Wall clock time and date at job start Sun Mar 29 2020 21:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31591 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48501 * 109.47284 * 180.27330 * 3 2 1 5 5 H 1.48498 * 109.47613 * 300.27810 * 3 2 1 6 6 H 1.48501 * 109.47425 * 60.27752 * 3 2 1 7 7 C 1.38777 * 120.00282 * 180.27749 * 2 1 3 8 8 H 1.08003 * 120.00602 * 179.72926 * 7 2 1 9 9 N 1.36823 * 119.99906 * 359.71899 * 7 2 1 10 10 C 1.38847 * 120.00355 * 180.02562 * 9 7 2 11 11 C 1.38995 * 120.17095 * 353.88458 * 10 9 7 12 12 C 1.38017 * 120.04534 * 179.74539 * 11 10 9 13 13 C 1.38561 * 120.41377 * 0.55861 * 12 11 10 14 14 C 1.37909 * 120.34882 * 359.69502 * 13 12 11 15 15 C 1.39555 * 119.94472 * 0.02951 * 14 13 12 16 16 C 1.47587 * 120.20763 * 180.02562 * 15 14 13 17 17 N 1.31328 * 125.74026 * 185.30787 * 16 15 14 18 18 C 1.34168 * 108.63822 * 179.83786 * 17 16 15 19 19 C 1.34541 * 107.85238 * 0.42595 * 18 17 16 20 20 O 1.34466 * 125.72965 * 5.61865 * 16 15 14 21 21 H 0.96999 * 119.99677 * 359.71907 * 1 2 3 22 22 H 0.97002 * 120.00091 * 0.02562 * 9 7 2 23 23 H 1.07996 * 119.97530 * 0.02562 * 11 10 9 24 24 H 1.08003 * 119.79797 * 180.30159 * 12 11 10 25 25 H 1.07997 * 119.83074 * 179.72501 * 13 12 11 26 26 H 1.08002 * 120.02788 * 180.02562 * 14 13 12 27 27 H 1.08002 * 126.07296 * 180.20189 * 18 17 16 28 28 H 1.08008 * 126.35387 * 179.76392 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3465 -0.0067 5 1 1.8861 2.3995 -1.2090 6 1 1.8963 2.3936 1.2159 7 6 2.0099 -1.2018 -0.0058 8 1 3.0899 -1.2018 -0.0102 9 7 1.3258 -2.3868 -0.0057 10 6 2.0200 -3.5892 -0.0110 11 6 3.4035 -3.5965 -0.1444 12 6 4.0915 -4.7930 -0.1441 13 6 3.4105 -5.9936 -0.0228 14 6 2.0374 -6.0061 0.1052 15 6 1.3275 -4.8046 0.1124 16 6 -0.1419 -4.8112 0.2497 17 7 -0.9243 -3.7593 0.1718 18 6 -2.1946 -4.1561 0.3427 19 6 -2.1879 -5.4870 0.5399 20 8 -0.9041 -5.8945 0.4813 21 1 -0.4849 0.8401 0.0041 22 1 0.3558 -2.3868 -0.0020 23 1 3.9409 -2.6651 -0.2438 24 1 5.1670 -4.7938 -0.2430 25 1 3.9579 -6.9246 -0.0281 26 1 1.5120 -6.9449 0.1998 27 1 -3.0670 -3.5197 0.3286 28 1 -3.0510 -6.1130 0.7126 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183127.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:42 Heat of formation + Delta-G solvation = 55.644693 kcal Electronic energy + Delta-G solvation = -15250.523726 eV Core-core repulsion = 12654.272795 eV Total energy + Delta-G solvation = -2596.250931 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.45892 -38.34497 -35.16232 -33.92710 -32.07836 -31.23656 -28.53171 -27.73391 -24.82764 -22.89008 -21.97436 -20.65257 -20.21608 -17.66181 -17.22772 -16.40783 -15.83403 -15.08339 -14.79444 -14.25700 -13.93122 -13.26439 -12.93897 -12.67861 -12.50313 -12.44412 -11.77285 -11.33484 -10.81657 -10.70652 -10.66080 -10.39385 -10.31170 -10.07070 -9.50791 -9.00462 -8.81194 -7.60737 -6.69631 -6.68339 -3.81059 1.60615 2.60517 2.62182 3.10158 3.12408 3.14835 3.44047 3.58013 3.94122 4.64895 4.83447 5.17488 5.31888 5.53478 5.61251 5.82802 5.90066 6.21374 6.38712 6.48022 6.55689 6.76022 6.97562 7.02884 7.13807 7.37410 7.40476 7.56055 7.65519 8.01003 8.47619 8.67127 9.28300 9.63313 10.43315 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.010189 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.506199 B = 2747.500646 C = 3988.048254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.025 3.975 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.309 4.309 8 H 0.107 0.893 9 N -0.509 5.509 10 C 0.216 3.784 11 C -0.207 4.207 12 C -0.051 4.051 13 C -0.258 4.258 14 C -0.015 4.015 15 C -0.187 4.187 16 C 0.280 3.720 17 N -0.511 5.511 18 C -0.020 4.020 19 C -0.127 4.127 20 O -0.212 6.212 21 H 0.278 0.722 22 H 0.427 0.573 23 H 0.120 0.880 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.175 0.825 28 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 -6.272 0.445 6.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.441 4.441 8 H 0.124 0.876 9 N -0.114 5.114 10 C 0.084 3.916 11 C -0.230 4.230 12 C -0.072 4.072 13 C -0.280 4.280 14 C -0.036 4.036 15 C -0.197 4.197 16 C 0.080 3.920 17 N -0.241 5.241 18 C -0.160 4.160 19 C -0.198 4.198 20 O -0.101 6.101 21 H 0.088 0.912 22 H 0.275 0.725 23 H 0.138 0.862 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.192 0.808 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.029 -5.125 0.344 5.137 hybrid contribution -0.653 0.174 0.163 0.695 sum -0.683 -4.951 0.506 5.023 Atomic orbital electron populations 1.69814 1.06144 1.28826 1.44242 1.25516 0.95786 1.00414 0.96480 0.85707 0.79577 0.80361 0.78210 1.18811 1.20242 1.20259 1.20030 0.93503 0.83061 1.47458 0.87573 1.42214 1.11653 1.01791 1.55702 1.17501 0.91352 0.84898 0.97876 1.20420 0.92096 0.98002 1.12475 1.20739 0.98126 0.92329 0.96013 1.20173 0.93483 0.96990 1.17341 1.20557 0.94029 0.94935 0.94031 1.16294 0.82854 0.93736 1.26847 1.24219 0.93414 0.78431 0.95890 1.70169 1.01544 1.28758 1.23654 1.23192 0.95584 0.93618 1.03580 1.24663 0.84947 0.96921 1.13252 1.84463 1.17344 1.38202 1.70115 0.91181 0.72454 0.86177 0.87684 0.87873 0.87513 0.80804 0.77879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.34 13.05 55.49 0.72 -22.61 15 2 C 0.03 0.65 5.50 -17.46 -0.10 0.56 15 3 Si 0.94 19.50 29.55 -169.99 -5.02 14.47 15 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 7 C -0.31 -8.13 9.54 -15.12 -0.14 -8.27 15 8 H 0.11 2.60 5.72 -52.48 -0.30 2.30 15 9 N -0.51 -13.58 5.34 -9.41 -0.05 -13.63 15 10 C 0.22 5.24 6.62 -83.58 -0.55 4.69 15 11 C -0.21 -4.48 9.28 -39.38 -0.37 -4.84 15 12 C -0.05 -0.95 10.03 -39.54 -0.40 -1.35 15 13 C -0.26 -4.69 10.03 -39.58 -0.40 -5.09 15 14 C -0.02 -0.30 9.71 -39.21 -0.38 -0.68 15 15 C -0.19 -4.27 5.89 -104.77 -0.62 -4.89 15 16 C 0.28 6.36 7.86 -13.95 -0.11 6.25 15 17 N -0.51 -12.04 8.18 -11.76 -0.10 -12.13 15 18 C -0.02 -0.39 11.87 -17.84 -0.21 -0.60 15 19 C -0.13 -2.11 12.17 29.43 0.36 -1.75 15 20 O -0.21 -4.20 10.54 3.83 0.04 -4.16 15 21 H 0.28 7.00 8.31 -40.82 -0.34 6.66 15 22 H 0.43 11.77 4.45 -40.82 -0.18 11.59 15 23 H 0.12 2.52 6.00 -52.49 -0.31 2.20 15 24 H 0.11 1.61 8.06 -52.48 -0.42 1.19 15 25 H 0.10 1.58 8.06 -52.49 -0.42 1.16 15 26 H 0.11 1.86 7.91 -52.49 -0.42 1.45 15 27 H 0.17 2.74 8.06 -52.49 -0.42 2.32 15 28 H 0.20 2.27 8.06 -52.48 -0.42 1.85 15 LS Contribution 251.12 15.07 3.78 3.78 Total: -1.00 -29.51 251.12 -5.57 -35.08 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -2.04 Total: 15.17 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.91 Total: -15.98 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.58 Total: -48.38 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: 0.04 Total: -4.16 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.51 -5.57 -35.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183127.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.728 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds