Wall clock time and date at job start Sun Mar 29 2020 21:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86797 * 120.00462 * 2 1 4 4 H 1.48500 * 109.47141 * 240.00005 * 3 2 1 5 5 H 1.48500 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46847 * 120.00196 * 3 2 1 7 7 C 1.38809 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 N 1.36806 * 119.99617 * 359.97438 * 7 2 1 10 10 C 1.38986 * 119.99830 * 180.02562 * 9 7 2 11 11 C 1.39281 * 119.94639 * 180.02562 * 10 9 7 12 12 C 1.37670 * 120.05597 * 180.02562 * 11 10 9 13 13 C 1.39740 * 119.94099 * 359.97185 * 12 11 10 14 14 C 1.47669 * 120.05332 * 179.97438 * 13 12 11 15 15 C 1.36966 * 126.94115 * 179.97438 * 14 13 12 16 16 C 1.40932 * 103.87769 * 180.02562 * 15 14 13 17 17 N 1.30303 * 106.61288 * 0.02562 * 16 15 14 18 18 O 1.20893 * 111.95193 * 359.97438 * 17 16 15 19 19 C 1.39742 * 119.89579 * 0.25579 * 13 12 11 20 20 C 1.37665 * 119.94471 * 359.51154 * 19 13 12 21 21 H 0.97007 * 119.99314 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00766 * 0.02562 * 9 7 2 23 23 H 1.07996 * 119.97487 * 359.96970 * 11 10 9 24 24 H 1.07997 * 120.02516 * 179.97438 * 12 11 10 25 25 H 1.07996 * 128.05650 * 0.03905 * 15 14 13 26 26 H 1.08002 * 126.69099 * 179.97438 * 16 15 14 27 27 H 1.07994 * 120.03277 * 179.72828 * 19 13 12 28 28 H 1.08001 * 119.97784 * 180.21131 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.1037 1.6962 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1037 1.6961 1.2125 7 6 2.0098 -1.2022 0.0005 8 1 3.0897 -1.2022 0.0001 9 7 1.3256 -2.3869 0.0016 10 6 2.0204 -3.5906 0.0027 11 6 1.3227 -4.7961 0.0032 12 6 2.0086 -5.9897 0.0048 13 6 3.4060 -5.9911 0.0053 14 6 4.1443 -7.2700 0.0076 15 6 5.5039 -7.4356 0.0078 16 6 5.6740 -8.8346 0.0097 17 7 4.4795 -9.3552 0.0099 18 8 3.6172 -8.5078 0.0089 19 6 4.1037 -4.7803 0.0096 20 6 3.4133 -3.5893 0.0031 21 1 -0.4849 0.8402 0.0004 22 1 0.3556 -2.3868 0.0016 23 1 0.2427 -4.7945 0.0033 24 1 1.4672 -6.9241 0.0056 25 1 6.2676 -6.6720 0.0070 26 1 6.6116 -9.3707 0.0101 27 1 5.1837 -4.7788 0.0144 28 1 3.9520 -2.6533 0.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183369.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:37 Heat of formation + Delta-G solvation = 82.215408 kcal Electronic energy + Delta-G solvation = -14586.472742 eV Core-core repulsion = 11991.374004 eV Total energy + Delta-G solvation = -2595.098738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.28274 -38.53763 -35.51412 -33.40875 -32.58231 -31.06842 -30.13665 -27.64780 -25.00997 -23.24950 -22.16775 -21.44827 -20.30982 -17.95005 -17.40648 -16.99943 -16.53367 -15.24389 -14.85484 -14.45298 -13.65995 -13.35607 -13.01935 -12.77623 -12.66600 -12.53982 -11.97090 -11.45721 -11.21908 -10.88964 -10.77498 -10.73019 -10.55076 -10.07553 -9.93796 -9.40431 -8.62493 -8.21755 -6.86696 -6.77202 -3.98424 1.43613 2.36597 2.50868 2.90368 3.02338 3.03955 3.13425 3.61209 3.83369 4.52551 4.72700 4.97312 5.01395 5.16409 5.54617 5.72395 5.72927 5.89353 6.00854 6.21607 6.45408 6.48780 6.61930 6.86373 6.99492 7.21644 7.30649 7.36719 7.46557 7.85038 8.45243 8.71690 9.02353 9.20764 10.28070 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.065089 B = 0.005058 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.076180 B = 5534.859005 C = 5955.092361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.024 3.976 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.109 0.891 9 N -0.531 5.531 10 C 0.211 3.789 11 C -0.241 4.241 12 C -0.023 4.023 13 C -0.192 4.192 14 C 0.082 3.918 15 C -0.286 4.286 16 C -0.005 4.005 17 N -0.395 5.395 18 O 0.077 5.923 19 C -0.018 4.018 20 C -0.224 4.224 21 H 0.281 0.719 22 H 0.402 0.598 23 H 0.109 0.891 24 H 0.111 0.889 25 H 0.163 0.837 26 H 0.181 0.819 27 H 0.108 0.892 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 -5.480 0.013 8.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.435 4.435 8 H 0.126 0.874 9 N -0.128 5.128 10 C 0.084 3.916 11 C -0.265 4.265 12 C -0.043 4.043 13 C -0.197 4.197 14 C 0.019 3.981 15 C -0.309 4.309 16 C -0.182 4.182 17 N -0.104 5.104 18 O 0.017 5.983 19 C -0.039 4.039 20 C -0.248 4.248 21 H 0.091 0.909 22 H 0.238 0.762 23 H 0.127 0.873 24 H 0.129 0.871 25 H 0.180 0.820 26 H 0.198 0.802 27 H 0.126 0.874 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.296 -6.179 0.014 8.138 hybrid contribution 0.554 1.512 0.002 1.610 sum 5.850 -4.667 0.016 7.484 Atomic orbital electron populations 1.69669 1.06220 1.29440 1.45968 1.25447 0.95811 1.00454 0.96423 0.85795 0.78926 0.79592 0.79435 1.19374 1.20472 1.19379 1.19862 0.93488 0.82585 1.47607 0.87382 1.41205 1.08623 1.02550 1.60382 1.17975 0.91823 0.85850 0.95914 1.20144 0.98473 0.91058 1.16797 1.20597 0.92511 0.96834 0.94390 1.16850 0.92252 0.86729 1.23919 1.22857 0.92034 0.86274 0.96921 1.22400 0.95617 0.96235 1.16691 1.24708 0.97035 0.93371 1.03100 1.73769 0.99164 1.15331 1.22180 1.84823 1.32360 1.12208 1.68882 1.20494 0.97936 0.90640 0.94810 1.20296 0.92386 0.97365 1.14717 0.90896 0.76236 0.87273 0.87128 0.81982 0.80183 0.87371 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.80 13.05 55.49 0.72 -21.07 15 2 C 0.02 0.58 5.50 -17.45 -0.10 0.48 15 3 Si 0.94 18.34 29.55 -169.99 -5.02 13.31 15 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 15 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 7 C -0.31 -7.23 9.55 -15.12 -0.14 -7.37 15 8 H 0.11 2.43 5.66 -52.49 -0.30 2.13 15 9 N -0.53 -12.11 5.42 -9.58 -0.05 -12.16 15 10 C 0.21 4.43 6.62 -83.84 -0.56 3.88 15 11 C -0.24 -4.62 9.87 -39.40 -0.39 -5.01 15 12 C -0.02 -0.42 9.72 -39.23 -0.38 -0.80 15 13 C -0.19 -3.48 5.88 -104.92 -0.62 -4.10 15 14 C 0.08 1.41 7.16 -36.19 -0.26 1.15 15 15 C -0.29 -4.33 10.51 -39.02 -0.41 -4.74 15 16 C 0.00 -0.07 12.15 -17.18 -0.21 -0.27 15 17 N -0.40 -6.77 12.05 30.45 0.37 -6.41 15 18 O 0.08 1.38 11.04 15.86 0.17 1.55 15 19 C -0.02 -0.33 9.57 -39.23 -0.38 -0.70 15 20 C -0.22 -4.43 9.28 -39.40 -0.37 -4.79 15 21 H 0.28 6.59 8.31 -40.82 -0.34 6.25 15 22 H 0.40 9.26 7.89 -40.82 -0.32 8.94 15 23 H 0.11 1.93 8.06 -52.49 -0.42 1.51 15 24 H 0.11 1.79 7.95 -52.49 -0.42 1.38 15 25 H 0.16 2.06 7.47 -52.49 -0.39 1.67 15 26 H 0.18 1.91 8.06 -52.49 -0.42 1.49 15 27 H 0.11 1.64 7.15 -52.49 -0.38 1.26 15 28 H 0.12 2.34 5.93 -52.49 -0.31 2.03 15 LS Contribution 254.72 15.07 3.84 3.84 Total: -1.00 -25.33 254.72 -5.87 -31.20 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -2.10 Total: 12.01 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -3.80 Total: -22.27 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 1.04 Total: -39.64 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.17 Total: 1.55 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -25.33 -5.87 -31.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183369.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.412 kcal (2) G-P(sol) polarization free energy of solvation -25.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds