Wall clock time and date at job start Sun Mar 29 2020 22:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36769 * 119.99780 * 2 1 4 4 H 1.07999 * 119.99905 * 209.67869 * 3 2 1 5 5 C 1.38958 * 120.00143 * 29.68014 * 3 2 1 6 6 N 1.31447 * 120.00155 * 16.34962 * 5 3 2 7 7 Si 1.86808 * 119.99721 * 196.34585 * 5 3 2 8 8 H 1.48502 * 109.46929 * 90.00402 * 7 5 3 9 9 H 1.48497 * 109.46880 * 209.99660 * 7 5 3 10 10 H 1.48498 * 109.47193 * 330.00200 * 7 5 3 11 11 C 1.37830 * 119.99829 * 179.97438 * 2 1 3 12 12 N 1.32642 * 120.87557 * 174.48167 * 11 2 1 13 13 C 1.32259 * 121.56607 * 180.02562 * 12 11 2 14 14 N 1.31283 * 122.85504 * 0.02562 * 13 12 11 15 15 C 1.33919 * 120.46331 * 359.97438 * 14 13 12 16 16 C 1.40556 * 122.07536 * 179.97438 * 15 14 13 17 17 C 1.36704 * 118.06318 * 180.02562 * 16 15 14 18 18 C 1.39316 * 119.95679 * 0.27493 * 17 16 15 19 19 N 1.31254 * 121.66712 * 359.44271 * 18 17 16 20 20 C 1.33056 * 121.18365 * 0.53644 * 19 18 17 21 21 H 1.08998 * 109.47693 * 245.27870 * 1 2 3 22 22 H 1.09004 * 109.47051 * 5.28735 * 1 2 3 23 23 H 1.09006 * 109.46708 * 125.27919 * 1 2 3 24 24 H 0.96996 * 119.99995 * 180.02562 * 6 5 3 25 25 H 1.08004 * 118.57261 * 180.02562 * 13 12 11 26 26 H 1.08009 * 120.97084 * 0.05209 * 16 15 14 27 27 H 1.07996 * 120.02060 * 180.02562 * 17 16 15 28 28 H 1.08006 * 119.16360 * 179.72124 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1488 1.1845 0.0000 4 1 3.1225 1.2458 -0.4631 5 6 1.5907 2.3089 0.5959 6 7 0.5803 2.1795 1.4266 7 14 2.2766 4.0046 0.2164 8 1 1.5633 4.5766 -0.9538 9 1 2.0865 4.8901 1.3932 10 1 3.7251 3.8950 -0.0919 11 6 2.1541 -1.1937 0.0005 12 7 3.4758 -1.2167 -0.1089 13 6 4.1507 -2.3541 -0.1105 14 7 3.5701 -3.5269 -0.0057 15 6 2.2391 -3.6176 0.1100 16 6 1.5824 -4.8551 0.2237 17 6 0.2200 -4.8523 0.3370 18 6 -0.4759 -3.6454 0.3317 19 7 0.1440 -2.4929 0.2305 20 6 1.4683 -2.4305 0.1177 21 1 -0.3634 -0.4297 0.9334 22 1 -0.3633 1.0233 -0.0947 23 1 -0.3633 -0.5936 -0.8390 24 1 0.1905 2.9644 1.8422 25 1 5.2262 -2.3164 -0.2018 26 1 2.1379 -5.7814 0.2219 27 1 -0.3167 -5.7851 0.4266 28 1 -1.5525 -3.6583 0.4175 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166798981.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:01 Heat of formation + Delta-G solvation = 95.652690 kcal Electronic energy + Delta-G solvation = -15512.569423 eV Core-core repulsion = 12950.346121 eV Total energy + Delta-G solvation = -2562.223303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41209 -37.47839 -36.67002 -33.24130 -31.70348 -31.02174 -29.45303 -26.81276 -25.25570 -23.45011 -23.17505 -20.98702 -18.78686 -17.59582 -16.66236 -16.55651 -15.41255 -14.72416 -14.47737 -14.33217 -13.48928 -13.31799 -13.01787 -12.53302 -12.08435 -11.99168 -11.87358 -11.61283 -11.06799 -10.88081 -10.62699 -10.43498 -10.10620 -9.47576 -8.94165 -8.76762 -8.58393 -7.71326 -7.14637 -6.81727 -4.20855 1.27938 1.60395 2.77995 2.99567 3.03734 3.06585 3.71331 3.90986 4.31961 4.53703 4.97941 5.14988 5.19645 5.31455 5.47161 5.65263 5.81262 6.12280 6.30635 6.53297 6.58263 6.61072 6.69371 6.98874 7.01344 7.17317 7.30438 7.70771 8.02454 8.31400 8.60642 8.76136 9.01982 9.59709 10.07146 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.038939 B = 0.008665 C = 0.007249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.899216 B = 3230.445922 C = 3861.935267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.333 5.333 3 C -0.288 4.288 4 H 0.120 0.880 5 C 0.034 3.966 6 N -0.833 5.833 7 Si 0.942 3.058 8 H -0.270 1.270 9 H -0.277 1.277 10 H -0.260 1.260 11 C 0.357 3.643 12 N -0.606 5.606 13 C 0.352 3.648 14 N -0.630 5.630 15 C 0.167 3.833 16 C -0.115 4.115 17 C -0.133 4.133 18 C 0.033 3.967 19 N -0.432 5.432 20 C -0.001 4.001 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.049 0.951 24 H 0.282 0.718 25 H 0.174 0.826 26 H 0.131 0.869 27 H 0.125 0.875 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -4.263 -1.805 5.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.012 5.012 3 C -0.420 4.420 4 H 0.137 0.863 5 C -0.176 4.176 6 N -0.465 5.465 7 Si 0.766 3.234 8 H -0.195 1.195 9 H -0.203 1.203 10 H -0.184 1.184 11 C 0.104 3.896 12 N -0.338 5.338 13 C 0.059 3.941 14 N -0.360 5.360 15 C 0.038 3.962 16 C -0.144 4.144 17 C -0.155 4.155 18 C -0.135 4.135 19 N -0.143 5.143 20 C -0.140 4.140 21 H 0.088 0.912 22 H 0.103 0.897 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.191 0.809 26 H 0.149 0.851 27 H 0.143 0.857 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.961 -2.971 -1.738 3.962 hybrid contribution -0.220 -0.141 0.104 0.281 sum -2.182 -3.112 -1.635 4.137 Atomic orbital electron populations 1.21992 0.77513 1.02255 1.01230 1.42904 1.06184 1.02486 1.49608 1.20280 1.04280 0.84229 1.33231 0.86285 1.25779 0.96378 1.01657 0.93833 1.70031 1.22060 1.32415 1.21952 0.85662 0.80162 0.79151 0.78446 1.19524 1.20265 1.18385 1.18407 0.88139 0.84581 0.98497 1.67775 1.05944 1.30591 1.29528 1.24162 0.99545 0.82691 0.87698 1.68633 1.08349 1.28090 1.30930 1.19376 0.91080 0.92719 0.92977 1.20794 0.93859 0.96444 1.03266 1.21697 0.94700 0.99241 0.99909 1.22476 0.99718 0.87700 1.03654 1.67913 1.08892 1.28468 1.09043 1.19778 0.90851 0.94617 1.08712 0.91231 0.89734 0.93244 0.90720 0.80925 0.85104 0.85694 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.60 7.80 59.85 0.47 3.07 15 2 N -0.33 -8.45 3.05 -121.84 -0.37 -8.82 15 3 C -0.29 -7.32 9.18 -15.08 -0.14 -7.46 15 4 H 0.12 3.05 7.51 -52.49 -0.39 2.66 15 5 C 0.03 0.82 4.89 -17.45 -0.09 0.73 15 6 N -0.83 -20.40 11.20 55.50 0.62 -19.78 15 7 Si 0.94 18.32 29.58 -169.99 -5.03 13.29 15 8 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 9 H -0.28 -5.34 7.11 56.52 0.40 -4.94 15 10 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 11 C 0.36 9.08 7.39 -154.87 -1.14 7.93 15 12 N -0.61 -14.91 9.40 -13.47 -0.13 -15.04 15 13 C 0.35 7.67 12.23 -92.19 -1.13 6.54 15 14 N -0.63 -14.04 10.45 -12.61 -0.13 -14.17 15 15 C 0.17 3.73 6.62 -84.83 -0.56 3.16 15 16 C -0.11 -2.10 10.14 -39.26 -0.40 -2.50 15 17 C -0.13 -2.12 10.03 -39.74 -0.40 -2.52 15 18 C 0.03 0.58 11.15 -17.40 -0.19 0.39 15 19 N -0.43 -9.30 6.41 -10.77 -0.07 -9.37 15 20 C 0.00 -0.03 6.56 -84.67 -0.56 -0.59 15 21 H 0.07 1.65 7.20 -51.93 -0.37 1.28 15 22 H 0.08 1.96 6.00 -51.93 -0.31 1.64 15 23 H 0.05 1.07 7.20 -51.93 -0.37 0.70 15 24 H 0.28 6.38 8.31 -40.82 -0.34 6.04 15 25 H 0.17 3.04 8.06 -52.48 -0.42 2.62 15 26 H 0.13 2.09 8.06 -52.48 -0.42 1.67 15 27 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15 28 H 0.15 2.01 8.06 -52.48 -0.42 1.59 15 LS Contribution 245.84 15.07 3.70 3.70 Total: -1.00 -28.69 245.84 -7.82 -36.51 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -2.28 Total: 4.92 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -4.14 Total: 8.76 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -0.08 Total: -67.18 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.69 -7.82 -36.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798981.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.162 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds