Wall clock time and date at job start Sun Mar 29 2020 21:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86803 * 119.99648 * 2 1 4 4 H 1.48504 * 109.46805 * 239.99915 * 3 2 1 5 5 H 1.48497 * 109.47248 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47066 * 120.00272 * 3 2 1 7 7 C 1.38773 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36825 * 120.00366 * 359.97438 * 7 2 1 10 10 C 1.39365 * 120.00294 * 180.02562 * 9 7 2 11 11 C 1.39587 * 120.44368 * 180.02562 * 10 9 7 12 12 C 1.38244 * 118.40953 * 179.97438 * 11 10 9 13 13 C 1.39014 * 119.20087 * 0.02562 * 12 11 10 14 14 N 1.39885 * 119.58763 * 179.97438 * 13 12 11 15 15 C 1.37148 * 126.48605 * 185.27591 * 14 13 12 16 16 C 1.34632 * 106.83556 * 180.12431 * 15 14 13 17 17 N 1.34146 * 108.20726 * 359.61485 * 16 15 14 18 18 C 1.30502 * 109.36534 * 0.24533 * 17 16 15 19 19 N 1.32313 * 120.82682 * 0.26435 * 13 12 11 20 20 C 1.31815 * 121.73515 * 359.44562 * 19 13 12 21 21 H 0.96996 * 120.00056 * 359.97438 * 1 2 3 22 22 H 0.96996 * 119.99294 * 0.02562 * 9 7 2 23 23 H 1.08000 * 120.79856 * 359.95699 * 11 10 9 24 24 H 1.07998 * 120.39833 * 179.97438 * 12 11 10 25 25 H 1.08005 * 126.58810 * 0.02562 * 15 14 13 26 26 H 1.08002 * 125.90054 * 179.88778 * 16 15 14 27 27 H 1.08000 * 125.71583 * 179.97438 * 18 17 16 28 28 H 1.08000 * 119.64141 * 180.28032 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1037 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1037 1.6965 1.2124 7 6 2.0100 -1.2018 -0.0005 8 1 3.0900 -1.2017 -0.0001 9 7 1.3259 -2.3868 -0.0005 10 6 2.0228 -3.5937 -0.0005 11 6 1.3343 -4.8080 -0.0011 12 6 2.0676 -5.9799 -0.0016 13 6 3.4561 -5.9111 -0.0010 14 7 4.2061 -7.0919 -0.0010 15 6 5.5701 -7.1916 0.1009 16 6 5.8696 -8.5034 0.0563 17 7 4.7238 -9.1912 -0.0608 18 6 3.7204 -8.3576 -0.0962 19 7 4.0771 -4.7428 0.0052 20 6 3.4126 -3.6044 0.0003 21 1 -0.4850 0.8400 0.0004 22 1 0.3560 -2.3868 -0.0005 23 1 0.2545 -4.8314 -0.0008 24 1 1.5678 -6.9373 -0.0016 25 1 6.2700 -6.3746 0.1968 26 1 6.8608 -8.9289 0.1103 27 1 2.6788 -8.6282 -0.1864 28 1 3.9540 -2.6699 0.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187128.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:27 Heat of formation + Delta-G solvation = 91.197850 kcal Electronic energy + Delta-G solvation = -14682.793657 eV Core-core repulsion = 12120.377178 eV Total energy + Delta-G solvation = -2562.416479 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.03943 -40.77158 -37.56886 -34.75784 -33.73471 -32.82456 -30.40474 -29.19506 -26.88971 -24.69219 -23.96374 -21.89359 -21.69243 -19.76648 -19.51855 -18.30533 -16.93912 -16.44669 -16.18143 -15.94393 -15.56958 -14.76737 -14.73865 -14.66563 -14.49524 -13.83269 -13.79648 -13.33398 -13.05185 -12.54670 -12.46275 -12.14402 -11.30022 -11.07564 -10.84219 -10.44793 -10.32504 -9.47673 -8.62310 -8.56475 -5.82242 0.17030 0.49726 1.37023 1.43141 1.52190 1.57864 1.83063 2.21083 2.21780 2.83870 3.20418 3.27298 3.66217 3.83723 3.94829 4.16886 4.24412 4.54243 4.61426 4.76655 4.85676 5.08028 5.14977 5.32491 5.49235 5.53764 5.79343 5.90089 6.44070 6.66806 7.03469 7.19404 7.29829 7.43357 8.53553 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.063191 B = 0.005273 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.991672 B = 5308.741723 C = 5740.803314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.017 4.017 3 Si 0.996 3.004 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.325 4.325 8 H 0.111 0.889 9 N -0.547 5.547 10 C 0.142 3.858 11 C -0.180 4.180 12 C -0.092 4.092 13 C 0.165 3.835 14 N -0.385 5.385 15 C -0.052 4.052 16 C -0.047 4.047 17 N -0.518 5.518 18 C 0.175 3.825 19 N -0.458 5.458 20 C 0.004 3.996 21 H 0.281 0.719 22 H 0.400 0.600 23 H 0.150 0.850 24 H 0.164 0.836 25 H 0.176 0.824 26 H 0.193 0.807 27 H 0.237 0.763 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 -6.812 0.082 7.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.218 4.218 3 Si 0.819 3.181 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.454 4.454 8 H 0.128 0.872 9 N -0.147 5.147 10 C 0.017 3.983 11 C -0.211 4.211 12 C -0.114 4.114 13 C -0.063 4.063 14 N -0.063 5.063 15 C -0.186 4.186 16 C -0.194 4.194 17 N -0.237 5.237 18 C -0.106 4.106 19 N -0.168 5.168 20 C -0.165 4.165 21 H 0.090 0.910 22 H 0.234 0.766 23 H 0.168 0.832 24 H 0.181 0.819 25 H 0.193 0.807 26 H 0.210 0.790 27 H 0.253 0.747 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.614 -7.067 0.043 7.937 hybrid contribution -0.939 1.924 0.050 2.142 sum 2.676 -5.142 0.093 5.797 Atomic orbital electron populations 1.69748 1.07327 1.29954 1.48033 1.26178 0.96481 1.03033 0.96147 0.84897 0.77690 0.75972 0.79502 1.18974 1.20519 1.18960 1.20062 0.93729 0.83255 1.48389 0.87157 1.41029 1.08157 1.02110 1.63435 1.19068 0.93295 0.87341 0.98561 1.20873 1.00588 0.89697 1.09977 1.21294 0.90851 1.00106 0.99187 1.17776 0.88432 0.84427 1.15701 1.42929 1.06866 1.05609 1.50921 1.23024 0.84474 1.00258 1.10822 1.22634 0.98372 0.89760 1.08635 1.70267 0.99055 1.33407 1.20926 1.25736 1.01550 0.77453 1.05885 1.66459 1.41714 0.97629 1.11045 1.21718 0.90102 0.94324 1.10367 0.90992 0.76553 0.83198 0.81853 0.80665 0.79020 0.74730 0.83136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.12 13.05 21.64 0.28 -44.84 15 2 C -0.02 -0.79 5.50 84.85 0.47 -0.32 15 3 Si 1.00 37.28 29.55 68.60 2.03 39.31 15 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 5 H -0.28 -10.39 7.11 99.48 0.71 -9.68 15 6 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 7 C -0.32 -15.17 9.56 84.04 0.80 -14.36 15 8 H 0.11 4.91 5.70 -2.91 -0.02 4.90 15 9 N -0.55 -24.14 5.44 -183.96 -1.00 -25.14 15 10 C 0.14 5.70 6.64 38.45 0.26 5.95 15 11 C -0.18 -6.04 10.04 22.60 0.23 -5.81 15 12 C -0.09 -2.81 9.49 22.46 0.21 -2.60 15 13 C 0.17 5.91 7.50 132.76 1.00 6.90 15 14 N -0.38 -12.69 2.98 -355.72 -1.06 -13.75 15 15 C -0.05 -1.66 11.17 83.03 0.93 -0.74 15 16 C -0.05 -1.39 11.85 83.51 0.99 -0.40 15 17 N -0.52 -16.28 11.24 -199.68 -2.25 -18.52 15 18 C 0.17 5.04 11.89 179.99 2.14 7.18 15 19 N -0.46 -18.21 9.88 -192.06 -1.90 -20.11 15 20 C 0.00 0.17 10.47 84.87 0.89 1.05 15 21 H 0.28 13.15 8.31 -92.71 -0.77 12.38 15 22 H 0.40 17.81 7.91 -92.71 -0.73 17.08 15 23 H 0.15 4.25 8.06 -2.91 -0.02 4.22 15 24 H 0.16 3.57 6.76 -2.91 -0.02 3.55 15 25 H 0.18 5.25 8.06 -2.91 -0.02 5.22 15 26 H 0.19 4.32 8.06 -2.91 -0.02 4.29 15 27 H 0.24 4.69 7.06 -2.91 -0.02 4.67 15 28 H 0.15 6.11 5.97 -2.91 -0.02 6.10 15 Total: -1.00 -55.83 253.49 4.48 -51.35 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.47 Total: 34.84 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 7.91 Total: -3.14 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -5.92 Total: -122.36 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Total: -55.83 4.48 -51.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187128.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.547 kcal (2) G-P(sol) polarization free energy of solvation -55.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds