Wall clock time and date at job start Sun Mar 29 2020 21:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35529 * 117.00331 * 2 1 4 4 N 1.32713 * 120.75174 * 359.97438 * 3 2 1 5 5 C 1.32307 * 119.48719 * 180.02562 * 4 3 2 6 6 Cl 1.73599 * 119.44203 * 179.97438 * 5 4 3 7 7 N 1.31971 * 121.10885 * 0.26552 * 5 4 3 8 8 N 1.28708 * 121.63202 * 359.45902 * 7 5 4 9 9 C 1.32588 * 120.37799 * 0.53471 * 8 7 5 10 10 N 1.38957 * 120.54932 * 179.75943 * 9 8 7 11 11 C 1.36837 * 120.00166 * 359.97438 * 10 9 8 12 12 H 1.08001 * 120.00274 * 0.02562 * 11 10 9 13 13 C 1.38807 * 120.00055 * 179.97438 * 11 10 9 14 14 N 1.31579 * 119.99719 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00024 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47143 * 60.00156 * 15 13 11 17 17 H 1.48503 * 109.47226 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47104 * 300.00303 * 15 13 11 19 19 H 1.08999 * 109.47610 * 300.00468 * 1 2 3 20 20 H 1.09002 * 109.46947 * 59.99946 * 1 2 3 21 21 H 1.09001 * 109.47565 * 180.02562 * 1 2 3 22 22 H 0.97002 * 120.00014 * 179.97438 * 10 9 8 23 23 H 0.97007 * 119.99386 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3363 2.3300 -0.0005 5 6 1.9629 3.4953 -0.0010 6 17 1.0355 4.9628 -0.0024 7 7 3.2809 3.5607 -0.0063 8 7 4.0095 2.4997 -0.0007 9 6 3.4460 1.2994 -0.0002 10 7 4.2292 0.1516 0.0008 11 6 5.5937 0.2542 0.0006 12 1 6.0621 1.2274 0.0001 13 6 6.3760 -0.8924 0.0021 14 7 5.8054 -2.0780 0.0031 15 14 8.2387 -0.7523 0.0025 16 1 8.6794 -0.0158 1.2145 17 1 8.8373 -2.1113 0.0035 18 1 8.6802 -0.0183 -1.2106 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 3.8086 -0.7225 0.0016 23 1 6.3521 -2.8794 0.0038 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182668.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:21 Heat of formation + Delta-G solvation = 12.206541 kcal Electronic energy + Delta-G solvation = -13600.806464 eV Core-core repulsion = 10896.698721 eV Total energy + Delta-G solvation = -2704.107743 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.031 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.37800 -39.61926 -38.10117 -37.47221 -34.93987 -34.30355 -31.19013 -28.82440 -27.31186 -25.27980 -24.59278 -20.90230 -19.77961 -18.87563 -18.77137 -17.49140 -16.79325 -16.49513 -15.81781 -15.60794 -15.54149 -14.06345 -13.79260 -13.38945 -12.97346 -12.83051 -12.82477 -12.62046 -12.41042 -12.24421 -12.23713 -12.08826 -11.43061 -10.89043 -10.19040 -9.22973 -8.79977 -5.98205 -0.08242 0.00750 0.64462 1.43820 1.51613 1.55452 1.79966 2.14410 2.51980 2.64306 3.03169 3.18689 3.59096 4.25984 4.41098 4.47112 4.52534 4.75081 5.18668 5.40096 5.88621 6.07121 6.46284 6.89821 7.08528 7.97970 8.33172 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.034839 B = 0.007764 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.510695 B = 3605.597168 C = 4393.963183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.295 3.705 4 N -0.498 5.498 5 C 0.171 3.829 6 Cl 0.019 6.981 7 N -0.239 5.239 8 N -0.307 5.307 9 C 0.210 3.790 10 N -0.474 5.474 11 C -0.306 4.306 12 H 0.115 0.885 13 C -0.005 4.005 14 N -0.885 5.885 15 Si 1.011 2.989 16 H -0.263 1.263 17 H -0.268 1.268 18 H -0.263 1.263 19 H 0.061 0.939 20 H 0.061 0.939 21 H 0.132 0.868 22 H 0.416 0.584 23 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 1.402 0.004 6.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.212 6.212 3 C 0.082 3.918 4 N -0.237 5.237 5 C -0.126 4.126 6 Cl 0.046 6.954 7 N -0.090 5.090 8 N -0.175 5.175 9 C -0.042 4.042 10 N -0.081 5.081 11 C -0.439 4.439 12 H 0.133 0.867 13 C -0.211 4.211 14 N -0.519 5.519 15 Si 0.831 3.169 16 H -0.187 1.187 17 H -0.192 1.192 18 H -0.187 1.187 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.150 0.850 22 H 0.254 0.746 23 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.517 1.826 0.000 5.812 hybrid contribution -0.403 -0.940 0.002 1.023 sum -5.920 0.887 0.002 5.986 Atomic orbital electron populations 1.23227 0.74817 1.05328 1.02739 1.86213 1.25326 1.22204 1.87409 1.20126 0.88183 0.86050 0.97488 1.67591 1.39812 0.97152 1.19109 1.23392 0.88081 0.87834 1.13278 1.98315 1.71117 1.28701 1.97270 1.72733 1.04198 1.22698 1.09362 1.73625 1.25339 0.92602 1.25960 1.19929 0.86649 0.91256 1.06355 1.40916 1.06129 1.04164 1.56849 1.20377 0.80386 0.96368 1.46739 0.86721 1.26510 1.06653 0.93519 0.94430 1.69735 1.39995 0.98868 1.43296 0.84705 0.73990 0.78317 0.79870 1.18739 1.19222 1.18748 0.91986 0.91987 0.85004 0.74608 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.42 113.37 1.18 2.04 14 2 O -0.31 -11.37 9.84 -88.33 -0.87 -12.23 14 3 C 0.29 12.57 7.56 85.10 0.64 13.21 14 4 N -0.50 -20.48 9.48 -302.49 -2.87 -23.35 14 5 C 0.17 7.20 8.25 180.68 1.49 8.69 14 6 Cl 0.02 0.64 29.28 -2.72 -0.08 0.56 14 7 N -0.24 -11.14 11.52 -53.66 -0.62 -11.76 14 8 N -0.31 -15.30 10.43 -54.46 -0.57 -15.87 14 9 C 0.21 10.02 7.55 133.35 1.01 11.03 14 10 N -0.47 -23.07 5.42 -188.12 -1.02 -24.09 14 11 C -0.31 -15.26 9.72 84.05 0.82 -14.45 14 12 H 0.12 5.84 7.12 -2.91 -0.02 5.82 14 13 C 0.00 -0.22 5.50 84.87 0.47 0.24 14 14 N -0.88 -42.46 13.05 21.65 0.28 -42.18 14 15 Si 1.01 37.07 29.55 68.60 2.03 39.10 14 16 H -0.26 -9.52 7.11 99.48 0.71 -8.81 14 17 H -0.27 -9.29 7.11 99.48 0.71 -8.58 14 18 H -0.26 -9.52 7.11 99.48 0.71 -8.82 14 19 H 0.06 1.57 8.12 -2.39 -0.02 1.55 14 20 H 0.06 1.57 8.12 -2.39 -0.02 1.55 14 21 H 0.13 2.44 8.14 -2.39 -0.02 2.42 14 22 H 0.42 19.92 7.34 -92.71 -0.68 19.24 14 23 H 0.29 12.96 8.31 -92.70 -0.77 12.19 14 Total: -1.00 -54.98 236.06 2.48 -52.49 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.59 Total: 16.56 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: 5.61 Total: 20.77 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -4.79 Total: -117.25 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.87 Total: -12.23 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Atomic # 17 Polarization: 0.64 SS G_CDS: -0.08 Total: 0.56 kcal Total: -54.98 2.48 -52.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182668.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.701 kcal (2) G-P(sol) polarization free energy of solvation -54.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds