Wall clock time and date at job start Sun Mar 29 2020 22:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38425 * 120.97514 * 2 1 4 4 N 1.39122 * 120.21619 * 0.25895 * 3 2 1 5 5 C 1.36767 * 119.99621 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.38852 * 119.99477 * 180.02562 * 5 4 3 8 8 N 1.31547 * 120.00675 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99720 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47615 * 89.99953 * 9 7 5 11 11 H 1.48507 * 109.46849 * 210.00028 * 9 7 5 12 12 H 1.48503 * 109.47243 * 329.99410 * 9 7 5 13 13 C 1.40246 * 119.56308 * 180.23994 * 3 2 1 14 14 N 1.30902 * 121.56996 * 0.05600 * 13 3 2 15 15 C 1.33713 * 121.68592 * 359.96373 * 14 13 3 16 16 N 1.33811 * 120.69183 * 180.02562 * 15 14 13 17 17 C 1.31377 * 119.84300 * 179.97438 * 16 15 14 18 18 C 1.39609 * 120.81377 * 0.02562 * 17 16 15 19 19 N 1.31409 * 120.57376 * 359.93011 * 18 17 16 20 20 C 1.33700 * 119.67120 * 0.08947 * 19 18 17 21 21 H 1.09000 * 109.47494 * 269.71905 * 1 2 3 22 22 H 1.09005 * 109.47103 * 29.71626 * 1 2 3 23 23 H 1.09002 * 109.47471 * 149.71560 * 1 2 3 24 24 H 0.96996 * 120.00145 * 359.97438 * 4 3 2 25 25 H 0.96999 * 120.00686 * 180.02562 * 8 7 5 26 26 H 1.08009 * 119.21785 * 179.97438 * 13 3 2 27 27 H 1.08005 * 119.59793 * 180.02562 * 17 16 15 28 28 H 1.07993 * 119.71687 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2194 1.1868 0.0000 4 7 1.5490 2.4059 0.0054 5 6 2.2574 3.5758 0.0049 6 1 3.3371 3.5533 0.0006 7 6 1.5882 4.7924 0.0108 8 7 0.2731 4.8199 0.0165 9 14 2.5557 6.3904 0.0108 10 1 2.8062 6.8175 -1.3892 11 1 1.7778 7.4400 0.7169 12 1 3.8522 6.1842 0.7049 13 6 3.6214 1.1523 -0.0051 14 7 4.2790 0.0205 -0.0110 15 6 3.6480 -1.1584 -0.0117 16 7 4.3403 -2.3036 -0.0173 17 6 3.7032 -3.4526 -0.0174 18 6 2.3078 -3.4967 -0.0123 19 7 1.6041 -2.3869 -0.0059 20 6 2.2306 -1.2058 -0.0061 21 1 -0.3634 -0.0050 1.0276 22 1 -0.3633 0.8926 -0.5094 23 1 -0.3634 -0.8874 -0.5182 24 1 0.5792 2.4261 0.0089 25 1 -0.1944 5.6698 0.0203 26 1 4.1717 2.0817 -0.0055 27 1 4.2659 -4.3745 -0.0215 28 1 1.8024 -4.4510 -0.0129 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:06 Heat of formation + Delta-G solvation = 76.209386 kcal Electronic energy + Delta-G solvation = -15098.557170 eV Core-core repulsion = 12535.490743 eV Total energy + Delta-G solvation = -2563.066427 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62373 -38.11186 -35.60069 -34.25493 -32.54514 -31.45737 -29.08584 -26.89990 -25.41817 -24.47747 -22.92576 -20.88821 -18.62616 -18.51458 -17.14655 -16.24474 -15.62217 -14.85323 -14.68092 -14.40301 -14.03791 -13.59150 -12.86598 -12.52258 -12.19319 -11.98617 -11.86833 -11.61146 -11.16296 -11.04631 -10.96251 -10.74830 -10.65044 -10.36255 -9.72396 -9.18871 -8.31674 -7.91850 -7.11177 -7.10429 -4.14563 0.92677 1.38574 2.76159 2.93567 2.94307 2.97440 3.53514 3.66861 4.42560 4.56006 4.67709 4.95037 4.97841 5.11742 5.43626 5.57061 5.67730 5.87697 6.01454 6.24857 6.33995 6.43448 6.59195 6.75211 6.91228 6.98722 7.07058 7.46495 7.90039 8.19464 8.39709 8.69217 8.84022 8.94747 10.02611 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.049514 B = 0.006796 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.359139 B = 4118.826649 C = 4669.040886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.214 4.214 3 C 0.141 3.859 4 N -0.499 5.499 5 C -0.307 4.307 6 H 0.114 0.886 7 C 0.030 3.970 8 N -0.861 5.861 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.261 1.261 13 C 0.134 3.866 14 N -0.437 5.437 15 C 0.156 3.844 16 N -0.397 5.397 17 C 0.001 3.999 18 C 0.082 3.918 19 N -0.458 5.458 20 C 0.114 3.886 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.408 0.592 25 H 0.287 0.713 26 H 0.165 0.835 27 H 0.157 0.843 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -4.830 -0.048 4.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.231 4.231 3 C 0.009 3.991 4 N -0.096 5.096 5 C -0.438 4.438 6 H 0.132 0.868 7 C -0.179 4.179 8 N -0.493 5.493 9 Si 0.766 3.234 10 H -0.195 1.195 11 H -0.201 1.201 12 H -0.185 1.185 13 C -0.054 4.054 14 N -0.146 5.146 15 C -0.087 4.087 16 N -0.112 5.112 17 C -0.176 4.176 18 C -0.093 4.093 19 N -0.175 5.175 20 C -0.012 4.012 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.246 0.754 25 H 0.097 0.903 26 H 0.182 0.818 27 H 0.175 0.825 28 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.468 -4.260 -0.043 4.506 hybrid contribution -0.988 0.691 0.005 1.206 sum 0.480 -3.569 -0.038 3.601 Atomic orbital electron populations 1.20110 0.90940 1.01287 1.00742 1.18612 0.95469 0.88693 1.20342 1.18561 0.92680 0.86377 1.01437 1.41324 1.09381 1.01988 1.56936 1.20059 0.93547 0.82679 1.47510 0.86802 1.25561 0.96016 1.00722 0.95577 1.69652 1.07132 1.29475 1.43077 0.85645 0.79403 0.79135 0.79186 1.19504 1.20147 1.18525 1.22785 0.90004 0.95630 0.96942 1.67228 1.39531 0.96740 1.11131 1.19449 0.88211 0.91291 1.09755 1.67825 1.39691 0.97459 1.06177 1.23349 0.93150 0.95991 1.05085 1.23742 0.92865 0.97483 0.95251 1.68541 1.38803 0.97665 1.12454 1.19521 0.91703 0.92342 0.97585 0.93042 0.93142 0.91675 0.75378 0.90310 0.81809 0.82539 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 9.43 36.00 0.34 -1.06 15 2 C -0.21 -4.62 5.98 -103.65 -0.62 -5.24 15 3 C 0.14 3.06 6.61 -83.73 -0.55 2.50 15 4 N -0.50 -11.00 5.34 -9.52 -0.05 -11.05 15 5 C -0.31 -6.80 9.56 -15.12 -0.14 -6.94 15 6 H 0.11 2.33 5.67 -52.49 -0.30 2.03 15 7 C 0.03 0.66 5.50 -17.45 -0.10 0.56 15 8 N -0.86 -20.07 13.05 55.49 0.72 -19.35 15 9 Si 0.94 17.15 29.55 -169.99 -5.02 12.12 15 10 H -0.27 -4.92 7.11 56.52 0.40 -4.51 15 11 H -0.28 -5.06 7.11 56.52 0.40 -4.66 15 12 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 13 C 0.13 2.84 10.45 -17.19 -0.18 2.66 15 14 N -0.44 -9.86 10.40 -12.35 -0.13 -9.99 15 15 C 0.16 3.53 7.60 -157.67 -1.20 2.33 15 16 N -0.40 -8.31 10.55 -12.42 -0.13 -8.44 15 17 C 0.00 0.01 11.20 -17.23 -0.19 -0.18 15 18 C 0.08 1.32 11.22 -17.22 -0.19 1.13 15 19 N -0.46 -9.07 9.63 -10.79 -0.10 -9.17 15 20 C 0.11 2.50 6.58 -84.78 -0.56 1.94 15 21 H 0.05 0.94 8.14 -51.93 -0.42 0.51 15 22 H 0.05 0.93 6.64 -51.93 -0.34 0.58 15 23 H 0.06 1.19 7.63 -51.93 -0.40 0.80 15 24 H 0.41 9.12 5.97 -40.82 -0.24 8.88 15 25 H 0.29 6.25 8.31 -40.82 -0.34 5.91 15 26 H 0.17 3.09 5.93 -52.48 -0.31 2.78 15 27 H 0.16 1.89 8.06 -52.48 -0.42 1.46 15 28 H 0.16 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 248.38 15.07 3.74 3.74 Total: -1.00 -27.16 248.38 -6.36 -33.52 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -2.00 Total: 10.90 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -3.40 Total: -2.29 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.31 Total: -58.01 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.02 Total: 12.12 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.16 -6.36 -33.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.734 kcal (2) G-P(sol) polarization free energy of solvation -27.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds