Wall clock time and date at job start Sun Mar 29 2020 22:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99878 * 2 1 4 4 H 1.08005 * 119.99984 * 201.01365 * 3 2 1 5 5 C 1.38874 * 120.00263 * 21.00865 * 3 2 1 6 6 N 1.31514 * 119.99876 * 13.82950 * 5 3 2 7 7 Si 1.86802 * 120.00148 * 193.82939 * 5 3 2 8 8 H 1.48507 * 109.46670 * 85.02390 * 7 5 3 9 9 H 1.48496 * 109.47270 * 205.02170 * 7 5 3 10 10 H 1.48495 * 109.47233 * 325.02518 * 7 5 3 11 11 C 1.38224 * 120.00228 * 179.97438 * 2 1 3 12 12 N 1.33206 * 118.63874 * 180.02562 * 11 2 1 13 13 C 1.31648 * 121.41989 * 180.02562 * 12 11 2 14 14 C 1.40700 * 118.44219 * 0.02562 * 13 12 11 15 15 C 1.40371 * 122.13806 * 179.97438 * 14 13 12 16 16 C 1.36844 * 118.01222 * 180.02562 * 15 14 13 17 17 C 1.39161 * 119.91954 * 0.02562 * 16 15 14 18 18 N 1.31324 * 121.83290 * 359.97438 * 17 16 15 19 19 C 1.33414 * 121.23573 * 0.02562 * 18 17 16 20 20 N 1.31970 * 118.63727 * 0.02858 * 11 2 1 21 21 H 1.08993 * 109.47293 * 274.39008 * 1 2 3 22 22 H 1.09007 * 109.46859 * 34.39287 * 1 2 3 23 23 H 1.09005 * 109.46851 * 154.38808 * 1 2 3 24 24 H 0.96997 * 119.99816 * 179.97438 * 6 5 3 25 25 H 1.08008 * 120.77780 * 180.02562 * 13 12 11 26 26 H 1.08001 * 120.99369 * 359.97438 * 15 14 13 27 27 H 1.08002 * 120.03717 * 179.97438 * 16 15 14 28 28 H 1.07997 * 119.08144 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1758 1.2171 -0.3354 5 6 1.5245 2.3487 0.4312 6 7 0.3871 2.2791 1.0877 7 14 2.2992 4.0115 0.0786 8 1 1.8970 4.4676 -1.2763 9 1 1.8384 4.9967 1.0896 10 1 3.7780 3.8921 0.1419 11 6 2.1561 -1.1970 0.0005 12 7 3.4878 -1.1653 0.0010 13 6 4.2007 -2.2721 0.0011 14 6 3.5234 -3.5054 0.0000 15 6 4.2058 -4.7321 -0.0006 16 6 3.4625 -5.8810 -0.0022 17 6 2.0728 -5.8087 -0.0037 18 7 1.4390 -4.6584 -0.0032 19 6 2.1043 -3.5020 -0.0016 20 7 1.4693 -2.3239 0.0005 21 1 -0.3633 0.0787 1.0246 22 1 -0.3633 0.8481 -0.5805 23 1 -0.3633 -0.9267 -0.4443 24 1 -0.0493 3.0912 1.3892 25 1 5.2801 -2.2343 0.0019 26 1 5.2852 -4.7680 -0.0007 27 1 3.9538 -6.8428 -0.0031 28 1 1.4995 -6.7239 -0.0054 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166798825.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:09 Heat of formation + Delta-G solvation = 104.448844 kcal Electronic energy + Delta-G solvation = -15177.229079 eV Core-core repulsion = 12615.387206 eV Total energy + Delta-G solvation = -2561.841873 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37982 -37.99285 -35.85984 -33.33228 -32.12914 -31.22524 -29.36596 -26.86917 -25.08945 -24.02279 -22.17428 -21.69673 -18.91862 -17.31284 -16.82429 -16.33004 -15.48125 -14.66652 -14.56863 -14.42839 -13.55751 -13.25562 -13.23842 -12.84668 -12.19293 -11.98361 -11.62447 -11.42764 -11.01273 -10.71151 -10.58184 -10.47619 -10.16674 -9.55210 -9.12646 -8.90084 -8.62751 -7.77314 -7.28654 -6.74418 -4.04610 1.03288 1.60379 2.73883 3.00664 3.02733 3.07414 3.70316 3.79834 4.20921 4.62465 4.75877 5.13297 5.21541 5.26495 5.43371 5.53162 5.63852 6.03595 6.18273 6.48661 6.51288 6.63047 6.77009 6.92035 7.08453 7.17570 7.20267 7.58208 8.03475 8.15353 8.58693 8.91171 8.96322 9.65759 10.21448 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.054652 B = 0.006855 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.213195 B = 4083.771853 C = 4535.672978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.357 5.357 3 C -0.287 4.287 4 H 0.117 0.883 5 C 0.029 3.971 6 N -0.848 5.848 7 Si 0.943 3.057 8 H -0.271 1.271 9 H -0.279 1.279 10 H -0.263 1.263 11 C 0.481 3.519 12 N -0.530 5.530 13 C 0.223 3.777 14 C -0.311 4.311 15 C 0.008 3.992 16 C -0.269 4.269 17 C 0.179 3.821 18 N -0.511 5.511 19 C 0.404 3.596 20 N -0.606 5.606 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.279 0.721 25 H 0.160 0.840 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.638 -6.869 -1.805 9.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.041 5.041 3 C -0.418 4.418 4 H 0.135 0.865 5 C -0.180 4.180 6 N -0.481 5.481 7 Si 0.768 3.232 8 H -0.197 1.197 9 H -0.204 1.204 10 H -0.187 1.187 11 C 0.128 3.872 12 N -0.245 5.245 13 C 0.032 3.968 14 C -0.324 4.324 15 C -0.021 4.021 16 C -0.293 4.293 17 C 0.003 3.997 18 N -0.225 5.225 19 C 0.151 3.849 20 N -0.341 5.341 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.177 0.823 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.591 -5.076 -1.692 6.444 hybrid contribution 1.677 -0.109 0.004 1.681 sum 5.268 -5.185 -1.689 7.582 Atomic orbital electron populations 1.21651 0.77801 1.00154 1.02805 1.42637 1.05971 1.01282 1.54255 1.20179 0.99476 0.82459 1.39642 0.86492 1.25667 0.96492 1.01095 0.94731 1.70107 1.16526 1.30619 1.30807 0.85657 0.79757 0.79278 0.78514 1.19659 1.20407 1.18741 1.18968 0.84325 0.86307 0.97635 1.67634 1.07820 1.31716 1.17360 1.23092 0.99060 0.86172 0.88510 1.19848 0.97385 0.96137 1.19077 1.21074 0.99120 0.91370 0.90521 1.21376 0.95424 0.98672 1.13808 1.22788 0.91921 0.95223 0.89751 1.67572 1.39629 0.96954 1.18316 1.18897 0.85845 0.90781 0.89372 1.67685 1.37784 0.95521 1.33085 0.91351 0.91409 0.92428 0.91076 0.82331 0.85679 0.85907 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.91 8.73 59.85 0.52 3.43 15 2 N -0.36 -9.37 3.11 -124.48 -0.39 -9.76 15 3 C -0.29 -7.43 9.29 -15.04 -0.14 -7.57 15 4 H 0.12 3.00 7.27 -52.48 -0.38 2.62 15 5 C 0.03 0.71 5.08 -17.45 -0.09 0.62 15 6 N -0.85 -21.34 10.64 55.49 0.59 -20.75 15 7 Si 0.94 18.86 29.58 -169.99 -5.03 13.83 15 8 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 9 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 10 H -0.26 -5.21 7.11 56.52 0.40 -4.80 15 11 C 0.48 12.44 8.12 -322.82 -2.62 9.82 15 12 N -0.53 -12.49 9.11 -13.53 -0.12 -12.61 15 13 C 0.22 4.29 11.16 -16.70 -0.19 4.10 15 14 C -0.31 -6.09 5.74 -106.76 -0.61 -6.70 15 15 C 0.01 0.12 9.93 -39.28 -0.39 -0.27 15 16 C -0.27 -3.77 10.03 -39.74 -0.40 -4.17 15 17 C 0.18 2.88 11.14 -17.43 -0.19 2.69 15 18 N -0.51 -10.86 10.44 -12.58 -0.13 -10.99 15 19 C 0.40 9.36 7.67 -157.88 -1.21 8.15 15 20 N -0.61 -15.61 9.05 -13.57 -0.12 -15.73 15 21 H 0.07 1.74 7.43 -51.93 -0.39 1.35 15 22 H 0.07 1.62 7.18 -51.92 -0.37 1.25 15 23 H 0.06 1.37 7.16 -51.93 -0.37 1.00 15 24 H 0.28 6.52 8.31 -40.82 -0.34 6.18 15 25 H 0.16 2.24 8.06 -52.48 -0.42 1.81 15 26 H 0.13 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.12 1.28 8.06 -52.49 -0.42 0.85 15 28 H 0.15 1.77 8.06 -52.49 -0.42 1.35 15 LS Contribution 249.70 15.07 3.76 3.76 Total: -1.00 -30.54 249.70 -9.10 -39.64 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -2.34 Total: 2.53 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: -5.32 Total: 10.08 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -0.17 Total: -69.84 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.54 -9.10 -39.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798825.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.085 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds