Wall clock time and date at job start Sun Mar 29 2020 21:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31591 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48501 * 109.47284 * 180.27330 * 3 2 1 5 5 H 1.48498 * 109.47613 * 300.27810 * 3 2 1 6 6 H 1.48501 * 109.47425 * 60.27752 * 3 2 1 7 7 C 1.38777 * 120.00282 * 180.27749 * 2 1 3 8 8 H 1.08003 * 120.00602 * 179.72926 * 7 2 1 9 9 N 1.36823 * 119.99906 * 359.71899 * 7 2 1 10 10 C 1.38847 * 120.00355 * 180.02562 * 9 7 2 11 11 C 1.38995 * 120.17095 * 353.88458 * 10 9 7 12 12 C 1.38017 * 120.04534 * 179.74539 * 11 10 9 13 13 C 1.38561 * 120.41377 * 0.55861 * 12 11 10 14 14 C 1.37909 * 120.34882 * 359.69502 * 13 12 11 15 15 C 1.39555 * 119.94472 * 0.02951 * 14 13 12 16 16 C 1.47587 * 120.20763 * 180.02562 * 15 14 13 17 17 N 1.31328 * 125.74026 * 185.30787 * 16 15 14 18 18 C 1.34168 * 108.63822 * 179.83786 * 17 16 15 19 19 C 1.34541 * 107.85238 * 0.42595 * 18 17 16 20 20 O 1.34466 * 125.72965 * 5.61865 * 16 15 14 21 21 H 0.96999 * 119.99677 * 359.71907 * 1 2 3 22 22 H 0.97002 * 120.00091 * 0.02562 * 9 7 2 23 23 H 1.07996 * 119.97530 * 0.02562 * 11 10 9 24 24 H 1.08003 * 119.79797 * 180.30159 * 12 11 10 25 25 H 1.07997 * 119.83074 * 179.72501 * 13 12 11 26 26 H 1.08002 * 120.02788 * 180.02562 * 14 13 12 27 27 H 1.08002 * 126.07296 * 180.20189 * 18 17 16 28 28 H 1.08008 * 126.35387 * 179.76392 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3465 -0.0067 5 1 1.8861 2.3995 -1.2090 6 1 1.8963 2.3936 1.2159 7 6 2.0099 -1.2018 -0.0058 8 1 3.0899 -1.2018 -0.0102 9 7 1.3258 -2.3868 -0.0057 10 6 2.0200 -3.5892 -0.0110 11 6 3.4035 -3.5965 -0.1444 12 6 4.0915 -4.7930 -0.1441 13 6 3.4105 -5.9936 -0.0228 14 6 2.0374 -6.0061 0.1052 15 6 1.3275 -4.8046 0.1124 16 6 -0.1419 -4.8112 0.2497 17 7 -0.9243 -3.7593 0.1718 18 6 -2.1946 -4.1561 0.3427 19 6 -2.1879 -5.4870 0.5399 20 8 -0.9041 -5.8945 0.4813 21 1 -0.4849 0.8401 0.0041 22 1 0.3558 -2.3868 -0.0020 23 1 3.9409 -2.6651 -0.2438 24 1 5.1670 -4.7938 -0.2430 25 1 3.9579 -6.9246 -0.0281 26 1 1.5120 -6.9449 0.1998 27 1 -3.0670 -3.5197 0.3286 28 1 -3.0510 -6.1130 0.7126 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183127.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:42 Heat of formation + Delta-G solvation = 35.786534 kcal Electronic energy + Delta-G solvation = -15251.384840 eV Core-core repulsion = 12654.272795 eV Total energy + Delta-G solvation = -2597.112045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.03047 -40.02173 -36.85952 -35.55310 -33.83059 -32.85144 -30.12917 -29.37790 -26.63590 -24.47660 -23.57002 -22.27097 -21.83962 -19.46314 -18.79930 -18.00896 -17.42406 -16.56480 -16.55229 -15.90214 -15.47901 -14.86327 -14.59422 -14.31101 -14.19070 -13.94287 -13.49873 -13.00201 -12.52387 -12.32225 -12.22876 -12.02694 -11.97630 -11.67658 -11.14291 -10.65434 -10.49361 -9.18326 -8.50360 -8.42177 -5.73553 0.02859 0.96486 1.10618 1.39686 1.49922 1.55275 1.91992 1.98120 2.25092 2.91334 3.32770 3.41692 3.60646 4.10702 4.25034 4.30245 4.44610 4.74917 4.83402 4.93487 5.05873 5.17369 5.27161 5.37674 5.45191 5.72785 5.77038 5.88879 5.97011 6.41804 6.78429 6.95622 7.53167 7.79154 8.65852 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.010189 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.506199 B = 2747.500646 C = 3988.048254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.031 4.031 3 Si 1.007 2.993 4 H -0.252 1.252 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.333 4.333 8 H 0.111 0.889 9 N -0.558 5.558 10 C 0.203 3.797 11 C -0.235 4.235 12 C -0.037 4.037 13 C -0.234 4.234 14 C -0.023 4.023 15 C -0.201 4.201 16 C 0.249 3.751 17 N -0.545 5.545 18 C -0.061 4.061 19 C -0.084 4.084 20 O -0.211 6.211 21 H 0.276 0.724 22 H 0.417 0.583 23 H 0.117 0.883 24 H 0.147 0.853 25 H 0.148 0.852 26 H 0.133 0.867 27 H 0.196 0.804 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -9.091 0.641 9.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.231 4.231 3 Si 0.829 3.171 4 H -0.175 1.175 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.463 4.463 8 H 0.129 0.871 9 N -0.167 5.167 10 C 0.076 3.924 11 C -0.258 4.258 12 C -0.057 4.057 13 C -0.256 4.256 14 C -0.043 4.043 15 C -0.210 4.210 16 C 0.049 3.951 17 N -0.276 5.276 18 C -0.199 4.199 19 C -0.153 4.153 20 O -0.099 6.099 21 H 0.085 0.915 22 H 0.264 0.736 23 H 0.135 0.865 24 H 0.165 0.835 25 H 0.165 0.835 26 H 0.151 0.849 27 H 0.213 0.787 28 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 1.040 -8.013 0.540 8.098 hybrid contribution -0.997 0.524 0.125 1.133 sum 0.043 -7.489 0.666 7.519 Atomic orbital electron populations 1.69945 1.07727 1.29174 1.48077 1.26456 0.96587 1.03587 0.96482 0.84667 0.78723 0.75863 0.77881 1.17481 1.20142 1.20218 1.20319 0.93839 0.83829 1.48345 0.87131 1.42232 1.11248 1.02384 1.60815 1.18172 0.92716 0.85170 0.96364 1.20629 0.91350 0.99536 1.14320 1.21237 1.00248 0.91151 0.93079 1.20773 0.93038 0.98561 1.13222 1.20946 0.94964 0.94752 0.93656 1.16774 0.83606 0.94446 1.26212 1.24250 0.93789 0.79081 0.98024 1.70156 1.03775 1.30169 1.23547 1.23737 0.94918 0.95515 1.05739 1.25798 0.84900 0.96671 1.07974 1.84470 1.18464 1.37402 1.69521 0.91509 0.73593 0.86495 0.83493 0.83477 0.84918 0.78671 0.71869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.14 13.05 21.64 0.28 -52.86 15 2 C -0.03 -1.67 5.50 84.86 0.47 -1.20 15 3 Si 1.01 41.97 29.55 68.60 2.03 44.00 15 4 H -0.25 -9.73 7.11 99.48 0.71 -9.03 15 5 H -0.28 -11.25 7.11 99.48 0.71 -10.54 15 6 H -0.28 -11.30 7.11 99.48 0.71 -10.60 15 7 C -0.33 -18.52 9.54 84.04 0.80 -17.72 15 8 H 0.11 5.71 5.72 -2.91 -0.02 5.69 15 9 N -0.56 -31.47 5.34 -183.69 -0.98 -32.45 15 10 C 0.20 10.08 6.62 38.75 0.26 10.34 15 11 C -0.24 -10.08 9.28 22.40 0.21 -9.87 15 12 C -0.04 -1.25 10.03 22.29 0.22 -1.03 15 13 C -0.23 -7.44 10.03 22.27 0.22 -7.22 15 14 C -0.02 -0.85 9.71 22.51 0.22 -0.63 15 15 C -0.20 -9.12 5.89 -19.96 -0.12 -9.24 15 16 C 0.25 11.34 7.86 87.24 0.69 12.03 15 17 N -0.54 -26.41 8.18 -305.13 -2.50 -28.91 15 18 C -0.06 -2.28 11.87 83.49 0.99 -1.29 15 19 C -0.08 -2.52 12.17 66.97 0.82 -1.70 15 20 O -0.21 -7.88 10.54 -9.22 -0.10 -7.98 15 21 H 0.28 14.91 8.31 -92.71 -0.77 14.14 15 22 H 0.42 24.52 4.45 -92.71 -0.41 24.11 15 23 H 0.12 4.99 6.00 -2.91 -0.02 4.97 15 24 H 0.15 3.74 8.06 -2.91 -0.02 3.72 15 25 H 0.15 3.49 8.06 -2.91 -0.02 3.47 15 26 H 0.13 4.10 7.91 -2.91 -0.02 4.08 15 27 H 0.20 6.08 8.06 -2.91 -0.02 6.06 15 28 H 0.27 4.36 8.06 -2.91 -0.02 4.34 15 Total: -1.00 -69.61 251.12 4.29 -65.32 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: 0.79 Total: 40.40 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 4.77 Total: -27.53 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -3.20 Total: -114.22 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.10 Total: -7.98 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -69.61 4.29 -65.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183127.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.105 kcal (2) G-P(sol) polarization free energy of solvation -69.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds