Wall clock time and date at job start Sun Mar 29 2020 21:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00265 * 2 1 4 4 H 1.48500 * 109.46736 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47114 * 300.00011 * 3 2 1 6 6 H 1.48496 * 109.47152 * 60.00036 * 3 2 1 7 7 C 1.37878 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00220 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00127 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.46813 * 300.00497 * 9 7 2 11 11 O 1.42901 * 109.47118 * 59.99891 * 9 7 2 12 12 C 1.52999 * 109.47225 * 180.02562 * 9 7 2 13 13 S 1.80998 * 109.47117 * 179.97438 * 12 9 7 14 14 C 1.76198 * 100.00187 * 180.02562 * 13 12 9 15 15 N 1.31694 * 126.01640 * 359.97438 * 14 13 12 16 16 C 1.33731 * 109.64363 * 180.02562 * 15 14 13 17 17 N 1.39565 * 125.51624 * 179.97438 * 16 15 14 18 18 N 1.31108 * 108.97485 * 359.97438 * 16 15 14 19 19 N 1.35009 * 126.02526 * 180.02562 * 14 13 12 20 20 H 0.96998 * 126.76920 * 359.97365 * 19 14 13 21 21 H 0.97004 * 119.99889 * 359.97438 * 1 2 3 22 22 H 0.96708 * 113.99526 * 60.00090 * 11 9 7 23 23 H 1.09001 * 109.47098 * 60.00005 * 12 9 7 24 24 H 1.08991 * 109.47043 * 300.00007 * 12 9 7 25 25 H 0.96999 * 119.99467 * 359.97438 * 17 16 15 26 26 H 0.96999 * 120.00220 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6245 -2.5570 0.8897 11 8 0.4289 -2.5746 -1.1670 12 6 2.2451 -3.6622 -0.0005 13 16 1.3400 -5.2296 0.0002 14 6 2.6896 -6.3623 0.0009 15 7 3.9676 -6.0442 0.0003 16 6 4.7081 -7.1578 0.0005 17 7 6.1030 -7.2039 -0.0005 18 7 3.9117 -8.1993 0.0018 19 7 2.5959 -7.7091 0.0011 20 1 1.7805 -8.2344 0.0012 21 1 -0.4850 0.8401 0.0004 22 1 0.9208 -2.5291 -1.9984 23 1 2.8717 -3.6045 0.8895 24 1 2.8717 -3.6045 -0.8904 25 1 6.6154 -6.3803 -0.0018 26 1 6.5600 -8.0595 -0.0006 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164569763.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:09 Heat of formation + Delta-G solvation = 35.256170 kcal Electronic energy + Delta-G solvation = -13408.421473 eV Core-core repulsion = 10843.190038 eV Total energy + Delta-G solvation = -2565.231435 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.058 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.60763 -35.98939 -34.67184 -32.22885 -31.81908 -29.85565 -29.70125 -25.44452 -23.18076 -21.16433 -21.02722 -18.49133 -17.27335 -16.97618 -15.80245 -15.52027 -15.16552 -14.69074 -14.38809 -14.16958 -13.74545 -12.67173 -11.85429 -11.75910 -11.40036 -11.28079 -10.96435 -10.93458 -10.35119 -10.03362 -9.99988 -9.86732 -9.23177 -8.67806 -8.49145 -8.36924 -7.38363 -6.11266 -4.30770 1.39415 1.73023 2.52757 2.93012 3.20721 3.23249 3.31969 3.35832 3.82526 4.33122 4.90359 5.16383 5.83214 5.90617 5.99990 6.14780 6.38869 6.65874 6.96843 7.38569 7.41423 7.48981 7.73170 7.98594 8.41386 8.70790 9.22959 9.45421 10.92899 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.042997 B = 0.006130 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.048149 B = 4566.931066 C = 5129.761917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.568 4.568 8 H 0.062 0.938 9 C 0.242 3.758 10 H 0.067 0.933 11 O -0.560 6.560 12 C -0.110 4.110 13 S 0.002 5.998 14 C 0.289 3.711 15 N -0.570 5.570 16 C 0.481 3.519 17 N -0.826 5.826 18 N -0.377 5.377 19 N -0.473 5.473 20 H 0.441 0.559 21 H 0.262 0.738 22 H 0.350 0.650 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.414 0.586 26 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.252 -11.248 -0.323 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.608 4.608 8 H 0.080 0.920 9 C 0.182 3.818 10 H 0.085 0.915 11 O -0.362 6.362 12 C -0.259 4.259 13 S 0.230 5.770 14 C -0.097 4.097 15 N -0.310 5.310 16 C 0.107 3.893 17 N -0.383 5.383 18 N -0.219 5.219 19 N -0.194 5.194 20 H 0.287 0.713 21 H 0.072 0.928 22 H 0.194 0.806 23 H 0.111 0.889 24 H 0.106 0.894 25 H 0.244 0.756 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.792 -11.794 0.143 12.731 hybrid contribution 2.113 0.895 -0.330 2.318 sum 6.906 -10.899 -0.187 12.904 Atomic orbital electron populations 1.70085 1.05966 1.26691 1.46420 1.25037 0.94772 0.99264 0.93576 0.86512 0.80215 0.83315 0.77762 1.19550 1.20786 1.20784 1.21520 0.93402 0.90326 1.55502 0.91997 1.19294 0.87543 0.87995 0.86993 0.91496 1.86591 1.38217 1.96036 1.15399 1.24925 1.02930 0.91644 1.06416 1.86188 1.01410 0.98794 1.90583 1.26703 0.97804 0.88248 0.96937 1.70830 0.99678 1.28554 1.31915 1.20477 0.87743 0.87050 0.94076 1.40902 0.98850 1.11664 1.86893 1.77952 0.86903 1.18743 1.38302 1.47403 1.07247 1.04115 1.60669 0.71265 0.92792 0.80608 0.88866 0.89397 0.75551 0.75926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.34 12.84 55.43 0.71 -23.63 15 2 C 0.08 2.16 5.40 -17.82 -0.10 2.07 15 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.44 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.57 -14.84 8.76 -34.44 -0.30 -15.14 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 9 C 0.24 5.77 2.87 -27.88 -0.08 5.69 15 10 H 0.07 1.75 8.14 -51.93 -0.42 1.33 15 11 O -0.56 -13.50 12.32 -35.23 -0.43 -13.93 15 12 C -0.11 -2.18 4.84 37.16 0.18 -2.00 15 13 S 0.00 0.03 21.95 -107.50 -2.36 -2.33 15 14 C 0.29 4.84 8.31 -89.40 -0.74 4.10 15 15 N -0.57 -10.14 10.59 -13.85 -0.15 -10.28 15 16 C 0.48 7.67 9.42 -321.25 -3.03 4.64 15 17 N -0.83 -9.38 9.13 29.99 0.27 -9.11 15 18 N -0.38 -6.02 12.80 29.98 0.38 -5.64 15 19 N -0.47 -6.96 7.46 30.44 0.23 -6.73 15 20 H 0.44 4.96 8.96 -182.36 -1.63 3.33 15 21 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 22 H 0.35 7.48 9.04 45.56 0.41 7.89 15 23 H 0.09 1.86 8.14 -51.91 -0.42 1.44 15 24 H 0.09 1.74 8.14 -51.92 -0.42 1.31 15 25 H 0.41 4.07 8.96 -40.82 -0.37 3.70 15 26 H 0.41 3.57 8.96 -40.82 -0.37 3.21 15 LS Contribution 253.95 15.07 3.83 3.83 Total: -1.00 -31.29 253.95 -9.37 -40.66 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -2.76 Total: 12.36 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -4.07 Total: -0.64 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 1.45 Total: -55.38 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.43 Total: -13.93 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.36 Total: -2.33 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.29 -9.37 -40.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164569763.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.916 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds