Wall clock time and date at job start Sun Mar 29 2020 21:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39342 * 120.52094 * 80.55582 * 3 2 1 5 5 C 1.39690 * 118.17435 * 179.97438 * 4 3 2 6 6 N 1.38485 * 120.50144 * 179.97438 * 5 4 3 7 7 C 1.36869 * 120.00375 * 0.02562 * 6 5 4 8 8 H 1.08008 * 119.99750 * 359.97438 * 7 6 5 9 9 C 1.38890 * 120.00588 * 179.97438 * 7 6 5 10 10 N 1.31506 * 119.99479 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00048 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47690 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.46637 * 120.00460 * 11 9 7 14 14 H 1.48499 * 109.47228 * 239.99975 * 11 9 7 15 15 N 1.33028 * 118.99416 * 0.02562 * 5 4 3 16 16 C 1.31784 * 120.94677 * 0.02562 * 15 5 4 17 17 C 1.50693 * 118.98963 * 180.02562 * 16 15 5 18 18 C 1.53002 * 117.49829 * 188.74297 * 17 16 15 19 19 C 1.53004 * 117.49977 * 120.08716 * 17 16 15 20 20 N 1.31613 * 122.01725 * 359.73515 * 16 15 5 21 21 H 1.07997 * 120.91652 * 359.95301 * 4 3 2 22 22 H 0.97005 * 120.00126 * 179.97438 * 6 5 4 23 23 H 0.97004 * 119.99778 * 179.97438 * 10 9 7 24 24 H 1.09004 * 115.55009 * 334.41587 * 17 16 15 25 25 H 1.09000 * 117.50023 * 0.02562 * 18 17 16 26 26 H 1.09006 * 117.49770 * 145.02180 * 18 17 16 27 27 H 1.08997 * 117.49915 * 214.98470 * 19 17 16 28 28 H 1.09005 * 117.49574 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2757 -0.1960 -1.1841 5 6 4.6714 -0.1855 -1.1278 6 7 5.4227 -0.3765 -2.2753 7 6 4.7982 -0.5772 -3.4766 8 1 3.7195 -0.5869 -3.5295 9 6 5.5516 -0.7683 -4.6277 10 7 6.8651 -0.7569 -4.5632 11 14 4.6993 -1.0428 -6.2670 12 1 3.2276 -1.0113 -6.0712 13 1 5.0950 0.0287 -7.2161 14 1 5.0978 -2.3633 -6.8171 15 7 5.2680 0.0099 0.0451 16 6 4.5617 0.1911 1.1428 17 6 5.2830 0.4091 2.4478 18 6 4.4438 0.4112 3.7271 19 6 5.0220 1.7222 3.1886 20 7 3.2456 0.1931 1.1334 21 1 2.7594 -0.3526 -2.1196 22 1 6.3915 -0.3674 -2.2279 23 1 7.3913 -0.8908 -5.3670 24 1 6.2875 -0.0101 2.5054 25 1 3.3700 0.2544 3.6249 26 1 4.8964 -0.0064 4.6266 27 1 5.8546 2.1666 3.7338 28 1 4.3287 2.4285 2.7317 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183726.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:43 Heat of formation + Delta-G solvation = 104.572942 kcal Electronic energy + Delta-G solvation = -14652.029202 eV Core-core repulsion = 12090.192710 eV Total energy + Delta-G solvation = -2561.836491 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.14215 -37.01023 -36.43862 -35.45012 -32.87160 -31.84728 -29.62976 -25.67492 -24.56379 -23.86231 -22.08655 -20.39100 -18.66556 -18.49710 -16.66240 -15.55805 -15.37431 -14.61056 -14.48043 -14.29885 -14.06651 -13.68462 -12.98474 -12.83967 -12.40476 -11.97386 -11.84218 -11.72166 -11.26664 -11.09521 -10.90703 -10.60953 -10.30611 -10.20025 -9.74145 -9.53383 -8.84176 -8.39691 -7.66582 -6.96070 -4.20169 1.34151 2.03744 2.89902 2.95593 2.99681 3.04110 3.46375 3.71111 3.96732 4.08209 4.39589 4.57937 4.82637 4.96319 5.19594 5.32224 5.45904 5.80549 5.87497 5.89416 6.00798 6.22865 6.34669 6.42984 6.54178 6.92098 7.07519 7.41921 7.71204 7.83931 8.36457 8.80562 8.93610 9.34323 10.18232 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.027996 B = 0.007042 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.893473 B = 3974.966306 C = 4895.698575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.290 3.710 3 C 0.246 3.754 4 C -0.244 4.244 5 C 0.369 3.631 6 N -0.493 5.493 7 C -0.311 4.311 8 H 0.111 0.889 9 C 0.034 3.966 10 N -0.866 5.866 11 Si 0.940 3.060 12 H -0.263 1.263 13 H -0.275 1.275 14 H -0.275 1.275 15 N -0.591 5.591 16 C 0.396 3.604 17 C -0.086 4.086 18 C -0.158 4.158 19 C -0.161 4.161 20 N -0.589 5.589 21 H 0.139 0.861 22 H 0.410 0.590 23 H 0.283 0.717 24 H 0.123 0.877 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 1.398 6.380 6.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.027 4.027 3 C 0.107 3.893 4 C -0.280 4.280 5 C 0.118 3.882 6 N -0.098 5.098 7 C -0.443 4.443 8 H 0.129 0.871 9 C -0.175 4.175 10 N -0.500 5.500 11 Si 0.765 3.235 12 H -0.187 1.187 13 H -0.200 1.200 14 H -0.200 1.200 15 N -0.320 5.320 16 C 0.124 3.876 17 C -0.107 4.107 18 C -0.196 4.196 19 C -0.199 4.199 20 N -0.317 5.317 21 H 0.157 0.843 22 H 0.247 0.753 23 H 0.093 0.907 24 H 0.141 0.859 25 H 0.127 0.873 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.781 1.446 6.675 7.059 hybrid contribution 0.244 -0.299 -1.764 1.805 sum -1.537 1.147 4.912 5.273 Atomic orbital electron populations 1.81136 1.11788 1.08443 1.08388 1.25190 0.91872 0.93246 0.92386 1.16019 0.85231 0.97613 0.90420 1.21700 0.94240 1.13384 0.98684 1.18039 0.87756 0.95766 0.86602 1.40859 1.08937 1.56989 1.03047 1.19932 0.93974 1.47226 0.83145 0.87120 1.25487 0.95530 0.95801 1.00662 1.69672 1.04758 1.44032 1.31527 0.85631 0.79577 0.78485 0.79815 1.18664 1.20019 1.20013 1.67413 1.41039 1.25665 0.97887 1.21123 0.85155 0.89741 0.91555 1.20491 0.99365 1.03217 0.87594 1.22967 1.01034 1.00294 0.95283 1.22922 1.03197 0.90843 1.02954 1.67807 1.09314 1.27180 1.27439 0.84287 0.75322 0.90657 0.85925 0.87304 0.88910 0.88619 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.92 18.54 41.83 0.78 -7.15 15 2 C 0.29 5.37 15.59 -22.47 -0.35 5.02 15 3 C 0.25 4.76 6.61 -84.83 -0.56 4.20 15 4 C -0.24 -4.94 9.12 -38.63 -0.35 -5.30 15 5 C 0.37 8.09 7.68 -154.78 -1.19 6.90 15 6 N -0.49 -11.38 5.43 -11.00 -0.06 -11.44 15 7 C -0.31 -7.22 9.56 -15.06 -0.14 -7.36 15 8 H 0.11 2.42 5.73 -52.48 -0.30 2.12 15 9 C 0.03 0.77 5.50 -17.45 -0.10 0.67 15 10 N -0.87 -20.98 13.05 55.49 0.72 -20.25 15 11 Si 0.94 17.90 29.55 -169.99 -5.02 12.87 15 12 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 13 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 14 H -0.27 -5.24 7.11 56.52 0.40 -4.83 15 15 N -0.59 -12.53 10.35 -9.99 -0.10 -12.63 15 16 C 0.40 7.60 7.31 -157.36 -1.15 6.45 15 17 C -0.09 -1.31 6.23 -91.77 -0.57 -1.88 15 18 C -0.16 -2.01 10.01 -26.69 -0.27 -2.28 15 19 C -0.16 -2.06 10.24 -26.69 -0.27 -2.33 15 20 N -0.59 -11.39 9.28 -8.78 -0.08 -11.48 15 21 H 0.14 2.68 6.07 -52.49 -0.32 2.36 15 22 H 0.41 9.76 8.02 -40.82 -0.33 9.43 15 23 H 0.28 6.40 8.31 -40.82 -0.34 6.06 15 24 H 0.12 1.73 8.14 -51.93 -0.42 1.30 15 25 H 0.11 1.53 7.54 -51.93 -0.39 1.14 15 26 H 0.09 0.96 8.14 -51.93 -0.42 0.53 15 27 H 0.10 1.00 8.14 -51.93 -0.42 0.57 15 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 LS Contribution 263.59 15.07 3.97 3.97 Total: -1.00 -24.83 263.59 -6.91 -31.74 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -2.16 Total: 10.27 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -4.95 Total: 4.09 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: 1.26 Total: -62.95 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.02 Total: 12.87 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -24.83 -6.91 -31.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183726.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.314 kcal (2) G-P(sol) polarization free energy of solvation -24.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds