Wall clock time and date at job start Sun Mar 29 2020 21:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86803 * 119.99762 * 2 1 4 4 H 1.48499 * 109.46766 * 269.99240 * 3 2 1 5 5 H 1.48502 * 109.47424 * 29.99050 * 3 2 1 6 6 H 1.48500 * 109.47187 * 149.99708 * 3 2 1 7 7 C 1.38807 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00470 * 180.02562 * 7 2 1 9 9 N 1.36920 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.38865 * 119.99793 * 179.97438 * 9 7 2 11 11 C 1.38996 * 119.68242 * 359.97438 * 10 9 7 12 12 C 1.38932 * 119.02167 * 179.72113 * 11 10 9 13 13 O 1.35744 * 120.80728 * 180.25663 * 12 11 10 14 14 C 1.42898 * 117.00254 * 180.02562 * 13 12 11 15 15 F 1.39897 * 109.47422 * 299.99829 * 14 13 12 16 16 F 1.39901 * 109.47268 * 60.00003 * 14 13 12 17 17 C 1.39488 * 118.39238 * 0.27856 * 12 11 10 18 18 C 1.37907 * 119.26273 * 359.97438 * 17 12 11 19 19 N 1.31974 * 120.93176 * 0.02562 * 18 17 12 20 20 H 0.97005 * 120.00044 * 0.02562 * 1 2 3 21 21 H 0.97000 * 120.00340 * 359.97438 * 9 7 2 22 22 H 1.08002 * 120.49274 * 0.02562 * 11 10 9 23 23 H 1.09001 * 109.47035 * 179.97438 * 14 13 12 24 24 H 1.07994 * 120.36747 * 179.97438 * 17 12 11 25 25 H 1.08004 * 119.53264 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4470 2.6528 0.6998 6 1 3.5472 1.4403 0.7001 7 6 2.0098 -1.2021 0.0005 8 1 3.0898 -1.2021 0.0010 9 7 1.3252 -2.3878 0.0005 10 6 2.0195 -3.5904 0.0005 11 6 3.4095 -3.5827 0.0000 12 6 4.0902 -4.7937 0.0059 13 8 5.4472 -4.8285 0.0108 14 6 6.0632 -6.1178 0.0162 15 9 5.6652 -6.8201 1.1587 16 9 5.6733 -6.8257 -1.1258 17 6 3.3456 -5.9732 0.0062 18 6 1.9684 -5.9010 0.0012 19 7 1.3503 -4.7350 -0.0043 20 1 -0.4850 0.8401 -0.0004 21 1 0.3552 -2.3879 0.0005 22 1 3.9523 -2.6490 0.0000 23 1 7.1471 -6.0026 0.0193 24 1 3.8420 -6.9323 0.0103 25 1 1.3875 -6.8115 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187542.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:46 Heat of formation + Delta-G solvation = -125.904156 kcal Electronic energy + Delta-G solvation = -15565.496008 eV Core-core repulsion = 12407.142999 eV Total energy + Delta-G solvation = -3158.353009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.19373 -48.20994 -41.17107 -39.21799 -36.96808 -33.83562 -32.27616 -30.30320 -27.14839 -26.82889 -24.15654 -23.09079 -20.12125 -20.01230 -18.85605 -18.80148 -17.91034 -17.10512 -16.42182 -16.15892 -15.70748 -15.47531 -15.21761 -14.96285 -14.78586 -14.58864 -14.29983 -14.11733 -13.53158 -13.18706 -13.03553 -12.56043 -12.12347 -12.06965 -12.00747 -10.69344 -10.23085 -9.98573 -8.92152 -8.55339 -5.86476 0.57977 0.63738 1.42398 1.48991 1.56064 1.66984 2.23147 2.62131 2.82966 3.10133 3.34789 3.59943 3.78990 3.95365 4.18732 4.30131 4.57329 4.92255 5.11560 5.20289 5.27069 5.49175 5.83241 6.19994 6.65695 7.07727 7.35089 7.77181 8.62830 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.040648 B = 0.006717 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.683238 B = 4167.749615 C = 4681.938591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.022 4.022 3 Si 1.006 2.994 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.325 4.325 8 H 0.110 0.890 9 N -0.549 5.549 10 C 0.373 3.627 11 C -0.301 4.301 12 C 0.188 3.812 13 O -0.331 6.331 14 C 0.408 3.592 15 F -0.208 7.208 16 F -0.208 7.208 17 C -0.357 4.357 18 C 0.185 3.815 19 N -0.607 5.607 20 H 0.279 0.721 21 H 0.395 0.605 22 H 0.126 0.874 23 H 0.239 0.761 24 H 0.145 0.855 25 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.042 -9.064 0.057 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.223 4.223 3 Si 0.828 3.172 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.455 4.455 8 H 0.127 0.873 9 N -0.156 5.156 10 C 0.131 3.869 11 C -0.329 4.329 12 C 0.137 3.863 13 O -0.247 6.247 14 C 0.319 3.681 15 F -0.190 7.190 16 F -0.190 7.190 17 C -0.384 4.384 18 C 0.022 3.978 19 N -0.330 5.330 20 H 0.089 0.911 21 H 0.230 0.770 22 H 0.144 0.856 23 H 0.254 0.746 24 H 0.162 0.838 25 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.167 -8.390 0.056 13.968 hybrid contribution 0.296 0.457 -0.008 0.544 sum 11.463 -7.933 0.048 13.941 Atomic orbital electron populations 1.69812 1.07588 1.29714 1.48845 1.26320 0.96571 1.03209 0.96156 0.84718 0.78029 0.75623 0.78790 1.19489 1.20274 1.18152 1.20087 0.93518 0.82700 1.49186 0.87273 1.40837 1.08196 1.01634 1.64899 1.18244 0.88183 0.86415 0.94083 1.20313 0.92924 0.97002 1.22674 1.18769 0.81200 0.94213 0.92114 1.86523 1.18472 1.31784 1.87934 1.24310 0.99020 0.73771 0.71015 1.93067 1.93297 1.80071 1.52587 1.93068 1.93488 1.79818 1.52652 1.21842 0.96435 0.97019 1.23067 1.22523 0.91619 0.94617 0.89032 1.67199 1.41176 0.97897 1.26760 0.91129 0.77032 0.85587 0.74551 0.83764 0.80123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.63 13.05 21.65 0.28 -50.35 15 2 C -0.02 -1.14 5.50 84.87 0.47 -0.67 15 3 Si 1.01 40.43 29.55 68.60 2.03 42.45 15 4 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 5 H -0.28 -10.92 7.11 99.48 0.71 -10.21 15 6 H -0.26 -9.83 7.11 99.48 0.71 -9.13 15 7 C -0.33 -17.31 9.54 84.04 0.80 -16.51 15 8 H 0.11 5.53 5.65 -2.91 -0.02 5.52 15 9 N -0.55 -29.43 5.44 -189.29 -1.03 -30.46 15 10 C 0.37 18.52 7.61 133.02 1.01 19.53 15 11 C -0.30 -13.80 9.29 22.62 0.21 -13.59 15 12 C 0.19 7.36 6.52 22.74 0.15 7.51 15 13 O -0.33 -10.42 10.44 -90.69 -0.95 -11.37 15 14 C 0.41 8.63 5.98 113.37 0.68 9.31 15 15 F -0.21 -5.09 15.63 44.97 0.70 -4.38 15 16 F -0.21 -5.09 15.63 44.97 0.70 -4.38 15 17 C -0.36 -12.89 8.33 22.49 0.19 -12.70 15 18 C 0.18 6.96 11.17 84.59 0.94 7.90 15 19 N -0.61 -27.98 10.39 -193.44 -2.01 -29.99 15 20 H 0.28 14.32 8.31 -92.70 -0.77 13.55 15 21 H 0.40 22.11 8.01 -92.71 -0.74 21.37 15 22 H 0.13 5.81 5.94 -2.91 -0.02 5.79 15 23 H 0.24 1.91 8.14 -2.39 -0.02 1.90 15 24 H 0.14 4.49 5.27 -2.91 -0.02 4.47 15 25 H 0.18 5.20 8.06 -2.91 -0.02 5.18 15 Total: -1.00 -63.78 234.78 4.69 -59.09 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.52 Total: 28.62 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 4.45 Total: 0.77 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -2.76 Total: -110.79 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.95 Total: -11.37 kcal Atomic # 9 Polarization: -10.17 SS G_CDS: 1.41 Total: -8.77 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.45 kcal Total: -63.78 4.69 -59.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187542.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.814 kcal (2) G-P(sol) polarization free energy of solvation -63.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds