Wall clock time and date at job start Sun Mar 29 2020 22:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99878 * 2 1 4 4 H 1.08005 * 119.99984 * 201.01365 * 3 2 1 5 5 C 1.38874 * 120.00263 * 21.00865 * 3 2 1 6 6 N 1.31514 * 119.99876 * 13.82950 * 5 3 2 7 7 Si 1.86802 * 120.00148 * 193.82939 * 5 3 2 8 8 H 1.48507 * 109.46670 * 85.02390 * 7 5 3 9 9 H 1.48496 * 109.47270 * 205.02170 * 7 5 3 10 10 H 1.48495 * 109.47233 * 325.02518 * 7 5 3 11 11 C 1.38224 * 120.00228 * 179.97438 * 2 1 3 12 12 N 1.33206 * 118.63874 * 180.02562 * 11 2 1 13 13 C 1.31648 * 121.41989 * 180.02562 * 12 11 2 14 14 C 1.40700 * 118.44219 * 0.02562 * 13 12 11 15 15 C 1.40371 * 122.13806 * 179.97438 * 14 13 12 16 16 C 1.36844 * 118.01222 * 180.02562 * 15 14 13 17 17 C 1.39161 * 119.91954 * 0.02562 * 16 15 14 18 18 N 1.31324 * 121.83290 * 359.97438 * 17 16 15 19 19 C 1.33414 * 121.23573 * 0.02562 * 18 17 16 20 20 N 1.31970 * 118.63727 * 0.02858 * 11 2 1 21 21 H 1.08993 * 109.47293 * 274.39008 * 1 2 3 22 22 H 1.09007 * 109.46859 * 34.39287 * 1 2 3 23 23 H 1.09005 * 109.46851 * 154.38808 * 1 2 3 24 24 H 0.96997 * 119.99816 * 179.97438 * 6 5 3 25 25 H 1.08008 * 120.77780 * 180.02562 * 13 12 11 26 26 H 1.08001 * 120.99369 * 359.97438 * 15 14 13 27 27 H 1.08002 * 120.03717 * 179.97438 * 16 15 14 28 28 H 1.07997 * 119.08144 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1758 1.2171 -0.3354 5 6 1.5245 2.3487 0.4312 6 7 0.3871 2.2791 1.0877 7 14 2.2992 4.0115 0.0786 8 1 1.8970 4.4676 -1.2763 9 1 1.8384 4.9967 1.0896 10 1 3.7780 3.8921 0.1419 11 6 2.1561 -1.1970 0.0005 12 7 3.4878 -1.1653 0.0010 13 6 4.2007 -2.2721 0.0011 14 6 3.5234 -3.5054 0.0000 15 6 4.2058 -4.7321 -0.0006 16 6 3.4625 -5.8810 -0.0022 17 6 2.0728 -5.8087 -0.0037 18 7 1.4390 -4.6584 -0.0032 19 6 2.1043 -3.5020 -0.0016 20 7 1.4693 -2.3239 0.0005 21 1 -0.3633 0.0787 1.0246 22 1 -0.3633 0.8481 -0.5805 23 1 -0.3633 -0.9267 -0.4443 24 1 -0.0493 3.0912 1.3892 25 1 5.2801 -2.2343 0.0019 26 1 5.2852 -4.7680 -0.0007 27 1 3.9538 -6.8428 -0.0031 28 1 1.4995 -6.7239 -0.0054 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798825.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:09 Heat of formation + Delta-G solvation = 86.144187 kcal Electronic energy + Delta-G solvation = -15178.022828 eV Core-core repulsion = 12615.387206 eV Total energy + Delta-G solvation = -2562.635622 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.99652 -39.59860 -37.53853 -34.95097 -33.83037 -32.78694 -30.93272 -28.68607 -26.77445 -25.58198 -23.76723 -23.26773 -20.53051 -18.98642 -18.45564 -17.91214 -17.06260 -16.40130 -16.12328 -15.94741 -15.18063 -14.94771 -14.83465 -14.13384 -13.64565 -13.44226 -13.33138 -13.16779 -12.70129 -12.54975 -12.12594 -12.07789 -11.80765 -11.26121 -10.64810 -10.54011 -10.21331 -9.43557 -8.96957 -8.47374 -5.93638 -0.37942 0.07364 1.24954 1.40117 1.45897 1.54571 2.07988 2.27797 2.53043 2.90292 3.23434 3.54233 3.75082 3.89417 4.03060 4.17802 4.33266 4.61003 4.67788 4.82277 4.86534 5.09474 5.14126 5.30551 5.34876 5.44082 5.76761 5.92154 6.35564 6.40608 6.95466 7.20326 7.29735 7.92788 8.51731 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.054652 B = 0.006855 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.213195 B = 4083.771853 C = 4535.672978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.398 5.398 3 C -0.320 4.320 4 H 0.108 0.892 5 C -0.012 4.012 6 N -0.890 5.890 7 Si 1.011 2.989 8 H -0.266 1.266 9 H -0.275 1.275 10 H -0.260 1.260 11 C 0.488 3.512 12 N -0.572 5.572 13 C 0.239 3.761 14 C -0.322 4.322 15 C 0.016 3.984 16 C -0.237 4.237 17 C 0.177 3.823 18 N -0.555 5.555 19 C 0.363 3.637 20 N -0.644 5.644 21 H 0.044 0.956 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.279 0.721 25 H 0.217 0.783 26 H 0.181 0.819 27 H 0.179 0.821 28 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 -10.292 -2.162 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.088 5.088 3 C -0.450 4.450 4 H 0.125 0.875 5 C -0.215 4.215 6 N -0.525 5.525 7 Si 0.832 3.168 8 H -0.191 1.191 9 H -0.200 1.200 10 H -0.184 1.184 11 C 0.133 3.867 12 N -0.290 5.290 13 C 0.051 3.949 14 C -0.334 4.334 15 C -0.011 4.011 16 C -0.260 4.260 17 C 0.003 3.997 18 N -0.269 5.269 19 C 0.114 3.886 20 N -0.380 5.380 21 H 0.063 0.937 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.233 0.767 26 H 0.199 0.801 27 H 0.197 0.803 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.880 -8.656 -2.057 11.247 hybrid contribution 0.876 0.145 0.093 0.893 sum 7.756 -8.511 -1.963 11.681 Atomic orbital electron populations 1.21244 0.78251 0.99250 1.01002 1.42669 1.05850 1.01623 1.58666 1.20181 0.99568 0.83224 1.41978 0.87451 1.26514 0.96960 1.03941 0.94127 1.70203 1.18155 1.31195 1.32987 0.84676 0.78823 0.74934 0.78334 1.19125 1.20022 1.18374 1.19359 0.85511 0.86334 0.95456 1.67752 1.06832 1.33661 1.20713 1.24132 1.01285 0.85037 0.84425 1.20204 0.96066 0.98521 1.18645 1.21712 1.01911 0.89311 0.88211 1.22063 0.94382 1.00872 1.08648 1.23716 0.93980 0.94865 0.87131 1.67567 1.41480 0.97859 1.20028 1.19352 0.88010 0.90629 0.90650 1.67631 1.39571 0.96803 1.33969 0.93696 0.92071 0.93058 0.91101 0.76698 0.80142 0.80334 0.79287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.79 8.73 127.77 1.11 8.90 15 2 N -0.40 -22.33 3.11 -547.75 -1.70 -24.03 15 3 C -0.32 -17.64 9.29 84.05 0.78 -16.86 15 4 H 0.11 5.85 7.27 -2.91 -0.02 5.83 15 5 C -0.01 -0.61 5.08 84.89 0.43 -0.17 15 6 N -0.89 -47.90 10.64 21.66 0.23 -47.67 15 7 Si 1.01 40.39 29.58 68.60 2.03 42.42 15 8 H -0.27 -10.25 7.11 99.48 0.71 -9.55 15 9 H -0.28 -10.64 7.11 99.48 0.71 -9.93 15 10 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 11 C 0.49 26.34 8.12 261.49 2.12 28.46 15 12 N -0.57 -27.20 9.11 -196.71 -1.79 -28.99 15 13 C 0.24 8.53 11.16 85.32 0.95 9.48 15 14 C -0.32 -11.56 5.74 -21.25 -0.12 -11.68 15 15 C 0.02 0.38 9.93 22.46 0.22 0.61 15 16 C -0.24 -4.91 10.03 22.16 0.22 -4.69 15 17 C 0.18 4.83 11.14 84.99 0.95 5.78 15 18 N -0.55 -22.69 10.44 -193.72 -2.02 -24.72 15 19 C 0.36 16.61 7.67 135.13 1.04 17.64 15 20 N -0.64 -34.40 9.05 -196.85 -1.78 -36.18 15 21 H 0.04 2.50 7.43 -2.39 -0.02 2.48 15 22 H 0.06 3.21 7.18 -2.38 -0.02 3.19 15 23 H 0.05 2.66 7.16 -2.38 -0.02 2.64 15 24 H 0.28 13.92 8.31 -92.71 -0.77 13.15 15 25 H 0.22 4.92 8.06 -2.91 -0.02 4.90 15 26 H 0.18 2.32 8.06 -2.91 -0.02 2.30 15 27 H 0.18 1.92 8.06 -2.91 -0.02 1.90 15 28 H 0.19 3.45 8.06 -2.91 -0.02 3.43 15 Total: -1.00 -74.55 249.70 3.86 -70.69 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.18 Total: 11.02 kcal Atomic # 6 Polarization: 29.75 SS G_CDS: 7.71 Total: 37.46 kcal Atomic # 7 Polarization: -154.52 SS G_CDS: -7.06 Total: -161.59 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -74.55 3.86 -70.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798825.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.833 kcal (2) G-P(sol) polarization free energy of solvation -74.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds