Wall clock time and date at job start Sun Mar 29 2020 21:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35529 * 117.00331 * 2 1 4 4 N 1.32713 * 120.75174 * 359.97438 * 3 2 1 5 5 C 1.32307 * 119.48719 * 180.02562 * 4 3 2 6 6 Cl 1.73599 * 119.44203 * 179.97438 * 5 4 3 7 7 N 1.31971 * 121.10885 * 0.26552 * 5 4 3 8 8 N 1.28708 * 121.63202 * 359.45902 * 7 5 4 9 9 C 1.32588 * 120.37799 * 0.53471 * 8 7 5 10 10 N 1.38957 * 120.54932 * 179.75943 * 9 8 7 11 11 C 1.36837 * 120.00166 * 359.97438 * 10 9 8 12 12 H 1.08001 * 120.00274 * 0.02562 * 11 10 9 13 13 C 1.38807 * 120.00055 * 179.97438 * 11 10 9 14 14 N 1.31579 * 119.99719 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00024 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47143 * 60.00156 * 15 13 11 17 17 H 1.48503 * 109.47226 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47104 * 300.00303 * 15 13 11 19 19 H 1.08999 * 109.47610 * 300.00468 * 1 2 3 20 20 H 1.09002 * 109.46947 * 59.99946 * 1 2 3 21 21 H 1.09001 * 109.47565 * 180.02562 * 1 2 3 22 22 H 0.97002 * 120.00014 * 179.97438 * 10 9 8 23 23 H 0.97007 * 119.99386 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3363 2.3300 -0.0005 5 6 1.9629 3.4953 -0.0010 6 17 1.0355 4.9628 -0.0024 7 7 3.2809 3.5607 -0.0063 8 7 4.0095 2.4997 -0.0007 9 6 3.4460 1.2994 -0.0002 10 7 4.2292 0.1516 0.0008 11 6 5.5937 0.2542 0.0006 12 1 6.0621 1.2274 0.0001 13 6 6.3760 -0.8924 0.0021 14 7 5.8054 -2.0780 0.0031 15 14 8.2387 -0.7523 0.0025 16 1 8.6794 -0.0158 1.2145 17 1 8.8373 -2.1113 0.0035 18 1 8.6802 -0.0183 -1.2106 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 3.8086 -0.7225 0.0016 23 1 6.3521 -2.8794 0.0038 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182668.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:21 Heat of formation + Delta-G solvation = 30.539211 kcal Electronic energy + Delta-G solvation = -13600.011500 eV Core-core repulsion = 10896.698721 eV Total energy + Delta-G solvation = -2703.312779 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.031 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.63768 -38.04723 -36.39027 -35.82069 -33.20990 -32.54774 -29.43384 -27.41912 -25.58505 -23.61295 -22.83056 -19.13450 -18.19777 -17.14634 -16.98543 -15.89779 -15.14504 -14.80615 -14.23864 -14.12868 -13.93083 -12.33699 -12.14964 -11.86381 -11.46591 -11.32365 -11.30754 -10.91797 -10.81407 -10.63982 -10.58780 -10.52849 -9.83525 -9.18619 -8.43816 -7.46166 -7.06225 -4.14013 1.68004 1.76377 2.31454 2.99998 3.02832 3.03620 3.34431 3.73417 4.27386 4.41098 4.81937 4.84124 5.29372 5.54131 5.54579 5.79859 6.05928 6.29951 6.97418 7.16330 7.50172 7.79503 8.24277 8.69575 8.87278 9.76146 10.05563 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.034839 B = 0.007764 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.510695 B = 3605.597168 C = 4393.963183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.305 6.305 3 C 0.284 3.716 4 N -0.500 5.500 5 C 0.165 3.835 6 Cl -0.018 7.018 7 N -0.216 5.216 8 N -0.277 5.277 9 C 0.217 3.783 10 N -0.464 5.464 11 C -0.276 4.276 12 H 0.126 0.874 13 C 0.027 3.973 14 N -0.858 5.858 15 Si 0.949 3.051 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.264 1.264 19 H 0.057 0.943 20 H 0.057 0.943 21 H 0.094 0.906 22 H 0.418 0.582 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.477 1.396 0.003 5.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.207 6.207 3 C 0.071 3.929 4 N -0.237 5.237 5 C -0.130 4.130 6 Cl 0.008 6.992 7 N -0.069 5.069 8 N -0.147 5.147 9 C -0.034 4.034 10 N -0.069 5.069 11 C -0.410 4.410 12 H 0.144 0.856 13 C -0.183 4.183 14 N -0.492 5.492 15 Si 0.773 3.227 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.189 1.189 19 H 0.075 0.925 20 H 0.075 0.925 21 H 0.112 0.888 22 H 0.256 0.744 23 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.764 1.800 -0.001 5.093 hybrid contribution -0.347 -1.035 0.002 1.092 sum -5.111 0.765 0.001 5.168 Atomic orbital electron populations 1.22810 0.77668 1.02573 1.02300 1.86190 1.22584 1.23763 1.88169 1.20038 0.88458 0.85008 0.99421 1.67392 1.40438 0.97399 1.18488 1.22871 0.87861 0.86323 1.15967 1.98302 1.72259 1.31058 1.97548 1.72754 1.03366 1.22898 1.07880 1.73704 1.24244 0.92034 1.24671 1.19678 0.85506 0.91321 1.06930 1.40970 1.06199 1.04312 1.55456 1.20313 0.79874 0.96232 1.44565 0.85646 1.25721 1.02913 0.94183 0.95443 1.69687 1.38551 0.98329 1.42603 0.85593 0.78985 0.78039 0.80071 1.18855 1.20302 1.18859 0.92477 0.92474 0.88809 0.74440 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.42 101.05 1.05 1.66 14 2 O -0.31 -5.82 9.84 -18.28 -0.18 -6.00 14 3 C 0.28 6.17 7.56 -16.33 -0.12 6.05 14 4 N -0.50 -10.66 9.48 -11.33 -0.11 -10.77 14 5 C 0.17 3.59 8.25 -91.56 -0.76 2.83 14 6 Cl -0.02 -0.33 29.28 -51.86 -1.52 -1.84 14 7 N -0.22 -5.07 11.52 31.69 0.36 -4.70 14 8 N -0.28 -6.83 10.43 31.44 0.33 -6.50 14 9 C 0.22 5.15 7.55 -154.40 -1.17 3.98 14 10 N -0.46 -11.12 5.42 -10.81 -0.06 -11.18 14 11 C -0.28 -6.76 9.72 -15.11 -0.15 -6.91 14 12 H 0.13 3.10 7.12 -52.49 -0.37 2.73 14 13 C 0.03 0.62 5.50 -17.45 -0.10 0.52 14 14 N -0.86 -20.56 13.05 55.49 0.72 -19.83 14 15 Si 0.95 18.22 29.55 -169.99 -5.02 13.19 14 16 H -0.26 -5.05 7.11 56.52 0.40 -4.64 14 17 H -0.28 -5.21 7.11 56.52 0.40 -4.81 14 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 14 19 H 0.06 0.80 8.12 -51.93 -0.42 0.38 14 20 H 0.06 0.80 8.12 -51.93 -0.42 0.38 14 21 H 0.09 1.03 8.14 -51.93 -0.42 0.61 14 22 H 0.42 9.83 7.34 -40.82 -0.30 9.53 14 23 H 0.29 6.40 8.31 -40.82 -0.34 6.06 14 LS Contribution 236.06 15.07 3.56 3.56 Total: -1.00 -26.13 236.06 -4.22 -30.35 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -1.07 Total: 5.59 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.23 Total: 8.13 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 1.25 Total: -52.99 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.18 Total: -6.00 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.19 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.52 Total: -1.84 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -26.13 -4.22 -30.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182668.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.890 kcal (2) G-P(sol) polarization free energy of solvation -26.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds