Wall clock time and date at job start Sun Mar 29 2020 22:01:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.36769 * 119.99780 * 2 1
4 4 H 1.07999 * 119.99905 * 209.67869 * 3 2 1
5 5 C 1.38958 * 120.00143 * 29.68014 * 3 2 1
6 6 N 1.31447 * 120.00155 * 16.34962 * 5 3 2
7 7 Si 1.86808 * 119.99721 * 196.34585 * 5 3 2
8 8 H 1.48502 * 109.46929 * 90.00402 * 7 5 3
9 9 H 1.48497 * 109.46880 * 209.99660 * 7 5 3
10 10 H 1.48498 * 109.47193 * 330.00200 * 7 5 3
11 11 C 1.37830 * 119.99829 * 179.97438 * 2 1 3
12 12 N 1.32642 * 120.87557 * 174.48167 * 11 2 1
13 13 C 1.32259 * 121.56607 * 180.02562 * 12 11 2
14 14 N 1.31283 * 122.85504 * 0.02562 * 13 12 11
15 15 C 1.33919 * 120.46331 * 359.97438 * 14 13 12
16 16 C 1.40556 * 122.07536 * 179.97438 * 15 14 13
17 17 C 1.36704 * 118.06318 * 180.02562 * 16 15 14
18 18 C 1.39316 * 119.95679 * 0.27493 * 17 16 15
19 19 N 1.31254 * 121.66712 * 359.44271 * 18 17 16
20 20 C 1.33056 * 121.18365 * 0.53644 * 19 18 17
21 21 H 1.08998 * 109.47693 * 245.27870 * 1 2 3
22 22 H 1.09004 * 109.47051 * 5.28735 * 1 2 3
23 23 H 1.09006 * 109.46708 * 125.27919 * 1 2 3
24 24 H 0.96996 * 119.99995 * 180.02562 * 6 5 3
25 25 H 1.08004 * 118.57261 * 180.02562 * 13 12 11
26 26 H 1.08009 * 120.97084 * 0.05209 * 16 15 14
27 27 H 1.07996 * 120.02060 * 180.02562 * 17 16 15
28 28 H 1.08006 * 119.16360 * 179.72124 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1488 1.1845 0.0000
4 1 3.1225 1.2458 -0.4631
5 6 1.5907 2.3089 0.5959
6 7 0.5803 2.1795 1.4266
7 14 2.2766 4.0046 0.2164
8 1 1.5633 4.5766 -0.9538
9 1 2.0865 4.8901 1.3932
10 1 3.7251 3.8950 -0.0919
11 6 2.1541 -1.1937 0.0005
12 7 3.4758 -1.2167 -0.1089
13 6 4.1507 -2.3541 -0.1105
14 7 3.5701 -3.5269 -0.0057
15 6 2.2391 -3.6176 0.1100
16 6 1.5824 -4.8551 0.2237
17 6 0.2200 -4.8523 0.3370
18 6 -0.4759 -3.6454 0.3317
19 7 0.1440 -2.4929 0.2305
20 6 1.4683 -2.4305 0.1177
21 1 -0.3634 -0.4297 0.9334
22 1 -0.3633 1.0233 -0.0947
23 1 -0.3633 -0.5936 -0.8390
24 1 0.1905 2.9644 1.8422
25 1 5.2262 -2.3164 -0.2018
26 1 2.1379 -5.7814 0.2219
27 1 -0.3167 -5.7851 0.4266
28 1 -1.5525 -3.6583 0.4175
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001166798981.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:01:01
Heat of formation + Delta-G solvation = 95.652690 kcal
Electronic energy + Delta-G solvation = -15512.569423 eV
Core-core repulsion = 12950.346121 eV
Total energy + Delta-G solvation = -2562.223303 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.086 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.41209 -37.47839 -36.67002 -33.24130 -31.70348 -31.02174 -29.45303 -26.81276
-25.25570 -23.45011 -23.17505 -20.98702 -18.78686 -17.59582 -16.66236 -16.55651
-15.41255 -14.72416 -14.47737 -14.33217 -13.48928 -13.31799 -13.01787 -12.53302
-12.08435 -11.99168 -11.87358 -11.61283 -11.06799 -10.88081 -10.62699 -10.43498
-10.10620 -9.47576 -8.94165 -8.76762 -8.58393 -7.71326 -7.14637 -6.81727
-4.20855 1.27938 1.60395 2.77995 2.99567 3.03734 3.06585 3.71331
3.90986 4.31961 4.53703 4.97941 5.14988 5.19645 5.31455 5.47161
5.65263 5.81262 6.12280 6.30635 6.53297 6.58263 6.61072 6.69371
6.98874 7.01344 7.17317 7.30438 7.70771 8.02454 8.31400 8.60642
8.76136 9.01982 9.59709 10.07146
Molecular weight = 230.09amu
Principal moments of inertia in cm(-1)
A = 0.038939 B = 0.008665 C = 0.007249
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 718.899216 B = 3230.445922 C = 3861.935267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.113 3.887
2 N -0.333 5.333
3 C -0.288 4.288
4 H 0.120 0.880
5 C 0.034 3.966
6 N -0.833 5.833
7 Si 0.942 3.058
8 H -0.270 1.270
9 H -0.277 1.277
10 H -0.260 1.260
11 C 0.357 3.643
12 N -0.606 5.606
13 C 0.352 3.648
14 N -0.630 5.630
15 C 0.167 3.833
16 C -0.115 4.115
17 C -0.133 4.133
18 C 0.033 3.967
19 N -0.432 5.432
20 C -0.001 4.001
21 H 0.069 0.931
22 H 0.084 0.916
23 H 0.049 0.951
24 H 0.282 0.718
25 H 0.174 0.826
26 H 0.131 0.869
27 H 0.125 0.875
28 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.078 -4.263 -1.805 5.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.030 4.030
2 N -0.012 5.012
3 C -0.420 4.420
4 H 0.137 0.863
5 C -0.176 4.176
6 N -0.465 5.465
7 Si 0.766 3.234
8 H -0.195 1.195
9 H -0.203 1.203
10 H -0.184 1.184
11 C 0.104 3.896
12 N -0.338 5.338
13 C 0.059 3.941
14 N -0.360 5.360
15 C 0.038 3.962
16 C -0.144 4.144
17 C -0.155 4.155
18 C -0.135 4.135
19 N -0.143 5.143
20 C -0.140 4.140
21 H 0.088 0.912
22 H 0.103 0.897
23 H 0.068 0.932
24 H 0.093 0.907
25 H 0.191 0.809
26 H 0.149 0.851
27 H 0.143 0.857
28 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -1.961 -2.971 -1.738 3.962
hybrid contribution -0.220 -0.141 0.104 0.281
sum -2.182 -3.112 -1.635 4.137
Atomic orbital electron populations
1.21992 0.77513 1.02255 1.01230 1.42904 1.06184 1.02486 1.49608
1.20280 1.04280 0.84229 1.33231 0.86285 1.25779 0.96378 1.01657
0.93833 1.70031 1.22060 1.32415 1.21952 0.85662 0.80162 0.79151
0.78446 1.19524 1.20265 1.18385 1.18407 0.88139 0.84581 0.98497
1.67775 1.05944 1.30591 1.29528 1.24162 0.99545 0.82691 0.87698
1.68633 1.08349 1.28090 1.30930 1.19376 0.91080 0.92719 0.92977
1.20794 0.93859 0.96444 1.03266 1.21697 0.94700 0.99241 0.99909
1.22476 0.99718 0.87700 1.03654 1.67913 1.08892 1.28468 1.09043
1.19778 0.90851 0.94617 1.08712 0.91231 0.89734 0.93244 0.90720
0.80925 0.85104 0.85694 0.83726
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 2.60 7.80 59.85 0.47 3.07 15
2 N -0.33 -8.45 3.05 -121.84 -0.37 -8.82 15
3 C -0.29 -7.32 9.18 -15.08 -0.14 -7.46 15
4 H 0.12 3.05 7.51 -52.49 -0.39 2.66 15
5 C 0.03 0.82 4.89 -17.45 -0.09 0.73 15
6 N -0.83 -20.40 11.20 55.50 0.62 -19.78 15
7 Si 0.94 18.32 29.58 -169.99 -5.03 13.29 15
8 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15
9 H -0.28 -5.34 7.11 56.52 0.40 -4.94 15
10 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15
11 C 0.36 9.08 7.39 -154.87 -1.14 7.93 15
12 N -0.61 -14.91 9.40 -13.47 -0.13 -15.04 15
13 C 0.35 7.67 12.23 -92.19 -1.13 6.54 15
14 N -0.63 -14.04 10.45 -12.61 -0.13 -14.17 15
15 C 0.17 3.73 6.62 -84.83 -0.56 3.16 15
16 C -0.11 -2.10 10.14 -39.26 -0.40 -2.50 15
17 C -0.13 -2.12 10.03 -39.74 -0.40 -2.52 15
18 C 0.03 0.58 11.15 -17.40 -0.19 0.39 15
19 N -0.43 -9.30 6.41 -10.77 -0.07 -9.37 15
20 C 0.00 -0.03 6.56 -84.67 -0.56 -0.59 15
21 H 0.07 1.65 7.20 -51.93 -0.37 1.28 15
22 H 0.08 1.96 6.00 -51.93 -0.31 1.64 15
23 H 0.05 1.07 7.20 -51.93 -0.37 0.70 15
24 H 0.28 6.38 8.31 -40.82 -0.34 6.04 15
25 H 0.17 3.04 8.06 -52.48 -0.42 2.62 15
26 H 0.13 2.09 8.06 -52.48 -0.42 1.67 15
27 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15
28 H 0.15 2.01 8.06 -52.48 -0.42 1.59 15
LS Contribution 245.84 15.07 3.70 3.70
Total: -1.00 -28.69 245.84 -7.82 -36.51
By element:
Atomic # 1 Polarization: 7.20 SS G_CDS: -2.28 Total: 4.92 kcal
Atomic # 6 Polarization: 12.90 SS G_CDS: -4.14 Total: 8.76 kcal
Atomic # 7 Polarization: -67.10 SS G_CDS: -0.08 Total: -67.18 kcal
Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal
Total LS contribution 3.70 Total: 3.70 kcal
Total: -28.69 -7.82 -36.51 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166798981.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 132.162 kcal
(2) G-P(sol) polarization free energy of solvation -28.692 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.470 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal
(6) G-S(sol) free energy of system = (1) + (5) 95.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds