0790 -0.0035 18 9 -0.3068 -6.7915 -1.1462 19 9 -0.3075 -6.7930 1.1384 20 1 -0.4850 0.8400 0.0004 21 1 0.3556 -2.3872 0.0002 22 1 5.1213 -4.6582 -0.0016 23 1 3.9950 -6.8437 -0.0030 24 1 1.5114 -6.9389 -0.0126 25 1 -1.7674 -5.9409 -0.0041 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182505.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:35 Heat of formation + Delta-G solvation = -124.463569 kcal Electronic energy + Delta-G solvation = -15843.501985 eV Core-core repulsion = 12685.211444 eV Total energy + Delta-G solvation = -3158.290541 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.20924 -48.21793 -41.18656 -38.74401 -37.02596 -33.84796 -32.37931 -30.19610 -27.04311 -26.70072 -23.77495 -23.34428 -20.10267 -19.58781 -19.25651 -18.79935 -18.19089 -16.97890 -16.42640 -16.20969 -15.79286 -15.62631 -15.07690 -15.00090 -14.59743 -14.32755 -13.90122 -13.80802 -13.48744 -13.07190 -13.02903 -12.67283 -12.32989 -12.13377 -12.04283 -10.72349 -10.20015 -10.12807 -8.63334 -8.47725 -5.72454 0.54233 0.64807 1.43089 1.48265 1.58418 1.84313 2.28707 2.60759 2.88425 3.06867 3.37240 3.60832 3.80732 3.91570 4.13879 4.30014 4.57741 4.80523 5.18268 5.40863 5.42409 5.63743 5.76618 6.27235 6.77201 7.15555 7.40582 7.85236 8.70301 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.034024 B = 0.008110 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.749816 B = 3451.853061 C = 4100.113672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.032 4.032 3 Si 1.003 2.997 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.552 5.552 10 C 0.347 3.653 11 N -0.561 5.561 12 C 0.131 3.869 13 C -0.260 4.260 14 C -0.097 4.097 15 C -0.070 4.070 16 O -0.339 6.339 17 C 0.407 3.593 18 F -0.211 7.211 19 F -0.211 7.211 20 H 0.276 0.724 21 H 0.404 0.596 22 H 0.178 0.822 23 H 0.157 0.843 24 H 0.143 0.857 25 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 -10.772 -0.008 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.230 4.230 3 Si 0.826 3.174 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.433 4.433 8 H 0.121 0.879 9 N -0.162 5.162 10 C 0.105 3.895 11 N -0.284 5.284 12 C -0.029 4.029 13 C -0.286 4.286 14 C -0.122 4.122 15 C -0.122 4.122 16 O -0.256 6.256 17 C 0.317 3.683 18 F -0.193 7.193 19 F -0.193 7.193 20 H 0.085 0.915 21 H 0.239 0.761 22 H 0.195 0.805 23 H 0.175 0.825 24 H 0.160 0.840 25 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.076 -9.409 -0.009 9.409 hybrid contribution -0.625 -0.334 0.000 0.709 sum -0.549 -9.743 -0.010 9.758 Atomic orbital electron populations 1.69798 1.07248 1.29214 1.50566 1.26244 0.96630 1.02971 0.97191 0.84699 0.78351 0.76389 0.77917 1.18651 1.20091 1.20080 1.20075 0.93556 0.83018 1.46687 0.87894 1.40853 1.07823 1.01957 1.65550 1.18110 0.88684 0.84537 0.98219 1.67336 1.04610 1.32482 1.23947 1.22863 1.00593 0.86918 0.92542 1.21606 0.93477 0.99671 1.13803 1.21645 0.96247 0.95447 0.98904 1.19037 0.81818 0.94510 1.16822 1.86497 1.18200 1.30954 1.89969 1.24104 0.98918 0.74255 0.71005 1.93044 1.93734 1.79783 1.52720 1.93042 1.93752 1.79707 1.52770 0.91452 0.76099 0.80462 0.82537 0.83984 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.97 13.05 21.64 0.28 -51.69 15 2 C -0.03 -1.70 5.50 84.86 0.47 -1.24 15 3 Si 1.00 42.82 29.55 68.60 2.03 44.85 15 4 H -0.26 -10.90 7.11 99.48 0.71 -10.20 15 5 H -0.28 -11.39 7.11 99.48 0.71 -10.68 15 6 H -0.28 -11.38 7.11 99.48 0.71 -10.68 15 7 C -0.30 -17.01 9.70 84.04 0.82 -16.20 15 8 H 0.10 5.83 7.08 -2.91 -0.02 5.81 15 9 N -0.55 -30.00 5.41 -188.87 -1.02 -31.02 15 10 C 0.35 17.22 7.45 133.21 0.99 18.21 15 11 N -0.56 -26.40 9.09 -192.79 -1.75 -28.15 15 12 C 0.13 4.83 11.17 84.66 0.95 5.77 15 13 C -0.26 -8.62 10.10 22.38 0.23 -8.40 15 14 C -0.10 -3.53 8.35 22.53 0.19 -3.35 15 15 C -0.07 -3.02 6.52 22.75 0.15 -2.87 15 16 O -0.34 -13.02 9.68 -92.91 -0.90 -13.92 15 17 C 0.41 10.87 5.98 113.37 0.68 11.55 15 18 F -0.21 -5.97 15.60 44.97 0.70 -5.27 15 19 F -0.21 -5.98 15.63 44.97 0.70 -5.27 15 20 H 0.28 14.42 8.31 -92.71 -0.77 13.65 15 21 H 0.40 22.28 7.23 -92.71 -0.67 21.61 15 22 H 0.18 5.01 8.06 -2.90 -0.02 4.99 15 23 H 0.16 3.89 8.06 -2.91 -0.02 3.87 15 24 H 0.14 4.56 5.26 -2.91 -0.02 4.55 15 25 H 0.23 3.43 8.14 -2.39 -0.02 3.41 15 Total: -1.00 -65.76 236.25 5.08 -60.68 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.58 Total: 26.32 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 4.46 Total: 3.48 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -2.49 Total: -110.86 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.90 Total: -13.92 kcal Atomic # 9 Polarization: -11.95 SS G_CDS: 1.40 Total: -10.54 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -65.76 5.08 -60.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182505.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.784 kcal (2) G-P(sol) polarization free energy of solvation -65.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds